Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:41114844-41411577

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sycp2l 13 41114419 to 41174351 59932 + protein coding gene synaptonemal complex protein 2-like
Tssr4049 13 41137085 to 41137095 10 - TSS region transcription start site region 4049
Gm48510 13 41176888 to 41179030 2142 + lincRNA gene predicted gene, 48510
Elovl2 13 41182382 to 41220403 38021 - protein coding gene elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
Tssr122179 13 41183086 to 41183093 7 - TSS region transcription start site region 122179
Tssr122180 13 41184076 to 41184080 4 - TSS region transcription start site region 122180
Tssr122181 13 41184292 to 41184302 10 - TSS region transcription start site region 122181
Tssr122182 13 41184433 to 41184446 13 - TSS region transcription start site region 122182
Tssr122183 13 41184789 to 41184801 12 - TSS region transcription start site region 122183
Tssr122184 13 41185000 to 41185003 3 - TSS region transcription start site region 122184
Tssr122185 13 41194792 to 41194803 11 - TSS region transcription start site region 122185
Tssr122186 13 41194810 to 41194821 11 - TSS region transcription start site region 122186
Tssr122187 13 41216951 to 41216955 4 - TSS region transcription start site region 122187
Tssr122188 13 41217079 to 41217083 4 - TSS region transcription start site region 122188
Cpgi5497 13 41219798 to 41221019 1221 CpG island CpG island 5497
Tssr122189 13 41220175 to 41220195 20 - TSS region transcription start site region 122189
Tssr122190 13 41220201 to 41220225 24 - TSS region transcription start site region 122190
Tssr122191 13 41220333 to 41220344 11 - TSS region transcription start site region 122191
Tssr122192 13 41220395 to 41220412 17 - TSS region transcription start site region 122192
Cpgi5498 13 41232283 to 41232505 222 CpG island CpG island 5498
Rps17-ps1 13 41234694 to 41235077 383 - pseudogene ribosomal protein S17, pseudogene 1
Tssr122193 13 41235097 to 41235102 5 - TSS region transcription start site region 122193
Tssr119394 13 41236022 to 41236066 44 + TSS region transcription start site region 119394
Tssr119395 13 41236289 to 41236300 11 + TSS region transcription start site region 119395
Tssr119396 13 41236317 to 41236334 17 + TSS region transcription start site region 119396
Tssr119397 13 41236335 to 41236347 12 + TSS region transcription start site region 119397
Gm32063 13 41236345 to 41241478 5133 + lincRNA gene predicted gene, 32063
Cpgi5499 13 41249441 to 41250616 1175 CpG island CpG island 5499
Tssr119398 13 41249747 to 41249768 21 + TSS region transcription start site region 119398
Tssr119399 13 41249811 to 41249837 26 + TSS region transcription start site region 119399
Tssr119400 13 41249841 to 41249863 22 + TSS region transcription start site region 119400
Smim13 13 41249844 to 41276577 26733 + protein coding gene small integral membrane protein 13
Tssr119401 13 41249876 to 41249950 74 + TSS region transcription start site region 119401
Tssr119402 13 41249960 to 41249973 13 + TSS region transcription start site region 119402
Tssr119403 13 41250128 to 41250211 83 + TSS region transcription start site region 119403
Tssr119404 13 41254080 to 41254082 2 + TSS region transcription start site region 119404
Gm17364 13 41273803 to 41273977 174 - protein coding gene predicted gene, 17364
D13Mit89 13 41287484 to 41287612 128 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 89
D13Mit62 13 41306659 to 41306832 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 62
Nedd9 13 41309916 to 41487360 177444 - protein coding gene neural precursor cell expressed, developmentally down-regulated gene 9
Cpgi5500 13 41358553 to 41359165 612 CpG island CpG island 5500
Tssr122194 13 41358990 to 41359006 16 - TSS region transcription start site region 122194
Tssr122195 13 41359877 to 41359881 4 - TSS region transcription start site region 122195
Gm26877 13 41359971 to 41370908 10937 + antisense lncRNA gene predicted gene, 26877
Gm48571 13 41379956 to 41384725 4769 + antisense lncRNA gene predicted gene, 48571
Tssr4050 13 41381437 to 41381443 6 - TSS region transcription start site region 4050
A130026F07Rik 13 41388723 to 41390796 2073 unclassified gene RIKEN cDNA A130026F07 gene
Gm48570 13 41402291 to 41403353 1062 + antisense lncRNA gene predicted gene, 48570
Gm32448 13 41407412 to 41411210 3798 + lncRNA gene predicted gene, 32448