Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:42057256-42557267

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hivep1 13 42051970 to 42185030 133060 + protein coding gene human immunodeficiency virus type I enhancer binding protein 1
Tssr119434 13 42069662 to 42069666 4 + TSS region transcription start site region 119434
Tssr119435 13 42103156 to 42103196 40 + TSS region transcription start site region 119435
Tssr119436 13 42149352 to 42149355 3 + TSS region transcription start site region 119436
Tssr122228 13 42174635 to 42174636 1 - TSS region transcription start site region 122228
Cpgi5504 13 42183748 to 42184339 591 CpG island CpG island 5504
Gm32778 13 42186725 to 42199473 12748 + lncRNA gene predicted gene, 32778
4732499D12Rik 13 42199732 to 42203859 4127 unclassified gene RIKEN cDNA 4732499D12 gene
Tssr122229 13 42241747 to 42241755 8 - TSS region transcription start site region 122229
Tssr122230 13 42244435 to 42244442 7 - TSS region transcription start site region 122230
Tssr122231 13 42245760 to 42245768 8 - TSS region transcription start site region 122231
D13Mit138 13 42300805 to 42300948 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 138
Tssr119437 13 42301265 to 42301281 16 + TSS region transcription start site region 119437
Tssr119438 13 42301424 to 42301435 11 + TSS region transcription start site region 119438
Tssr119439 13 42301446 to 42301491 45 + TSS region transcription start site region 119439
Edn1 13 42301476 to 42307990 6514 + protein coding gene endothelin 1
Tssr119440 13 42301509 to 42301518 9 + TSS region transcription start site region 119440
Cpgi5505 13 42301550 to 42302006 456 CpG island CpG island 5505
Tssr119441 13 42301612 to 42301626 14 + TSS region transcription start site region 119441
Tssr119442 13 42301782 to 42301813 31 + TSS region transcription start site region 119442
Tssr119443 13 42301823 to 42301834 11 + TSS region transcription start site region 119443
Tssr119444 13 42301953 to 42301967 14 + TSS region transcription start site region 119444
Gm47118 13 42302298 to 42304991 2693 - antisense lncRNA gene predicted gene, 47118
Tssr119445 13 42305027 to 42305038 11 + TSS region transcription start site region 119445
Tssr119446 13 42307234 to 42307243 9 + TSS region transcription start site region 119446
Tssr119447 13 42307256 to 42307267 11 + TSS region transcription start site region 119447
Tssr119448 13 42307273 to 42307281 8 + TSS region transcription start site region 119448
Gm32833 13 42389899 to 42403389 13490 - lncRNA gene predicted gene, 32833
Gm6049 13 42472439 to 42472774 335 - pseudogene predicted gene 6049
Tssr122232 13 42538216 to 42538223 7 - TSS region transcription start site region 122232