Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:41523216-43553223

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226 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm32401 13 41486649 to 41525087 38438 + antisense lncRNA gene predicted gene, 32401
Gm32184 13 41543005 to 41559913 16908 - lincRNA gene predicted gene, 32184
Tssr4053 13 41569021 to 41569040 19 - TSS region transcription start site region 4053
Tssr119410 13 41569292 to 41569293 1 + TSS region transcription start site region 119410
Tssr119411 13 41569296 to 41569305 9 + TSS region transcription start site region 119411
Tssr4054 13 41569326 to 41569336 10 + TSS region transcription start site region 4054
Tssr4055 13 41569559 to 41569580 21 + TSS region transcription start site region 4055
Gm24819 13 41577909 to 41578074 165 - snRNA gene predicted gene, 24819
Cpgi5501 13 41605164 to 41606724 1560 CpG island CpG island 5501
Tssr122210 13 41605497 to 41605501 4 - TSS region transcription start site region 122210
Tssr122211 13 41605530 to 41605545 15 - TSS region transcription start site region 122211
Tssr119412 13 41605821 to 41605863 42 + TSS region transcription start site region 119412
Tssr119413 13 41605867 to 41605902 35 + TSS region transcription start site region 119413
Tssr119414 13 41605904 to 41605929 25 + TSS region transcription start site region 119414
Tmem170b 13 41606216 to 41641357 35141 + protein coding gene transmembrane protein 170B
Tssr122212 13 41606409 to 41606435 26 - TSS region transcription start site region 122212
Tssr122213 13 41607771 to 41607815 44 - TSS region transcription start site region 122213
Tssr119415 13 41625964 to 41625992 28 + TSS region transcription start site region 119415
Tssr119416 13 41636645 to 41636693 48 + TSS region transcription start site region 119416
Tssr119417 13 41637396 to 41637399 3 + TSS region transcription start site region 119417
Tssr119418 13 41639526 to 41639566 40 + TSS region transcription start site region 119418
Gm5082 13 41649443 to 41656777 7334 + lincRNA gene predicted gene 5082
D13Dcr4 13 41662739 to 41662839 100 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 4
Tssr119419 13 41662929 to 41662935 6 + TSS region transcription start site region 119419
Gm40925 13 41676858 to 41683924 7066 + lncRNA gene predicted gene, 40925
Tssr119420 13 41677184 to 41677192 8 + TSS region transcription start site region 119420
Tssr119421 13 41677200 to 41677211 11 + TSS region transcription start site region 119421
D13Mit229 13 41696392 to 41696506 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 229
Adtrp 13 41763145 to 41847616 84471 - protein coding gene androgen dependent TFPI regulating protein
Tssr122214 13 41800669 to 41800680 11 - TSS region transcription start site region 122214
Tssr119422 13 41800772 to 41800782 10 + TSS region transcription start site region 119422
1700061E18Rik 13 41800783 to 41801795 1012 + antisense lncRNA gene RIKEN cDNA 1700061E18 gene
D13Mit119 13 41820372 to 41820518 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 119
Tssr122215 13 41828314 to 41828325 11 - TSS region transcription start site region 122215
Tssr122216 13 41828337 to 41828402 65 - TSS region transcription start site region 122216
Tssr122217 13 41828418 to 41828444 26 - TSS region transcription start site region 122217
Tssr122218 13 41828468 to 41828475 7 - TSS region transcription start site region 122218
Tssr122219 13 41829079 to 41829107 28 - TSS region transcription start site region 122219
Gm28564 13 41843014 to 41849768 6754 + antisense lncRNA gene predicted gene 28564
Tssr122220 13 41847482 to 41847490 8 - TSS region transcription start site region 122220
Tssr122221 13 41847521 to 41847532 11 - TSS region transcription start site region 122221
Tssr122222 13 41847547 to 41847561 14 - TSS region transcription start site region 122222
Tssr122223 13 41847584 to 41847598 14 - TSS region transcription start site region 122223
Tssr122224 13 41847599 to 41847625 26 - TSS region transcription start site region 122224
Tssr122225 13 41847626 to 41847642 16 - TSS region transcription start site region 122225
Gm37698 13 41850718 to 41851180 462 + unclassified gene predicted gene, 37698
Gm10790 13 41865915 to 41913092 47177 + lncRNA gene predicted gene 10790
Tssr119423 13 41865931 to 41865945 14 + TSS region transcription start site region 119423
Gm22157 13 41901651 to 41901754 103 + snRNA gene predicted gene, 22157
Gm32555 13 41993919 to 42021086 27167 - lncRNA gene predicted gene, 32555
Gm28707 13 42049334 to 42050287 953 + lincRNA gene predicted gene 28707
Tssr119424 13 42049367 to 42049369 2 + TSS region transcription start site region 119424
Cpgi5502 13 42049419 to 42049823 404 CpG island CpG island 5502
Tssr119425 13 42049595 to 42049606 11 + TSS region transcription start site region 119425
Cpgi5503 13 42051230 to 42053557 2327 CpG island CpG island 5503
Tssr119426 13 42051284 to 42051322 38 + TSS region transcription start site region 119426
Tssr119427 13 42051748 to 42051773 25 + TSS region transcription start site region 119427
Tssr119428 13 42051842 to 42051875 33 + TSS region transcription start site region 119428
Hivep1 13 42051970 to 42185030 133060 + protein coding gene human immunodeficiency virus type I enhancer binding protein 1
Tssr119429 13 42051996 to 42052007 11 + TSS region transcription start site region 119429
Tssr119430 13 42052015 to 42052072 57 + TSS region transcription start site region 119430
Tssr119431 13 42052112 to 42052128 16 + TSS region transcription start site region 119431
Tssr119432 13 42052316 to 42052368 52 + TSS region transcription start site region 119432
Tssr122226 13 42052793 to 42052804 11 - TSS region transcription start site region 122226
Tssr122227 13 42052939 to 42052944 5 - TSS region transcription start site region 122227
Tssr119433 13 42053010 to 42053022 12 + TSS region transcription start site region 119433
Tssr119434 13 42069662 to 42069666 4 + TSS region transcription start site region 119434
Tssr119435 13 42103156 to 42103196 40 + TSS region transcription start site region 119435
Tssr119436 13 42149352 to 42149355 3 + TSS region transcription start site region 119436
Tssr122228 13 42174635 to 42174636 1 - TSS region transcription start site region 122228
Cpgi5504 13 42183748 to 42184339 591 CpG island CpG island 5504
Gm32778 13 42186725 to 42199473 12748 + lncRNA gene predicted gene, 32778
4732499D12Rik 13 42199732 to 42203859 4127 unclassified gene RIKEN cDNA 4732499D12 gene
Tssr122229 13 42241747 to 42241755 8 - TSS region transcription start site region 122229
Tssr122230 13 42244435 to 42244442 7 - TSS region transcription start site region 122230
Tssr122231 13 42245760 to 42245768 8 - TSS region transcription start site region 122231
D13Mit138 13 42300805 to 42300948 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 138
Tssr119437 13 42301265 to 42301281 16 + TSS region transcription start site region 119437
Tssr119438 13 42301424 to 42301435 11 + TSS region transcription start site region 119438
Tssr119439 13 42301446 to 42301491 45 + TSS region transcription start site region 119439
Edn1 13 42301476 to 42307990 6514 + protein coding gene endothelin 1
Tssr119440 13 42301509 to 42301518 9 + TSS region transcription start site region 119440
Cpgi5505 13 42301550 to 42302006 456 CpG island CpG island 5505
Tssr119441 13 42301612 to 42301626 14 + TSS region transcription start site region 119441
Tssr119442 13 42301782 to 42301813 31 + TSS region transcription start site region 119442
Tssr119443 13 42301823 to 42301834 11 + TSS region transcription start site region 119443
Tssr119444 13 42301953 to 42301967 14 + TSS region transcription start site region 119444
Gm47118 13 42302298 to 42304991 2693 - antisense lncRNA gene predicted gene, 47118
Tssr119445 13 42305027 to 42305038 11 + TSS region transcription start site region 119445
Tssr119446 13 42307234 to 42307243 9 + TSS region transcription start site region 119446
Tssr119447 13 42307256 to 42307267 11 + TSS region transcription start site region 119447
Tssr119448 13 42307273 to 42307281 8 + TSS region transcription start site region 119448
Gm32833 13 42389899 to 42403389 13490 - lncRNA gene predicted gene, 32833
Gm6049 13 42472439 to 42472774 335 - pseudogene predicted gene 6049
Tssr122232 13 42538216 to 42538223 7 - TSS region transcription start site region 122232
Gm47125 13 42569463 to 42569886 423 + pseudogene predicted gene, 47125
Gm23086 13 42624994 to 42625084 90 + miRNA gene predicted gene, 23086
Tssr119449 13 42680565 to 42680575 10 + TSS region transcription start site region 119449
Phactr1 13 42680623 to 43138526 457903 + protein coding gene phosphatase and actin regulator 1
Tssr119450 13 42680787 to 42680803 16 + TSS region transcription start site region 119450
Tssr119451 13 42680829 to 42680859 30 + TSS region transcription start site region 119451
Tssr119452 13 42680885 to 42680894 9 + TSS region transcription start site region 119452
Tssr119453 13 42681561 to 42681564 3 + TSS region transcription start site region 119453
Tssr119454 13 42681566 to 42681586 20 + TSS region transcription start site region 119454
Tssr119455 13 42681589 to 42681619 30 + TSS region transcription start site region 119455
Tssr119456 13 42681687 to 42681706 19 + TSS region transcription start site region 119456
Tssr119457 13 42682001 to 42682011 10 + TSS region transcription start site region 119457
Tssr119458 13 42682078 to 42682093 15 + TSS region transcription start site region 119458
Tssr119459 13 42682096 to 42682125 29 + TSS region transcription start site region 119459
Ath25 13 42683053 to 42683053 0 QTL atherosclerosis 25
Tssr119460 13 42704083 to 42704085 2 + TSS region transcription start site region 119460
Tssr119461 13 42709328 to 42709339 11 + TSS region transcription start site region 119461
Tssr119462 13 42709482 to 42709538 56 + TSS region transcription start site region 119462
Tssr119463 13 42709650 to 42709739 89 + TSS region transcription start site region 119463
Cpgi5506 13 42709654 to 42710356 702 CpG island CpG island 5506
Tssr119464 13 42717432 to 42717444 12 + TSS region transcription start site region 119464
Tssr119465 13 42728841 to 42728842 1 + TSS region transcription start site region 119465
Tssr119466 13 42728992 to 42728995 3 + TSS region transcription start site region 119466
Tssr119467 13 42741685 to 42741689 4 + TSS region transcription start site region 119467
Tssr119468 13 42745696 to 42745698 2 + TSS region transcription start site region 119468
Tssr119469 13 42753821 to 42753832 11 + TSS region transcription start site region 119469
Tssr119470 13 42753990 to 42754005 15 + TSS region transcription start site region 119470
Gm15810 13 42782692 to 42788258 5566 - antisense lncRNA gene predicted gene 15810
Tssr119471 13 42785071 to 42785087 16 + TSS region transcription start site region 119471
Tssr119472 13 42785173 to 42785188 15 + TSS region transcription start site region 119472
Tssr119473 13 42790591 to 42790608 17 + TSS region transcription start site region 119473
Tssr119474 13 42799806 to 42799817 11 + TSS region transcription start site region 119474
Tssr119475 13 42838733 to 42838740 7 + TSS region transcription start site region 119475
Tssr119476 13 42856761 to 42856786 25 + TSS region transcription start site region 119476
Tssr119477 13 42856844 to 42856880 36 + TSS region transcription start site region 119477
Tssr119478 13 42866271 to 42866301 30 + TSS region transcription start site region 119478
Tssr119479 13 42866313 to 42866337 24 + TSS region transcription start site region 119479
Tssr119480 13 42866382 to 42866410 28 + TSS region transcription start site region 119480
Tssr119481 13 42866435 to 42866450 15 + TSS region transcription start site region 119481
Tssr119482 13 42866847 to 42866898 51 + TSS region transcription start site region 119482
Gm15812 13 42868338 to 42869602 1264 - pseudogene predicted gene 15812
Tssr119483 13 42898136 to 42898182 46 + TSS region transcription start site region 119483
Cpgi5507 13 42916079 to 42917022 943 CpG island CpG island 5507
Tssr119484 13 42916792 to 42916811 19 + TSS region transcription start site region 119484
Gm15809 13 42998511 to 43006067 7556 + sense intronic lncRNA gene predicted gene 15809
Tssr122233 13 43008564 to 43008572 8 - TSS region transcription start site region 122233
Gm26086 13 43052148 to 43052410 262 - unclassified non-coding RNA gene predicted gene, 26086
Tssr122234 13 43077839 to 43077868 29 - TSS region transcription start site region 122234
Tssr119485 13 43112114 to 43112119 5 + TSS region transcription start site region 119485
Gm15813 13 43117664 to 43122786 5122 - antisense lncRNA gene predicted gene 15813
Tssr119486 13 43122825 to 43122830 5 + TSS region transcription start site region 119486
Tssr119487 13 43122849 to 43122869 20 + TSS region transcription start site region 119487
Tssr122235 13 43125711 to 43125723 12 - TSS region transcription start site region 122235
Tssr119488 13 43125846 to 43125853 7 + TSS region transcription start site region 119488
Tssr119489 13 43125859 to 43125866 7 + TSS region transcription start site region 119489
Tssr119490 13 43125869 to 43125878 9 + TSS region transcription start site region 119490
Tssr119491 13 43125880 to 43125891 11 + TSS region transcription start site region 119491
Tssr119492 13 43125930 to 43125938 8 + TSS region transcription start site region 119492
Tssr119493 13 43126020 to 43126034 14 + TSS region transcription start site region 119493
Tssr119494 13 43135250 to 43135263 13 + TSS region transcription start site region 119494
Tssr119495 13 43137872 to 43137884 12 + TSS region transcription start site region 119495
Tbc1d7 13 43151740 to 43171501 19761 - protein coding gene TBC1 domain family, member 7
Tssr122236 13 43154739 to 43154744 5 - TSS region transcription start site region 122236
Tssr122237 13 43154749 to 43154766 17 - TSS region transcription start site region 122237
Tssr122238 13 43154777 to 43154790 13 - TSS region transcription start site region 122238
Tssr122239 13 43154792 to 43154805 13 - TSS region transcription start site region 122239
Tssr122240 13 43154812 to 43154821 9 - TSS region transcription start site region 122240
Tssr122241 13 43159561 to 43159569 8 - TSS region transcription start site region 122241
Cpgi5508 13 43171140 to 43171892 752 CpG island CpG island 5508
Tssr122242 13 43171351 to 43171368 17 - TSS region transcription start site region 122242
Tssr122243 13 43171375 to 43171424 49 - TSS region transcription start site region 122243
Tssr122244 13 43171437 to 43171457 20 - TSS region transcription start site region 122244
Tssr122245 13 43171461 to 43171488 27 - TSS region transcription start site region 122245
Tssr119496 13 43171518 to 43171530 12 + TSS region transcription start site region 119496
Gm40929 13 43171556 to 43192505 20949 + lncRNA gene predicted gene, 40929
Tssr119497 13 43183978 to 43183997 19 + TSS region transcription start site region 119497
Cpgi5509 13 43191716 to 43191885 169 CpG island CpG island 5509
Gfod1 13 43195245 to 43304172 108927 - protein coding gene glucose-fructose oxidoreductase domain containing 1
Cpgi5510 13 43200295 to 43201408 1113 CpG island CpG island 5510
Tssr122246 13 43226907 to 43226908 1 - TSS region transcription start site region 122246
Tssr122247 13 43250823 to 43250835 12 - TSS region transcription start site region 122247
Tssr119498 13 43250932 to 43250938 6 + TSS region transcription start site region 119498
Tssr4056 13 43266422 to 43266434 12 - TSS region transcription start site region 4056
D13Mit276 13 43268476 to 43268602 126 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 276
Tssr122248 13 43268959 to 43268969 10 - TSS region transcription start site region 122248
Tssr122249 13 43271292 to 43271296 4 - TSS region transcription start site region 122249
Tssr122250 13 43292507 to 43292513 6 - TSS region transcription start site region 122250
Cpgi5511 13 43302885 to 43304938 2053 CpG island CpG island 5511
Tssr122251 13 43304118 to 43304130 12 - TSS region transcription start site region 122251
Tssr122252 13 43304131 to 43304146 15 - TSS region transcription start site region 122252
Tssr122253 13 43304153 to 43304213 60 - TSS region transcription start site region 122253
Tssr122254 13 43304299 to 43304309 10 - TSS region transcription start site region 122254
D13Mit178 13 43356678 to 43356819 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 178
Cpgi5512 13 43365371 to 43365927 556 CpG island CpG island 5512
Tssr119499 13 43365458 to 43365522 64 + TSS region transcription start site region 119499
Sirt5 13 43365496 to 43395203 29707 + protein coding gene sirtuin 5
Tssr119500 13 43365616 to 43365657 41 + TSS region transcription start site region 119500
Tssr122255 13 43398182 to 43398186 4 - TSS region transcription start site region 122255
Cpgi5513 13 43398226 to 43398973 747 CpG island CpG island 5513
Tssr119501 13 43398375 to 43398402 27 + TSS region transcription start site region 119501
Nol7 13 43398376 to 43402858 4482 + protein coding gene nucleolar protein 7
Tssr119502 13 43398625 to 43398695 70 + TSS region transcription start site region 119502
Ranbp9 13 43402675 to 43481282 78607 - protein coding gene RAN binding protein 9
Gm47597 13 43417534 to 43417865 331 + pseudogene predicted gene, 47597
Tssr122256 13 43423424 to 43423432 8 - TSS region transcription start site region 122256