Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:42421271-43311301

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm6049 13 42472439 to 42472774 335 - pseudogene predicted gene 6049
Tssr122232 13 42538216 to 42538223 7 - TSS region transcription start site region 122232
Gm47125 13 42569463 to 42569886 423 + pseudogene predicted gene, 47125
Gm23086 13 42624994 to 42625084 90 + miRNA gene predicted gene, 23086
Tssr119449 13 42680565 to 42680575 10 + TSS region transcription start site region 119449
Phactr1 13 42680623 to 43138526 457903 + protein coding gene phosphatase and actin regulator 1
Tssr119450 13 42680787 to 42680803 16 + TSS region transcription start site region 119450
Tssr119451 13 42680829 to 42680859 30 + TSS region transcription start site region 119451
Tssr119452 13 42680885 to 42680894 9 + TSS region transcription start site region 119452
Tssr119453 13 42681561 to 42681564 3 + TSS region transcription start site region 119453
Tssr119454 13 42681566 to 42681586 20 + TSS region transcription start site region 119454
Tssr119455 13 42681589 to 42681619 30 + TSS region transcription start site region 119455
Tssr119456 13 42681687 to 42681706 19 + TSS region transcription start site region 119456
Tssr119457 13 42682001 to 42682011 10 + TSS region transcription start site region 119457
Tssr119458 13 42682078 to 42682093 15 + TSS region transcription start site region 119458
Tssr119459 13 42682096 to 42682125 29 + TSS region transcription start site region 119459
Ath25 13 42683053 to 42683053 0 QTL atherosclerosis 25
Tssr119460 13 42704083 to 42704085 2 + TSS region transcription start site region 119460
Tssr119461 13 42709328 to 42709339 11 + TSS region transcription start site region 119461
Tssr119462 13 42709482 to 42709538 56 + TSS region transcription start site region 119462
Tssr119463 13 42709650 to 42709739 89 + TSS region transcription start site region 119463
Cpgi5506 13 42709654 to 42710356 702 CpG island CpG island 5506
Tssr119464 13 42717432 to 42717444 12 + TSS region transcription start site region 119464
Tssr119465 13 42728841 to 42728842 1 + TSS region transcription start site region 119465
Tssr119466 13 42728992 to 42728995 3 + TSS region transcription start site region 119466
Tssr119467 13 42741685 to 42741689 4 + TSS region transcription start site region 119467
Tssr119468 13 42745696 to 42745698 2 + TSS region transcription start site region 119468
Tssr119469 13 42753821 to 42753832 11 + TSS region transcription start site region 119469
Tssr119470 13 42753990 to 42754005 15 + TSS region transcription start site region 119470
Gm15810 13 42782692 to 42788258 5566 - antisense lncRNA gene predicted gene 15810
Tssr119471 13 42785071 to 42785087 16 + TSS region transcription start site region 119471
Tssr119472 13 42785173 to 42785188 15 + TSS region transcription start site region 119472
Tssr119473 13 42790591 to 42790608 17 + TSS region transcription start site region 119473
Tssr119474 13 42799806 to 42799817 11 + TSS region transcription start site region 119474
Tssr119475 13 42838733 to 42838740 7 + TSS region transcription start site region 119475
Tssr119476 13 42856761 to 42856786 25 + TSS region transcription start site region 119476
Tssr119477 13 42856844 to 42856880 36 + TSS region transcription start site region 119477
Tssr119478 13 42866271 to 42866301 30 + TSS region transcription start site region 119478
Tssr119479 13 42866313 to 42866337 24 + TSS region transcription start site region 119479
Tssr119480 13 42866382 to 42866410 28 + TSS region transcription start site region 119480
Tssr119481 13 42866435 to 42866450 15 + TSS region transcription start site region 119481
Tssr119482 13 42866847 to 42866898 51 + TSS region transcription start site region 119482
Gm15812 13 42868338 to 42869602 1264 - pseudogene predicted gene 15812
Tssr119483 13 42898136 to 42898182 46 + TSS region transcription start site region 119483
Cpgi5507 13 42916079 to 42917022 943 CpG island CpG island 5507
Tssr119484 13 42916792 to 42916811 19 + TSS region transcription start site region 119484
Gm15809 13 42998511 to 43006067 7556 + sense intronic lncRNA gene predicted gene 15809
Tssr122233 13 43008564 to 43008572 8 - TSS region transcription start site region 122233
Gm26086 13 43052148 to 43052410 262 - unclassified non-coding RNA gene predicted gene, 26086
Tssr122234 13 43077839 to 43077868 29 - TSS region transcription start site region 122234
Tssr119485 13 43112114 to 43112119 5 + TSS region transcription start site region 119485
Gm15813 13 43117664 to 43122786 5122 - antisense lncRNA gene predicted gene 15813
Tssr119486 13 43122825 to 43122830 5 + TSS region transcription start site region 119486
Tssr119487 13 43122849 to 43122869 20 + TSS region transcription start site region 119487
Tssr122235 13 43125711 to 43125723 12 - TSS region transcription start site region 122235
Tssr119488 13 43125846 to 43125853 7 + TSS region transcription start site region 119488
Tssr119489 13 43125859 to 43125866 7 + TSS region transcription start site region 119489
Tssr119490 13 43125869 to 43125878 9 + TSS region transcription start site region 119490
Tssr119491 13 43125880 to 43125891 11 + TSS region transcription start site region 119491
Tssr119492 13 43125930 to 43125938 8 + TSS region transcription start site region 119492
Tssr119493 13 43126020 to 43126034 14 + TSS region transcription start site region 119493
Tssr119494 13 43135250 to 43135263 13 + TSS region transcription start site region 119494
Tssr119495 13 43137872 to 43137884 12 + TSS region transcription start site region 119495
Tbc1d7 13 43151740 to 43171501 19761 - protein coding gene TBC1 domain family, member 7
Tssr122236 13 43154739 to 43154744 5 - TSS region transcription start site region 122236
Tssr122237 13 43154749 to 43154766 17 - TSS region transcription start site region 122237
Tssr122238 13 43154777 to 43154790 13 - TSS region transcription start site region 122238
Tssr122239 13 43154792 to 43154805 13 - TSS region transcription start site region 122239
Tssr122240 13 43154812 to 43154821 9 - TSS region transcription start site region 122240
Tssr122241 13 43159561 to 43159569 8 - TSS region transcription start site region 122241
Cpgi5508 13 43171140 to 43171892 752 CpG island CpG island 5508
Tssr122242 13 43171351 to 43171368 17 - TSS region transcription start site region 122242
Tssr122243 13 43171375 to 43171424 49 - TSS region transcription start site region 122243
Tssr122244 13 43171437 to 43171457 20 - TSS region transcription start site region 122244
Tssr122245 13 43171461 to 43171488 27 - TSS region transcription start site region 122245
Tssr119496 13 43171518 to 43171530 12 + TSS region transcription start site region 119496
Gm40929 13 43171556 to 43192505 20949 + lncRNA gene predicted gene, 40929
Tssr119497 13 43183978 to 43183997 19 + TSS region transcription start site region 119497
Cpgi5509 13 43191716 to 43191885 169 CpG island CpG island 5509
Gfod1 13 43195245 to 43304172 108927 - protein coding gene glucose-fructose oxidoreductase domain containing 1
Cpgi5510 13 43200295 to 43201408 1113 CpG island CpG island 5510
Tssr122246 13 43226907 to 43226908 1 - TSS region transcription start site region 122246
Tssr122247 13 43250823 to 43250835 12 - TSS region transcription start site region 122247
Tssr119498 13 43250932 to 43250938 6 + TSS region transcription start site region 119498
Tssr4056 13 43266422 to 43266434 12 - TSS region transcription start site region 4056
D13Mit276 13 43268476 to 43268602 126 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 276
Tssr122248 13 43268959 to 43268969 10 - TSS region transcription start site region 122248
Tssr122249 13 43271292 to 43271296 4 - TSS region transcription start site region 122249
Tssr122250 13 43292507 to 43292513 6 - TSS region transcription start site region 122250
Cpgi5511 13 43302885 to 43304938 2053 CpG island CpG island 5511
Tssr122251 13 43304118 to 43304130 12 - TSS region transcription start site region 122251
Tssr122252 13 43304131 to 43304146 15 - TSS region transcription start site region 122252
Tssr122253 13 43304153 to 43304213 60 - TSS region transcription start site region 122253
Tssr122254 13 43304299 to 43304309 10 - TSS region transcription start site region 122254