Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:41816953-42786967

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adtrp 13 41763145 to 41847616 84471 - protein coding gene androgen dependent TFPI regulating protein
D13Mit119 13 41820372 to 41820518 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 119
Tssr122215 13 41828314 to 41828325 11 - TSS region transcription start site region 122215
Tssr122216 13 41828337 to 41828402 65 - TSS region transcription start site region 122216
Tssr122217 13 41828418 to 41828444 26 - TSS region transcription start site region 122217
Tssr122218 13 41828468 to 41828475 7 - TSS region transcription start site region 122218
Tssr122219 13 41829079 to 41829107 28 - TSS region transcription start site region 122219
Gm28564 13 41843014 to 41849768 6754 + antisense lncRNA gene predicted gene 28564
Tssr122220 13 41847482 to 41847490 8 - TSS region transcription start site region 122220
Tssr122221 13 41847521 to 41847532 11 - TSS region transcription start site region 122221
Tssr122222 13 41847547 to 41847561 14 - TSS region transcription start site region 122222
Tssr122223 13 41847584 to 41847598 14 - TSS region transcription start site region 122223
Tssr122224 13 41847599 to 41847625 26 - TSS region transcription start site region 122224
Tssr122225 13 41847626 to 41847642 16 - TSS region transcription start site region 122225
Gm37698 13 41850718 to 41851180 462 + unclassified gene predicted gene, 37698
Gm10790 13 41865915 to 41913092 47177 + lncRNA gene predicted gene 10790
Tssr119423 13 41865931 to 41865945 14 + TSS region transcription start site region 119423
Gm22157 13 41901651 to 41901754 103 + snRNA gene predicted gene, 22157
Gm32555 13 41993919 to 42021086 27167 - lncRNA gene predicted gene, 32555
Gm28707 13 42049334 to 42050287 953 + lincRNA gene predicted gene 28707
Tssr119424 13 42049367 to 42049369 2 + TSS region transcription start site region 119424
Cpgi5502 13 42049419 to 42049823 404 CpG island CpG island 5502
Tssr119425 13 42049595 to 42049606 11 + TSS region transcription start site region 119425
Cpgi5503 13 42051230 to 42053557 2327 CpG island CpG island 5503
Tssr119426 13 42051284 to 42051322 38 + TSS region transcription start site region 119426
Tssr119427 13 42051748 to 42051773 25 + TSS region transcription start site region 119427
Tssr119428 13 42051842 to 42051875 33 + TSS region transcription start site region 119428
Hivep1 13 42051970 to 42185030 133060 + protein coding gene human immunodeficiency virus type I enhancer binding protein 1
Tssr119429 13 42051996 to 42052007 11 + TSS region transcription start site region 119429
Tssr119430 13 42052015 to 42052072 57 + TSS region transcription start site region 119430
Tssr119431 13 42052112 to 42052128 16 + TSS region transcription start site region 119431
Tssr119432 13 42052316 to 42052368 52 + TSS region transcription start site region 119432
Tssr122226 13 42052793 to 42052804 11 - TSS region transcription start site region 122226
Tssr122227 13 42052939 to 42052944 5 - TSS region transcription start site region 122227
Tssr119433 13 42053010 to 42053022 12 + TSS region transcription start site region 119433
Tssr119434 13 42069662 to 42069666 4 + TSS region transcription start site region 119434
Tssr119435 13 42103156 to 42103196 40 + TSS region transcription start site region 119435
Tssr119436 13 42149352 to 42149355 3 + TSS region transcription start site region 119436
Tssr122228 13 42174635 to 42174636 1 - TSS region transcription start site region 122228
Cpgi5504 13 42183748 to 42184339 591 CpG island CpG island 5504
Gm32778 13 42186725 to 42199473 12748 + lncRNA gene predicted gene, 32778
4732499D12Rik 13 42199732 to 42203859 4127 unclassified gene RIKEN cDNA 4732499D12 gene
Tssr122229 13 42241747 to 42241755 8 - TSS region transcription start site region 122229
Tssr122230 13 42244435 to 42244442 7 - TSS region transcription start site region 122230
Tssr122231 13 42245760 to 42245768 8 - TSS region transcription start site region 122231
D13Mit138 13 42300805 to 42300948 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 138
Tssr119437 13 42301265 to 42301281 16 + TSS region transcription start site region 119437
Tssr119438 13 42301424 to 42301435 11 + TSS region transcription start site region 119438
Tssr119439 13 42301446 to 42301491 45 + TSS region transcription start site region 119439
Edn1 13 42301476 to 42307990 6514 + protein coding gene endothelin 1
Tssr119440 13 42301509 to 42301518 9 + TSS region transcription start site region 119440
Cpgi5505 13 42301550 to 42302006 456 CpG island CpG island 5505
Tssr119441 13 42301612 to 42301626 14 + TSS region transcription start site region 119441
Tssr119442 13 42301782 to 42301813 31 + TSS region transcription start site region 119442
Tssr119443 13 42301823 to 42301834 11 + TSS region transcription start site region 119443
Tssr119444 13 42301953 to 42301967 14 + TSS region transcription start site region 119444
Gm47118 13 42302298 to 42304991 2693 - antisense lncRNA gene predicted gene, 47118
Tssr119445 13 42305027 to 42305038 11 + TSS region transcription start site region 119445
Tssr119446 13 42307234 to 42307243 9 + TSS region transcription start site region 119446
Tssr119447 13 42307256 to 42307267 11 + TSS region transcription start site region 119447
Tssr119448 13 42307273 to 42307281 8 + TSS region transcription start site region 119448
Gm32833 13 42389899 to 42403389 13490 - lncRNA gene predicted gene, 32833
Gm6049 13 42472439 to 42472774 335 - pseudogene predicted gene 6049
Tssr122232 13 42538216 to 42538223 7 - TSS region transcription start site region 122232
Gm47125 13 42569463 to 42569886 423 + pseudogene predicted gene, 47125
Gm23086 13 42624994 to 42625084 90 + miRNA gene predicted gene, 23086
Tssr119449 13 42680565 to 42680575 10 + TSS region transcription start site region 119449
Phactr1 13 42680623 to 43138526 457903 + protein coding gene phosphatase and actin regulator 1
Tssr119450 13 42680787 to 42680803 16 + TSS region transcription start site region 119450
Tssr119451 13 42680829 to 42680859 30 + TSS region transcription start site region 119451
Tssr119452 13 42680885 to 42680894 9 + TSS region transcription start site region 119452
Tssr119453 13 42681561 to 42681564 3 + TSS region transcription start site region 119453
Tssr119454 13 42681566 to 42681586 20 + TSS region transcription start site region 119454
Tssr119455 13 42681589 to 42681619 30 + TSS region transcription start site region 119455
Tssr119456 13 42681687 to 42681706 19 + TSS region transcription start site region 119456
Tssr119457 13 42682001 to 42682011 10 + TSS region transcription start site region 119457
Tssr119458 13 42682078 to 42682093 15 + TSS region transcription start site region 119458
Tssr119459 13 42682096 to 42682125 29 + TSS region transcription start site region 119459
Ath25 13 42683053 to 42683053 0 QTL atherosclerosis 25
Tssr119460 13 42704083 to 42704085 2 + TSS region transcription start site region 119460
Tssr119461 13 42709328 to 42709339 11 + TSS region transcription start site region 119461
Tssr119462 13 42709482 to 42709538 56 + TSS region transcription start site region 119462
Tssr119463 13 42709650 to 42709739 89 + TSS region transcription start site region 119463
Cpgi5506 13 42709654 to 42710356 702 CpG island CpG island 5506
Tssr119464 13 42717432 to 42717444 12 + TSS region transcription start site region 119464
Tssr119465 13 42728841 to 42728842 1 + TSS region transcription start site region 119465
Tssr119466 13 42728992 to 42728995 3 + TSS region transcription start site region 119466
Tssr119467 13 42741685 to 42741689 4 + TSS region transcription start site region 119467
Tssr119468 13 42745696 to 42745698 2 + TSS region transcription start site region 119468
Tssr119469 13 42753821 to 42753832 11 + TSS region transcription start site region 119469
Tssr119470 13 42753990 to 42754005 15 + TSS region transcription start site region 119470
Gm15810 13 42782692 to 42788258 5566 - antisense lncRNA gene predicted gene 15810
Tssr119471 13 42785071 to 42785087 16 + TSS region transcription start site region 119471
Tssr119472 13 42785173 to 42785188 15 + TSS region transcription start site region 119472