Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:41338145-42272616

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nedd9 13 41309916 to 41487360 177444 - protein coding gene neural precursor cell expressed, developmentally down-regulated gene 9
Cpgi5500 13 41358553 to 41359165 612 CpG island CpG island 5500
Tssr122194 13 41358990 to 41359006 16 - TSS region transcription start site region 122194
Tssr122195 13 41359877 to 41359881 4 - TSS region transcription start site region 122195
Gm26877 13 41359971 to 41370908 10937 + antisense lncRNA gene predicted gene, 26877
Gm48571 13 41379956 to 41384725 4769 + antisense lncRNA gene predicted gene, 48571
Tssr4050 13 41381437 to 41381443 6 - TSS region transcription start site region 4050
A130026F07Rik 13 41388723 to 41390796 2073 unclassified gene RIKEN cDNA A130026F07 gene
Gm48570 13 41402291 to 41403353 1062 + antisense lncRNA gene predicted gene, 48570
Gm32448 13 41407412 to 41411210 3798 + lncRNA gene predicted gene, 32448
Tssr122196 13 41423227 to 41423243 16 - TSS region transcription start site region 122196
Tssr122197 13 41424979 to 41424993 14 - TSS region transcription start site region 122197
Tssr122198 13 41425043 to 41425096 53 - TSS region transcription start site region 122198
Tssr122199 13 41425127 to 41425146 19 - TSS region transcription start site region 122199
Tssr122200 13 41425156 to 41425194 38 - TSS region transcription start site region 122200
Tssr122201 13 41425240 to 41425256 16 - TSS region transcription start site region 122201
Tssr122202 13 41425366 to 41425379 13 - TSS region transcription start site region 122202
Tssr122203 13 41425996 to 41426010 14 - TSS region transcription start site region 122203
D13Mit118 13 41457333 to 41457480 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 118
Tssr4051 13 41468361 to 41468365 4 - TSS region transcription start site region 4051
Tssr119405 13 41468537 to 41468545 8 + TSS region transcription start site region 119405
Tssr119406 13 41469813 to 41469814 1 + TSS region transcription start site region 119406
Tssr122204 13 41473550 to 41473584 34 - TSS region transcription start site region 122204
Tssr119407 13 41473764 to 41473776 12 + TSS region transcription start site region 119407
Tssr4052 13 41473782 to 41473789 7 + TSS region transcription start site region 4052
Gm48569 13 41476526 to 41477900 1374 - unclassified gene predicted gene, 48569
Gm32401 13 41486649 to 41525087 38438 + antisense lncRNA gene predicted gene, 32401
Tssr122205 13 41486696 to 41486705 9 - TSS region transcription start site region 122205
Tssr122206 13 41486998 to 41487031 33 - TSS region transcription start site region 122206
Tssr119408 13 41487095 to 41487140 45 + TSS region transcription start site region 119408
Tssr119409 13 41487141 to 41487170 29 + TSS region transcription start site region 119409
Tssr122207 13 41487281 to 41487298 17 - TSS region transcription start site region 122207
Tssr122208 13 41487306 to 41487346 40 - TSS region transcription start site region 122208
Tssr122209 13 41487350 to 41487367 17 - TSS region transcription start site region 122209
Gm32184 13 41543005 to 41559913 16908 - lincRNA gene predicted gene, 32184
Tssr4053 13 41569021 to 41569040 19 - TSS region transcription start site region 4053
Tssr119410 13 41569292 to 41569293 1 + TSS region transcription start site region 119410
Tssr119411 13 41569296 to 41569305 9 + TSS region transcription start site region 119411
Tssr4054 13 41569326 to 41569336 10 + TSS region transcription start site region 4054
Tssr4055 13 41569559 to 41569580 21 + TSS region transcription start site region 4055
Gm24819 13 41577909 to 41578074 165 - snRNA gene predicted gene, 24819
Cpgi5501 13 41605164 to 41606724 1560 CpG island CpG island 5501
Tssr122210 13 41605497 to 41605501 4 - TSS region transcription start site region 122210
Tssr122211 13 41605530 to 41605545 15 - TSS region transcription start site region 122211
Tssr119412 13 41605821 to 41605863 42 + TSS region transcription start site region 119412
Tssr119413 13 41605867 to 41605902 35 + TSS region transcription start site region 119413
Tssr119414 13 41605904 to 41605929 25 + TSS region transcription start site region 119414
Tmem170b 13 41606216 to 41641357 35141 + protein coding gene transmembrane protein 170B
Tssr122212 13 41606409 to 41606435 26 - TSS region transcription start site region 122212
Tssr122213 13 41607771 to 41607815 44 - TSS region transcription start site region 122213
Tssr119415 13 41625964 to 41625992 28 + TSS region transcription start site region 119415
Tssr119416 13 41636645 to 41636693 48 + TSS region transcription start site region 119416
Tssr119417 13 41637396 to 41637399 3 + TSS region transcription start site region 119417
Tssr119418 13 41639526 to 41639566 40 + TSS region transcription start site region 119418
Gm5082 13 41649443 to 41656777 7334 + lincRNA gene predicted gene 5082
D13Dcr4 13 41662739 to 41662839 100 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 4
Tssr119419 13 41662929 to 41662935 6 + TSS region transcription start site region 119419
Gm40925 13 41676858 to 41683924 7066 + lncRNA gene predicted gene, 40925
Tssr119420 13 41677184 to 41677192 8 + TSS region transcription start site region 119420
Tssr119421 13 41677200 to 41677211 11 + TSS region transcription start site region 119421
D13Mit229 13 41696392 to 41696506 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 229
Adtrp 13 41763145 to 41847616 84471 - protein coding gene androgen dependent TFPI regulating protein
Tssr122214 13 41800669 to 41800680 11 - TSS region transcription start site region 122214
Tssr119422 13 41800772 to 41800782 10 + TSS region transcription start site region 119422
1700061E18Rik 13 41800783 to 41801795 1012 + antisense lncRNA gene RIKEN cDNA 1700061E18 gene
D13Mit119 13 41820372 to 41820518 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 119
Tssr122215 13 41828314 to 41828325 11 - TSS region transcription start site region 122215
Tssr122216 13 41828337 to 41828402 65 - TSS region transcription start site region 122216
Tssr122217 13 41828418 to 41828444 26 - TSS region transcription start site region 122217
Tssr122218 13 41828468 to 41828475 7 - TSS region transcription start site region 122218
Tssr122219 13 41829079 to 41829107 28 - TSS region transcription start site region 122219
Gm28564 13 41843014 to 41849768 6754 + antisense lncRNA gene predicted gene 28564
Tssr122220 13 41847482 to 41847490 8 - TSS region transcription start site region 122220
Tssr122221 13 41847521 to 41847532 11 - TSS region transcription start site region 122221
Tssr122222 13 41847547 to 41847561 14 - TSS region transcription start site region 122222
Tssr122223 13 41847584 to 41847598 14 - TSS region transcription start site region 122223
Tssr122224 13 41847599 to 41847625 26 - TSS region transcription start site region 122224
Tssr122225 13 41847626 to 41847642 16 - TSS region transcription start site region 122225
Gm37698 13 41850718 to 41851180 462 + unclassified gene predicted gene, 37698
Gm10790 13 41865915 to 41913092 47177 + lncRNA gene predicted gene 10790
Tssr119423 13 41865931 to 41865945 14 + TSS region transcription start site region 119423
Gm22157 13 41901651 to 41901754 103 + snRNA gene predicted gene, 22157
Gm32555 13 41993919 to 42021086 27167 - lncRNA gene predicted gene, 32555
Gm28707 13 42049334 to 42050287 953 + lincRNA gene predicted gene 28707
Tssr119424 13 42049367 to 42049369 2 + TSS region transcription start site region 119424
Cpgi5502 13 42049419 to 42049823 404 CpG island CpG island 5502
Tssr119425 13 42049595 to 42049606 11 + TSS region transcription start site region 119425
Cpgi5503 13 42051230 to 42053557 2327 CpG island CpG island 5503
Tssr119426 13 42051284 to 42051322 38 + TSS region transcription start site region 119426
Tssr119427 13 42051748 to 42051773 25 + TSS region transcription start site region 119427
Tssr119428 13 42051842 to 42051875 33 + TSS region transcription start site region 119428
Hivep1 13 42051970 to 42185030 133060 + protein coding gene human immunodeficiency virus type I enhancer binding protein 1
Tssr119429 13 42051996 to 42052007 11 + TSS region transcription start site region 119429
Tssr119430 13 42052015 to 42052072 57 + TSS region transcription start site region 119430
Tssr119431 13 42052112 to 42052128 16 + TSS region transcription start site region 119431
Tssr119432 13 42052316 to 42052368 52 + TSS region transcription start site region 119432
Tssr122226 13 42052793 to 42052804 11 - TSS region transcription start site region 122226
Tssr122227 13 42052939 to 42052944 5 - TSS region transcription start site region 122227
Tssr119433 13 42053010 to 42053022 12 + TSS region transcription start site region 119433
Tssr119434 13 42069662 to 42069666 4 + TSS region transcription start site region 119434
Tssr119435 13 42103156 to 42103196 40 + TSS region transcription start site region 119435
Tssr119436 13 42149352 to 42149355 3 + TSS region transcription start site region 119436
Tssr122228 13 42174635 to 42174636 1 - TSS region transcription start site region 122228
Cpgi5504 13 42183748 to 42184339 591 CpG island CpG island 5504
Gm32778 13 42186725 to 42199473 12748 + lncRNA gene predicted gene, 32778
4732499D12Rik 13 42199732 to 42203859 4127 unclassified gene RIKEN cDNA 4732499D12 gene
Tssr122229 13 42241747 to 42241755 8 - TSS region transcription start site region 122229
Tssr122230 13 42244435 to 42244442 7 - TSS region transcription start site region 122230
Tssr122231 13 42245760 to 42245768 8 - TSS region transcription start site region 122231