Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:43554434-43855019

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mcur1 13 43538393 to 43560191 21798 - protein coding gene mitochondrial calcium uniporter regulator 1
Cpgi5517 13 43559475 to 43560545 1070 CpG island CpG island 5517
Tssr122270 13 43559812 to 43559851 39 - TSS region transcription start site region 122270
Tssr122271 13 43559852 to 43559870 18 - TSS region transcription start site region 122271
Tssr122272 13 43560114 to 43560171 57 - TSS region transcription start site region 122272
Tssr122273 13 43560174 to 43560231 57 - TSS region transcription start site region 122273
Cpgi5518 13 43579740 to 43580136 396 CpG island CpG island 5518
Cpgi5519 13 43592551 to 43592789 238 CpG island CpG island 5519
Tssr119507 13 43603819 to 43603847 28 + TSS region transcription start site region 119507
Tssr119508 13 43603859 to 43603870 11 + TSS region transcription start site region 119508
Cpgi5520 13 43615618 to 43616335 717 CpG island CpG island 5520
Rnf182 13 43615710 to 43670945 55235 + protein coding gene ring finger protein 182
Tssr119509 13 43615768 to 43615788 20 + TSS region transcription start site region 119509
Tssr119510 13 43615950 to 43615991 41 + TSS region transcription start site region 119510
Tssr119511 13 43615998 to 43616016 18 + TSS region transcription start site region 119511
Tssr119512 13 43616027 to 43616044 17 + TSS region transcription start site region 119512
Tssr122274 13 43616067 to 43616086 19 - TSS region transcription start site region 122274
Tssr119513 13 43653570 to 43653571 1 + TSS region transcription start site region 119513
Gm47728 13 43683120 to 43701064 17944 + lincRNA gene predicted gene, 47728
C030005H24Rik 13 43704434 to 43705019 585 unclassified non-coding RNA gene RIKEN cDNA C030005H24 gene
Gm20751 13 43716791 to 43719038 2247 + lincRNA gene predicted gene, 20751
Tssr122275 13 43765247 to 43765263 16 - TSS region transcription start site region 122275
Tssr119514 13 43765505 to 43765530 25 + TSS region transcription start site region 119514
Tssr119515 13 43765535 to 43765548 13 + TSS region transcription start site region 119515
D13Mit19 13 43767657 to 43767806 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 19
Cpgi5521 13 43784751 to 43785758 1007 CpG island CpG island 5521
Cd83 13 43785112 to 43803133 18021 + protein coding gene CD83 antigen
Tssr119516 13 43785140 to 43785160 20 + TSS region transcription start site region 119516
Tssr119517 13 43785168 to 43785203 35 + TSS region transcription start site region 119517
Tssr122276 13 43789076 to 43789093 17 - TSS region transcription start site region 122276
Tssr119518 13 43791029 to 43791053 24 + TSS region transcription start site region 119518
Tssr119519 13 43797599 to 43797618 19 + TSS region transcription start site region 119519
Tssr119520 13 43797884 to 43797897 13 + TSS region transcription start site region 119520
Tssr119521 13 43804927 to 43804935 8 + TSS region transcription start site region 119521
Gm33115 13 43842453 to 43846157 3704 + lincRNA gene predicted gene, 33115