Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:41887234-42727243

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm10790 13 41865915 to 41913092 47177 + lncRNA gene predicted gene 10790
Gm22157 13 41901651 to 41901754 103 + snRNA gene predicted gene, 22157
Gm32555 13 41993919 to 42021086 27167 - lncRNA gene predicted gene, 32555
Gm28707 13 42049334 to 42050287 953 + lincRNA gene predicted gene 28707
Tssr119424 13 42049367 to 42049369 2 + TSS region transcription start site region 119424
Cpgi5502 13 42049419 to 42049823 404 CpG island CpG island 5502
Tssr119425 13 42049595 to 42049606 11 + TSS region transcription start site region 119425
Cpgi5503 13 42051230 to 42053557 2327 CpG island CpG island 5503
Tssr119426 13 42051284 to 42051322 38 + TSS region transcription start site region 119426
Tssr119427 13 42051748 to 42051773 25 + TSS region transcription start site region 119427
Tssr119428 13 42051842 to 42051875 33 + TSS region transcription start site region 119428
Hivep1 13 42051970 to 42185030 133060 + protein coding gene human immunodeficiency virus type I enhancer binding protein 1
Tssr119429 13 42051996 to 42052007 11 + TSS region transcription start site region 119429
Tssr119430 13 42052015 to 42052072 57 + TSS region transcription start site region 119430
Tssr119431 13 42052112 to 42052128 16 + TSS region transcription start site region 119431
Tssr119432 13 42052316 to 42052368 52 + TSS region transcription start site region 119432
Tssr122226 13 42052793 to 42052804 11 - TSS region transcription start site region 122226
Tssr122227 13 42052939 to 42052944 5 - TSS region transcription start site region 122227
Tssr119433 13 42053010 to 42053022 12 + TSS region transcription start site region 119433
Tssr119434 13 42069662 to 42069666 4 + TSS region transcription start site region 119434
Tssr119435 13 42103156 to 42103196 40 + TSS region transcription start site region 119435
Tssr119436 13 42149352 to 42149355 3 + TSS region transcription start site region 119436
Tssr122228 13 42174635 to 42174636 1 - TSS region transcription start site region 122228
Cpgi5504 13 42183748 to 42184339 591 CpG island CpG island 5504
Gm32778 13 42186725 to 42199473 12748 + lncRNA gene predicted gene, 32778
4732499D12Rik 13 42199732 to 42203859 4127 unclassified gene RIKEN cDNA 4732499D12 gene
Tssr122229 13 42241747 to 42241755 8 - TSS region transcription start site region 122229
Tssr122230 13 42244435 to 42244442 7 - TSS region transcription start site region 122230
Tssr122231 13 42245760 to 42245768 8 - TSS region transcription start site region 122231
D13Mit138 13 42300805 to 42300948 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 138
Tssr119437 13 42301265 to 42301281 16 + TSS region transcription start site region 119437
Tssr119438 13 42301424 to 42301435 11 + TSS region transcription start site region 119438
Tssr119439 13 42301446 to 42301491 45 + TSS region transcription start site region 119439
Edn1 13 42301476 to 42307990 6514 + protein coding gene endothelin 1
Tssr119440 13 42301509 to 42301518 9 + TSS region transcription start site region 119440
Cpgi5505 13 42301550 to 42302006 456 CpG island CpG island 5505
Tssr119441 13 42301612 to 42301626 14 + TSS region transcription start site region 119441
Tssr119442 13 42301782 to 42301813 31 + TSS region transcription start site region 119442
Tssr119443 13 42301823 to 42301834 11 + TSS region transcription start site region 119443
Tssr119444 13 42301953 to 42301967 14 + TSS region transcription start site region 119444
Gm47118 13 42302298 to 42304991 2693 - antisense lncRNA gene predicted gene, 47118
Tssr119445 13 42305027 to 42305038 11 + TSS region transcription start site region 119445
Tssr119446 13 42307234 to 42307243 9 + TSS region transcription start site region 119446
Tssr119447 13 42307256 to 42307267 11 + TSS region transcription start site region 119447
Tssr119448 13 42307273 to 42307281 8 + TSS region transcription start site region 119448
Gm32833 13 42389899 to 42403389 13490 - lncRNA gene predicted gene, 32833
Gm6049 13 42472439 to 42472774 335 - pseudogene predicted gene 6049
Tssr122232 13 42538216 to 42538223 7 - TSS region transcription start site region 122232
Gm47125 13 42569463 to 42569886 423 + pseudogene predicted gene, 47125
Gm23086 13 42624994 to 42625084 90 + miRNA gene predicted gene, 23086
Tssr119449 13 42680565 to 42680575 10 + TSS region transcription start site region 119449
Phactr1 13 42680623 to 43138526 457903 + protein coding gene phosphatase and actin regulator 1
Tssr119450 13 42680787 to 42680803 16 + TSS region transcription start site region 119450
Tssr119451 13 42680829 to 42680859 30 + TSS region transcription start site region 119451
Tssr119452 13 42680885 to 42680894 9 + TSS region transcription start site region 119452
Tssr119453 13 42681561 to 42681564 3 + TSS region transcription start site region 119453
Tssr119454 13 42681566 to 42681586 20 + TSS region transcription start site region 119454
Tssr119455 13 42681589 to 42681619 30 + TSS region transcription start site region 119455
Tssr119456 13 42681687 to 42681706 19 + TSS region transcription start site region 119456
Tssr119457 13 42682001 to 42682011 10 + TSS region transcription start site region 119457
Tssr119458 13 42682078 to 42682093 15 + TSS region transcription start site region 119458
Tssr119459 13 42682096 to 42682125 29 + TSS region transcription start site region 119459
Ath25 13 42683053 to 42683053 0 QTL atherosclerosis 25
Tssr119460 13 42704083 to 42704085 2 + TSS region transcription start site region 119460
Tssr119461 13 42709328 to 42709339 11 + TSS region transcription start site region 119461
Tssr119462 13 42709482 to 42709538 56 + TSS region transcription start site region 119462
Tssr119463 13 42709650 to 42709739 89 + TSS region transcription start site region 119463
Cpgi5506 13 42709654 to 42710356 702 CpG island CpG island 5506
Tssr119464 13 42717432 to 42717444 12 + TSS region transcription start site region 119464