Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:42829740-44330136

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phactr1 13 42680623 to 43138526 457903 + protein coding gene phosphatase and actin regulator 1
Tssr119475 13 42838733 to 42838740 7 + TSS region transcription start site region 119475
Tssr119476 13 42856761 to 42856786 25 + TSS region transcription start site region 119476
Tssr119477 13 42856844 to 42856880 36 + TSS region transcription start site region 119477
Tssr119478 13 42866271 to 42866301 30 + TSS region transcription start site region 119478
Tssr119479 13 42866313 to 42866337 24 + TSS region transcription start site region 119479
Tssr119480 13 42866382 to 42866410 28 + TSS region transcription start site region 119480
Tssr119481 13 42866435 to 42866450 15 + TSS region transcription start site region 119481
Tssr119482 13 42866847 to 42866898 51 + TSS region transcription start site region 119482
Gm15812 13 42868338 to 42869602 1264 - pseudogene predicted gene 15812
Tssr119483 13 42898136 to 42898182 46 + TSS region transcription start site region 119483
Cpgi5507 13 42916079 to 42917022 943 CpG island CpG island 5507
Tssr119484 13 42916792 to 42916811 19 + TSS region transcription start site region 119484
Gm15809 13 42998511 to 43006067 7556 + sense intronic lncRNA gene predicted gene 15809
Tssr122233 13 43008564 to 43008572 8 - TSS region transcription start site region 122233
Gm26086 13 43052148 to 43052410 262 - unclassified non-coding RNA gene predicted gene, 26086
Tssr122234 13 43077839 to 43077868 29 - TSS region transcription start site region 122234
Tssr119485 13 43112114 to 43112119 5 + TSS region transcription start site region 119485
Gm15813 13 43117664 to 43122786 5122 - antisense lncRNA gene predicted gene 15813
Tssr119486 13 43122825 to 43122830 5 + TSS region transcription start site region 119486
Tssr119487 13 43122849 to 43122869 20 + TSS region transcription start site region 119487
Tssr122235 13 43125711 to 43125723 12 - TSS region transcription start site region 122235
Tssr119488 13 43125846 to 43125853 7 + TSS region transcription start site region 119488
Tssr119489 13 43125859 to 43125866 7 + TSS region transcription start site region 119489
Tssr119490 13 43125869 to 43125878 9 + TSS region transcription start site region 119490
Tssr119491 13 43125880 to 43125891 11 + TSS region transcription start site region 119491
Tssr119492 13 43125930 to 43125938 8 + TSS region transcription start site region 119492
Tssr119493 13 43126020 to 43126034 14 + TSS region transcription start site region 119493
Tssr119494 13 43135250 to 43135263 13 + TSS region transcription start site region 119494
Tssr119495 13 43137872 to 43137884 12 + TSS region transcription start site region 119495
Tbc1d7 13 43151740 to 43171501 19761 - protein coding gene TBC1 domain family, member 7
Tssr122236 13 43154739 to 43154744 5 - TSS region transcription start site region 122236
Tssr122237 13 43154749 to 43154766 17 - TSS region transcription start site region 122237
Tssr122238 13 43154777 to 43154790 13 - TSS region transcription start site region 122238
Tssr122239 13 43154792 to 43154805 13 - TSS region transcription start site region 122239
Tssr122240 13 43154812 to 43154821 9 - TSS region transcription start site region 122240
Tssr122241 13 43159561 to 43159569 8 - TSS region transcription start site region 122241
Cpgi5508 13 43171140 to 43171892 752 CpG island CpG island 5508
Tssr122242 13 43171351 to 43171368 17 - TSS region transcription start site region 122242
Tssr122243 13 43171375 to 43171424 49 - TSS region transcription start site region 122243
Tssr122244 13 43171437 to 43171457 20 - TSS region transcription start site region 122244
Tssr122245 13 43171461 to 43171488 27 - TSS region transcription start site region 122245
Tssr119496 13 43171518 to 43171530 12 + TSS region transcription start site region 119496
Gm40929 13 43171556 to 43192505 20949 + lncRNA gene predicted gene, 40929
Tssr119497 13 43183978 to 43183997 19 + TSS region transcription start site region 119497
Cpgi5509 13 43191716 to 43191885 169 CpG island CpG island 5509
Gfod1 13 43195245 to 43304172 108927 - protein coding gene glucose-fructose oxidoreductase domain containing 1
Cpgi5510 13 43200295 to 43201408 1113 CpG island CpG island 5510
Tssr122246 13 43226907 to 43226908 1 - TSS region transcription start site region 122246
Tssr122247 13 43250823 to 43250835 12 - TSS region transcription start site region 122247
Tssr119498 13 43250932 to 43250938 6 + TSS region transcription start site region 119498
Tssr4056 13 43266422 to 43266434 12 - TSS region transcription start site region 4056
D13Mit276 13 43268476 to 43268602 126 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 276
Tssr122248 13 43268959 to 43268969 10 - TSS region transcription start site region 122248
Tssr122249 13 43271292 to 43271296 4 - TSS region transcription start site region 122249
Tssr122250 13 43292507 to 43292513 6 - TSS region transcription start site region 122250
Cpgi5511 13 43302885 to 43304938 2053 CpG island CpG island 5511
Tssr122251 13 43304118 to 43304130 12 - TSS region transcription start site region 122251
Tssr122252 13 43304131 to 43304146 15 - TSS region transcription start site region 122252
Tssr122253 13 43304153 to 43304213 60 - TSS region transcription start site region 122253
Tssr122254 13 43304299 to 43304309 10 - TSS region transcription start site region 122254
D13Mit178 13 43356678 to 43356819 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 178
Cpgi5512 13 43365371 to 43365927 556 CpG island CpG island 5512
Tssr119499 13 43365458 to 43365522 64 + TSS region transcription start site region 119499
Sirt5 13 43365496 to 43395203 29707 + protein coding gene sirtuin 5
Tssr119500 13 43365616 to 43365657 41 + TSS region transcription start site region 119500
Tssr122255 13 43398182 to 43398186 4 - TSS region transcription start site region 122255
Cpgi5513 13 43398226 to 43398973 747 CpG island CpG island 5513
Tssr119501 13 43398375 to 43398402 27 + TSS region transcription start site region 119501
Nol7 13 43398376 to 43402858 4482 + protein coding gene nucleolar protein 7
Tssr119502 13 43398625 to 43398695 70 + TSS region transcription start site region 119502
Ranbp9 13 43402675 to 43481282 78607 - protein coding gene RAN binding protein 9
Gm47597 13 43417534 to 43417865 331 + pseudogene predicted gene, 47597
Tssr122256 13 43423424 to 43423432 8 - TSS region transcription start site region 122256
Gm26064 13 43425742 to 43425850 108 - snRNA gene predicted gene, 26064
Tssr122257 13 43435212 to 43435213 1 - TSS region transcription start site region 122257
Tssr122258 13 43478892 to 43478907 15 - TSS region transcription start site region 122258
Cpgi5514 13 43480036 to 43481822 1786 CpG island CpG island 5514
Tssr122259 13 43480973 to 43481005 32 - TSS region transcription start site region 122259
Tssr122260 13 43481021 to 43481038 17 - TSS region transcription start site region 122260
Tssr122261 13 43481044 to 43481049 5 - TSS region transcription start site region 122261
Tssr122262 13 43481056 to 43481067 11 - TSS region transcription start site region 122262
Tssr122263 13 43481081 to 43481095 14 - TSS region transcription start site region 122263
Tssr122264 13 43481101 to 43481108 7 - TSS region transcription start site region 122264
Tssr122265 13 43481173 to 43481191 18 - TSS region transcription start site region 122265
Tssr122266 13 43481221 to 43481325 104 - TSS region transcription start site region 122266
Tssr122267 13 43481455 to 43481515 60 - TSS region transcription start site region 122267
Gm32878 13 43489504 to 43494756 5252 + lncRNA gene predicted gene, 32878
Tssr119503 13 43493991 to 43493994 3 + TSS region transcription start site region 119503
Cpgi5515 13 43498876 to 43499119 243 CpG island CpG island 5515
Gm47683 13 43498897 to 43500167 1270 - lincRNA gene predicted gene, 47683
Cpgi5516 13 43503491 to 43503826 335 CpG island CpG island 5516
Tssr119504 13 43506053 to 43506063 10 + TSS region transcription start site region 119504
Tssr119505 13 43508500 to 43508508 8 + TSS region transcription start site region 119505
Gm7214 13 43508971 to 43509242 271 - pseudogene predicted gene 7214
Tssr122268 13 43525588 to 43525596 8 - TSS region transcription start site region 122268
Gm32939 13 43530220 to 43531781 1561 + lincRNA gene predicted gene, 32939
Tssr119506 13 43531698 to 43531705 7 + TSS region transcription start site region 119506
Mcur1 13 43538393 to 43560191 21798 - protein coding gene mitochondrial calcium uniporter regulator 1
Tssr122269 13 43547849 to 43547852 3 - TSS region transcription start site region 122269
Cpgi5517 13 43559475 to 43560545 1070 CpG island CpG island 5517
Tssr122270 13 43559812 to 43559851 39 - TSS region transcription start site region 122270
Tssr122271 13 43559852 to 43559870 18 - TSS region transcription start site region 122271
Tssr122272 13 43560114 to 43560171 57 - TSS region transcription start site region 122272
Tssr122273 13 43560174 to 43560231 57 - TSS region transcription start site region 122273
Cpgi5518 13 43579740 to 43580136 396 CpG island CpG island 5518
Cpgi5519 13 43592551 to 43592789 238 CpG island CpG island 5519
Tssr119507 13 43603819 to 43603847 28 + TSS region transcription start site region 119507
Tssr119508 13 43603859 to 43603870 11 + TSS region transcription start site region 119508
Cpgi5520 13 43615618 to 43616335 717 CpG island CpG island 5520
Rnf182 13 43615710 to 43670945 55235 + protein coding gene ring finger protein 182
Tssr119509 13 43615768 to 43615788 20 + TSS region transcription start site region 119509
Tssr119510 13 43615950 to 43615991 41 + TSS region transcription start site region 119510
Tssr119511 13 43615998 to 43616016 18 + TSS region transcription start site region 119511
Tssr119512 13 43616027 to 43616044 17 + TSS region transcription start site region 119512
Tssr122274 13 43616067 to 43616086 19 - TSS region transcription start site region 122274
Tssr119513 13 43653570 to 43653571 1 + TSS region transcription start site region 119513
Gm47728 13 43683120 to 43701064 17944 + lincRNA gene predicted gene, 47728
C030005H24Rik 13 43704434 to 43705019 585 unclassified non-coding RNA gene RIKEN cDNA C030005H24 gene
Gm20751 13 43716791 to 43719038 2247 + lincRNA gene predicted gene, 20751
Tssr122275 13 43765247 to 43765263 16 - TSS region transcription start site region 122275
Tssr119514 13 43765505 to 43765530 25 + TSS region transcription start site region 119514
Tssr119515 13 43765535 to 43765548 13 + TSS region transcription start site region 119515
D13Mit19 13 43767657 to 43767806 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 19
Cpgi5521 13 43784751 to 43785758 1007 CpG island CpG island 5521
Cd83 13 43785112 to 43803133 18021 + protein coding gene CD83 antigen
Tssr119516 13 43785140 to 43785160 20 + TSS region transcription start site region 119516
Tssr119517 13 43785168 to 43785203 35 + TSS region transcription start site region 119517
Tssr122276 13 43789076 to 43789093 17 - TSS region transcription start site region 122276
Tssr119518 13 43791029 to 43791053 24 + TSS region transcription start site region 119518
Tssr119519 13 43797599 to 43797618 19 + TSS region transcription start site region 119519
Tssr119520 13 43797884 to 43797897 13 + TSS region transcription start site region 119520
Tssr119521 13 43804927 to 43804935 8 + TSS region transcription start site region 119521
Gm33115 13 43842453 to 43846157 3704 + lincRNA gene predicted gene, 33115
Cpgi5522 13 43864338 to 43865367 1029 CpG island CpG island 5522
Gm33195 13 43864669 to 43868589 3920 + lincRNA gene predicted gene, 33195
Gm23117 13 43872802 to 43872909 107 + snRNA gene predicted gene, 23117
Tssr122277 13 43923877 to 43923886 9 - TSS region transcription start site region 122277
Tssr119522 13 43948837 to 43948840 3 + TSS region transcription start site region 119522
Gm2233 13 43948879 to 43952699 3820 + lincRNA gene predicted gene 2233
Tssr119523 13 43962204 to 43962226 22 + TSS region transcription start site region 119523
Tssr119524 13 43962245 to 43962281 36 + TSS region transcription start site region 119524
Tssr119525 13 43974921 to 43974928 7 + TSS region transcription start site region 119525
D13Mit243 13 43985062 to 43985164 102 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 243
A430062P19Rik 13 43990996 to 43992794 1798 unclassified gene RIKEN cDNA A430062P19 gene
D13Mit164 13 43995190 to 43995307 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 164
Gm33489 13 44010592 to 44018522 7930 - lincRNA gene predicted gene, 33489
Tssr122278 13 44018572 to 44018604 32 - TSS region transcription start site region 122278
Gm33630 13 44092028 to 44099960 7932 - lincRNA gene predicted gene, 33630
Gm5083 13 44121167 to 44125179 4012 + lincRNA gene predicted gene 5083
Tssr119526 13 44121294 to 44121322 28 + TSS region transcription start site region 119526
Cpgi5523 13 44139100 to 44139328 228 CpG island CpG island 5523
Gm33684 13 44150595 to 44151953 1358 + lincRNA gene predicted gene, 33684
A330076C08Rik 13 44193589 to 44216487 22898 - lincRNA gene RIKEN cDNA A330076C08 gene
Tssr119527 13 44197057 to 44197062 5 + TSS region transcription start site region 119527
Tssr119528 13 44197073 to 44197081 8 + TSS region transcription start site region 119528
Tssr122279 13 44197458 to 44197469 11 - TSS region transcription start site region 122279
D13Mit165 13 44215633 to 44215754 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 165
Tssr119529 13 44216191 to 44216226 35 + TSS region transcription start site region 119529
Gm47781 13 44232398 to 44239606 7208 + lincRNA gene predicted gene, 47781
Gm29676 13 44250092 to 44260123 10031 - lincRNA gene predicted gene, 29676
D13Mit49 13 44322063 to 44322211 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 49