Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:41235127-41615146

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr119394 13 41236022 to 41236066 44 + TSS region transcription start site region 119394
Tssr119395 13 41236289 to 41236300 11 + TSS region transcription start site region 119395
Tssr119396 13 41236317 to 41236334 17 + TSS region transcription start site region 119396
Tssr119397 13 41236335 to 41236347 12 + TSS region transcription start site region 119397
Gm32063 13 41236345 to 41241478 5133 + lincRNA gene predicted gene, 32063
Cpgi5499 13 41249441 to 41250616 1175 CpG island CpG island 5499
Tssr119398 13 41249747 to 41249768 21 + TSS region transcription start site region 119398
Tssr119399 13 41249811 to 41249837 26 + TSS region transcription start site region 119399
Tssr119400 13 41249841 to 41249863 22 + TSS region transcription start site region 119400
Smim13 13 41249844 to 41276577 26733 + protein coding gene small integral membrane protein 13
Tssr119401 13 41249876 to 41249950 74 + TSS region transcription start site region 119401
Tssr119402 13 41249960 to 41249973 13 + TSS region transcription start site region 119402
Tssr119403 13 41250128 to 41250211 83 + TSS region transcription start site region 119403
Tssr119404 13 41254080 to 41254082 2 + TSS region transcription start site region 119404
Gm17364 13 41273803 to 41273977 174 - protein coding gene predicted gene, 17364
D13Mit89 13 41287484 to 41287612 128 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 89
D13Mit62 13 41306659 to 41306832 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 62
Nedd9 13 41309916 to 41487360 177444 - protein coding gene neural precursor cell expressed, developmentally down-regulated gene 9
Cpgi5500 13 41358553 to 41359165 612 CpG island CpG island 5500
Tssr122194 13 41358990 to 41359006 16 - TSS region transcription start site region 122194
Tssr122195 13 41359877 to 41359881 4 - TSS region transcription start site region 122195
Gm26877 13 41359971 to 41370908 10937 + antisense lncRNA gene predicted gene, 26877
Gm48571 13 41379956 to 41384725 4769 + antisense lncRNA gene predicted gene, 48571
Tssr4050 13 41381437 to 41381443 6 - TSS region transcription start site region 4050
A130026F07Rik 13 41388723 to 41390796 2073 unclassified gene RIKEN cDNA A130026F07 gene
Gm48570 13 41402291 to 41403353 1062 + antisense lncRNA gene predicted gene, 48570
Gm32448 13 41407412 to 41411210 3798 + lncRNA gene predicted gene, 32448
Tssr122196 13 41423227 to 41423243 16 - TSS region transcription start site region 122196
Tssr122197 13 41424979 to 41424993 14 - TSS region transcription start site region 122197
Tssr122198 13 41425043 to 41425096 53 - TSS region transcription start site region 122198
Tssr122199 13 41425127 to 41425146 19 - TSS region transcription start site region 122199
Tssr122200 13 41425156 to 41425194 38 - TSS region transcription start site region 122200
Tssr122201 13 41425240 to 41425256 16 - TSS region transcription start site region 122201
Tssr122202 13 41425366 to 41425379 13 - TSS region transcription start site region 122202
Tssr122203 13 41425996 to 41426010 14 - TSS region transcription start site region 122203
D13Mit118 13 41457333 to 41457480 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 118
Tssr4051 13 41468361 to 41468365 4 - TSS region transcription start site region 4051
Tssr119405 13 41468537 to 41468545 8 + TSS region transcription start site region 119405
Tssr119406 13 41469813 to 41469814 1 + TSS region transcription start site region 119406
Tssr122204 13 41473550 to 41473584 34 - TSS region transcription start site region 122204
Tssr119407 13 41473764 to 41473776 12 + TSS region transcription start site region 119407
Tssr4052 13 41473782 to 41473789 7 + TSS region transcription start site region 4052
Gm48569 13 41476526 to 41477900 1374 - unclassified gene predicted gene, 48569
Gm32401 13 41486649 to 41525087 38438 + antisense lncRNA gene predicted gene, 32401
Tssr122205 13 41486696 to 41486705 9 - TSS region transcription start site region 122205
Tssr122206 13 41486998 to 41487031 33 - TSS region transcription start site region 122206
Tssr119408 13 41487095 to 41487140 45 + TSS region transcription start site region 119408
Tssr119409 13 41487141 to 41487170 29 + TSS region transcription start site region 119409
Tssr122207 13 41487281 to 41487298 17 - TSS region transcription start site region 122207
Tssr122208 13 41487306 to 41487346 40 - TSS region transcription start site region 122208
Tssr122209 13 41487350 to 41487367 17 - TSS region transcription start site region 122209
Gm32184 13 41543005 to 41559913 16908 - lincRNA gene predicted gene, 32184
Tssr4053 13 41569021 to 41569040 19 - TSS region transcription start site region 4053
Tssr119410 13 41569292 to 41569293 1 + TSS region transcription start site region 119410
Tssr119411 13 41569296 to 41569305 9 + TSS region transcription start site region 119411
Tssr4054 13 41569326 to 41569336 10 + TSS region transcription start site region 4054
Tssr4055 13 41569559 to 41569580 21 + TSS region transcription start site region 4055
Gm24819 13 41577909 to 41578074 165 - snRNA gene predicted gene, 24819
Cpgi5501 13 41605164 to 41606724 1560 CpG island CpG island 5501
Tssr122210 13 41605497 to 41605501 4 - TSS region transcription start site region 122210
Tssr122211 13 41605530 to 41605545 15 - TSS region transcription start site region 122211
Tssr119412 13 41605821 to 41605863 42 + TSS region transcription start site region 119412
Tssr119413 13 41605867 to 41605902 35 + TSS region transcription start site region 119413
Tssr119414 13 41605904 to 41605929 25 + TSS region transcription start site region 119414
Tmem170b 13 41606216 to 41641357 35141 + protein coding gene transmembrane protein 170B
Tssr122212 13 41606409 to 41606435 26 - TSS region transcription start site region 122212
Tssr122213 13 41607771 to 41607815 44 - TSS region transcription start site region 122213