Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:41007184-42347192

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pak1ip1 13 41001023 to 41013015 11992 + protein coding gene PAK1 interacting protein 1
Cpgi5494 13 41016091 to 41016823 732 CpG island CpG island 5494
Tssr119392 13 41016275 to 41016309 34 + TSS region transcription start site region 119392
Tmem14c 13 41016292 to 41022586 6294 + protein coding gene transmembrane protein 14C
Tssr119393 13 41016323 to 41016335 12 + TSS region transcription start site region 119393
Mak 13 41025008 to 41079706 54698 - protein coding gene male germ cell-associated kinase
Tssr122174 13 41036042 to 41036064 22 - TSS region transcription start site region 122174
Tssr122175 13 41078038 to 41078074 36 - TSS region transcription start site region 122175
Cpgi5495 13 41079186 to 41079827 641 CpG island CpG island 5495
Tssr122176 13 41079546 to 41079557 11 - TSS region transcription start site region 122176
Tssr122177 13 41079600 to 41079622 22 - TSS region transcription start site region 122177
Tssr122178 13 41079628 to 41079662 34 - TSS region transcription start site region 122178
Gm48344 13 41091430 to 41091723 293 + pseudogene predicted gene, 48344
Gcm2 13 41101427 to 41111035 9608 - protein coding gene glial cells missing homolog 2
Cpgi5496 13 41114258 to 41114525 267 CpG island CpG island 5496
Sycp2l 13 41114419 to 41174351 59932 + protein coding gene synaptonemal complex protein 2-like
Tssr4049 13 41137085 to 41137095 10 - TSS region transcription start site region 4049
Gm48510 13 41176888 to 41179030 2142 + lincRNA gene predicted gene, 48510
Elovl2 13 41182382 to 41220403 38021 - protein coding gene elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
Tssr122179 13 41183086 to 41183093 7 - TSS region transcription start site region 122179
Tssr122180 13 41184076 to 41184080 4 - TSS region transcription start site region 122180
Tssr122181 13 41184292 to 41184302 10 - TSS region transcription start site region 122181
Tssr122182 13 41184433 to 41184446 13 - TSS region transcription start site region 122182
Tssr122183 13 41184789 to 41184801 12 - TSS region transcription start site region 122183
Tssr122184 13 41185000 to 41185003 3 - TSS region transcription start site region 122184
Tssr122185 13 41194792 to 41194803 11 - TSS region transcription start site region 122185
Tssr122186 13 41194810 to 41194821 11 - TSS region transcription start site region 122186
Tssr122187 13 41216951 to 41216955 4 - TSS region transcription start site region 122187
Tssr122188 13 41217079 to 41217083 4 - TSS region transcription start site region 122188
Cpgi5497 13 41219798 to 41221019 1221 CpG island CpG island 5497
Tssr122189 13 41220175 to 41220195 20 - TSS region transcription start site region 122189
Tssr122190 13 41220201 to 41220225 24 - TSS region transcription start site region 122190
Tssr122191 13 41220333 to 41220344 11 - TSS region transcription start site region 122191
Tssr122192 13 41220395 to 41220412 17 - TSS region transcription start site region 122192
Cpgi5498 13 41232283 to 41232505 222 CpG island CpG island 5498
Rps17-ps1 13 41234694 to 41235077 383 - pseudogene ribosomal protein S17, pseudogene 1
Tssr122193 13 41235097 to 41235102 5 - TSS region transcription start site region 122193
Tssr119394 13 41236022 to 41236066 44 + TSS region transcription start site region 119394
Tssr119395 13 41236289 to 41236300 11 + TSS region transcription start site region 119395
Tssr119396 13 41236317 to 41236334 17 + TSS region transcription start site region 119396
Tssr119397 13 41236335 to 41236347 12 + TSS region transcription start site region 119397
Gm32063 13 41236345 to 41241478 5133 + lincRNA gene predicted gene, 32063
Cpgi5499 13 41249441 to 41250616 1175 CpG island CpG island 5499
Tssr119398 13 41249747 to 41249768 21 + TSS region transcription start site region 119398
Tssr119399 13 41249811 to 41249837 26 + TSS region transcription start site region 119399
Tssr119400 13 41249841 to 41249863 22 + TSS region transcription start site region 119400
Smim13 13 41249844 to 41276577 26733 + protein coding gene small integral membrane protein 13
Tssr119401 13 41249876 to 41249950 74 + TSS region transcription start site region 119401
Tssr119402 13 41249960 to 41249973 13 + TSS region transcription start site region 119402
Tssr119403 13 41250128 to 41250211 83 + TSS region transcription start site region 119403
Tssr119404 13 41254080 to 41254082 2 + TSS region transcription start site region 119404
Gm17364 13 41273803 to 41273977 174 - protein coding gene predicted gene, 17364
D13Mit89 13 41287484 to 41287612 128 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 89
D13Mit62 13 41306659 to 41306832 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 62
Nedd9 13 41309916 to 41487360 177444 - protein coding gene neural precursor cell expressed, developmentally down-regulated gene 9
Cpgi5500 13 41358553 to 41359165 612 CpG island CpG island 5500
Tssr122194 13 41358990 to 41359006 16 - TSS region transcription start site region 122194
Tssr122195 13 41359877 to 41359881 4 - TSS region transcription start site region 122195
Gm26877 13 41359971 to 41370908 10937 + antisense lncRNA gene predicted gene, 26877
Gm48571 13 41379956 to 41384725 4769 + antisense lncRNA gene predicted gene, 48571
Tssr4050 13 41381437 to 41381443 6 - TSS region transcription start site region 4050
A130026F07Rik 13 41388723 to 41390796 2073 unclassified gene RIKEN cDNA A130026F07 gene
Gm48570 13 41402291 to 41403353 1062 + antisense lncRNA gene predicted gene, 48570
Gm32448 13 41407412 to 41411210 3798 + lncRNA gene predicted gene, 32448
Tssr122196 13 41423227 to 41423243 16 - TSS region transcription start site region 122196
Tssr122197 13 41424979 to 41424993 14 - TSS region transcription start site region 122197
Tssr122198 13 41425043 to 41425096 53 - TSS region transcription start site region 122198
Tssr122199 13 41425127 to 41425146 19 - TSS region transcription start site region 122199
Tssr122200 13 41425156 to 41425194 38 - TSS region transcription start site region 122200
Tssr122201 13 41425240 to 41425256 16 - TSS region transcription start site region 122201
Tssr122202 13 41425366 to 41425379 13 - TSS region transcription start site region 122202
Tssr122203 13 41425996 to 41426010 14 - TSS region transcription start site region 122203
D13Mit118 13 41457333 to 41457480 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 118
Tssr4051 13 41468361 to 41468365 4 - TSS region transcription start site region 4051
Tssr119405 13 41468537 to 41468545 8 + TSS region transcription start site region 119405
Tssr119406 13 41469813 to 41469814 1 + TSS region transcription start site region 119406
Tssr122204 13 41473550 to 41473584 34 - TSS region transcription start site region 122204
Tssr119407 13 41473764 to 41473776 12 + TSS region transcription start site region 119407
Tssr4052 13 41473782 to 41473789 7 + TSS region transcription start site region 4052
Gm48569 13 41476526 to 41477900 1374 - unclassified gene predicted gene, 48569
Gm32401 13 41486649 to 41525087 38438 + antisense lncRNA gene predicted gene, 32401
Tssr122205 13 41486696 to 41486705 9 - TSS region transcription start site region 122205
Tssr122206 13 41486998 to 41487031 33 - TSS region transcription start site region 122206
Tssr119408 13 41487095 to 41487140 45 + TSS region transcription start site region 119408
Tssr119409 13 41487141 to 41487170 29 + TSS region transcription start site region 119409
Tssr122207 13 41487281 to 41487298 17 - TSS region transcription start site region 122207
Tssr122208 13 41487306 to 41487346 40 - TSS region transcription start site region 122208
Tssr122209 13 41487350 to 41487367 17 - TSS region transcription start site region 122209
Gm32184 13 41543005 to 41559913 16908 - lincRNA gene predicted gene, 32184
Tssr4053 13 41569021 to 41569040 19 - TSS region transcription start site region 4053
Tssr119410 13 41569292 to 41569293 1 + TSS region transcription start site region 119410
Tssr119411 13 41569296 to 41569305 9 + TSS region transcription start site region 119411
Tssr4054 13 41569326 to 41569336 10 + TSS region transcription start site region 4054
Tssr4055 13 41569559 to 41569580 21 + TSS region transcription start site region 4055
Gm24819 13 41577909 to 41578074 165 - snRNA gene predicted gene, 24819
Cpgi5501 13 41605164 to 41606724 1560 CpG island CpG island 5501
Tssr122210 13 41605497 to 41605501 4 - TSS region transcription start site region 122210
Tssr122211 13 41605530 to 41605545 15 - TSS region transcription start site region 122211
Tssr119412 13 41605821 to 41605863 42 + TSS region transcription start site region 119412
Tssr119413 13 41605867 to 41605902 35 + TSS region transcription start site region 119413
Tssr119414 13 41605904 to 41605929 25 + TSS region transcription start site region 119414
Tmem170b 13 41606216 to 41641357 35141 + protein coding gene transmembrane protein 170B
Tssr122212 13 41606409 to 41606435 26 - TSS region transcription start site region 122212
Tssr122213 13 41607771 to 41607815 44 - TSS region transcription start site region 122213
Tssr119415 13 41625964 to 41625992 28 + TSS region transcription start site region 119415
Tssr119416 13 41636645 to 41636693 48 + TSS region transcription start site region 119416
Tssr119417 13 41637396 to 41637399 3 + TSS region transcription start site region 119417
Tssr119418 13 41639526 to 41639566 40 + TSS region transcription start site region 119418
Gm5082 13 41649443 to 41656777 7334 + lincRNA gene predicted gene 5082
D13Dcr4 13 41662739 to 41662839 100 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 4
Tssr119419 13 41662929 to 41662935 6 + TSS region transcription start site region 119419
Gm40925 13 41676858 to 41683924 7066 + lncRNA gene predicted gene, 40925
Tssr119420 13 41677184 to 41677192 8 + TSS region transcription start site region 119420
Tssr119421 13 41677200 to 41677211 11 + TSS region transcription start site region 119421
D13Mit229 13 41696392 to 41696506 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 229
Adtrp 13 41763145 to 41847616 84471 - protein coding gene androgen dependent TFPI regulating protein
Tssr122214 13 41800669 to 41800680 11 - TSS region transcription start site region 122214
Tssr119422 13 41800772 to 41800782 10 + TSS region transcription start site region 119422
1700061E18Rik 13 41800783 to 41801795 1012 + antisense lncRNA gene RIKEN cDNA 1700061E18 gene
D13Mit119 13 41820372 to 41820518 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 119
Tssr122215 13 41828314 to 41828325 11 - TSS region transcription start site region 122215
Tssr122216 13 41828337 to 41828402 65 - TSS region transcription start site region 122216
Tssr122217 13 41828418 to 41828444 26 - TSS region transcription start site region 122217
Tssr122218 13 41828468 to 41828475 7 - TSS region transcription start site region 122218
Tssr122219 13 41829079 to 41829107 28 - TSS region transcription start site region 122219
Gm28564 13 41843014 to 41849768 6754 + antisense lncRNA gene predicted gene 28564
Tssr122220 13 41847482 to 41847490 8 - TSS region transcription start site region 122220
Tssr122221 13 41847521 to 41847532 11 - TSS region transcription start site region 122221
Tssr122222 13 41847547 to 41847561 14 - TSS region transcription start site region 122222
Tssr122223 13 41847584 to 41847598 14 - TSS region transcription start site region 122223
Tssr122224 13 41847599 to 41847625 26 - TSS region transcription start site region 122224
Tssr122225 13 41847626 to 41847642 16 - TSS region transcription start site region 122225
Gm37698 13 41850718 to 41851180 462 + unclassified gene predicted gene, 37698
Gm10790 13 41865915 to 41913092 47177 + lncRNA gene predicted gene 10790
Tssr119423 13 41865931 to 41865945 14 + TSS region transcription start site region 119423
Gm22157 13 41901651 to 41901754 103 + snRNA gene predicted gene, 22157
Gm32555 13 41993919 to 42021086 27167 - lncRNA gene predicted gene, 32555
Gm28707 13 42049334 to 42050287 953 + lincRNA gene predicted gene 28707
Tssr119424 13 42049367 to 42049369 2 + TSS region transcription start site region 119424
Cpgi5502 13 42049419 to 42049823 404 CpG island CpG island 5502
Tssr119425 13 42049595 to 42049606 11 + TSS region transcription start site region 119425
Cpgi5503 13 42051230 to 42053557 2327 CpG island CpG island 5503
Tssr119426 13 42051284 to 42051322 38 + TSS region transcription start site region 119426
Tssr119427 13 42051748 to 42051773 25 + TSS region transcription start site region 119427
Tssr119428 13 42051842 to 42051875 33 + TSS region transcription start site region 119428
Hivep1 13 42051970 to 42185030 133060 + protein coding gene human immunodeficiency virus type I enhancer binding protein 1
Tssr119429 13 42051996 to 42052007 11 + TSS region transcription start site region 119429
Tssr119430 13 42052015 to 42052072 57 + TSS region transcription start site region 119430
Tssr119431 13 42052112 to 42052128 16 + TSS region transcription start site region 119431
Tssr119432 13 42052316 to 42052368 52 + TSS region transcription start site region 119432
Tssr122226 13 42052793 to 42052804 11 - TSS region transcription start site region 122226
Tssr122227 13 42052939 to 42052944 5 - TSS region transcription start site region 122227
Tssr119433 13 42053010 to 42053022 12 + TSS region transcription start site region 119433
Tssr119434 13 42069662 to 42069666 4 + TSS region transcription start site region 119434
Tssr119435 13 42103156 to 42103196 40 + TSS region transcription start site region 119435
Tssr119436 13 42149352 to 42149355 3 + TSS region transcription start site region 119436
Tssr122228 13 42174635 to 42174636 1 - TSS region transcription start site region 122228
Cpgi5504 13 42183748 to 42184339 591 CpG island CpG island 5504
Gm32778 13 42186725 to 42199473 12748 + lncRNA gene predicted gene, 32778
4732499D12Rik 13 42199732 to 42203859 4127 unclassified gene RIKEN cDNA 4732499D12 gene
Tssr122229 13 42241747 to 42241755 8 - TSS region transcription start site region 122229
Tssr122230 13 42244435 to 42244442 7 - TSS region transcription start site region 122230
Tssr122231 13 42245760 to 42245768 8 - TSS region transcription start site region 122231
D13Mit138 13 42300805 to 42300948 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 138
Tssr119437 13 42301265 to 42301281 16 + TSS region transcription start site region 119437
Tssr119438 13 42301424 to 42301435 11 + TSS region transcription start site region 119438
Tssr119439 13 42301446 to 42301491 45 + TSS region transcription start site region 119439
Edn1 13 42301476 to 42307990 6514 + protein coding gene endothelin 1
Tssr119440 13 42301509 to 42301518 9 + TSS region transcription start site region 119440
Cpgi5505 13 42301550 to 42302006 456 CpG island CpG island 5505
Tssr119441 13 42301612 to 42301626 14 + TSS region transcription start site region 119441
Tssr119442 13 42301782 to 42301813 31 + TSS region transcription start site region 119442
Tssr119443 13 42301823 to 42301834 11 + TSS region transcription start site region 119443
Tssr119444 13 42301953 to 42301967 14 + TSS region transcription start site region 119444
Gm47118 13 42302298 to 42304991 2693 - antisense lncRNA gene predicted gene, 47118
Tssr119445 13 42305027 to 42305038 11 + TSS region transcription start site region 119445
Tssr119446 13 42307234 to 42307243 9 + TSS region transcription start site region 119446
Tssr119447 13 42307256 to 42307267 11 + TSS region transcription start site region 119447
Tssr119448 13 42307273 to 42307281 8 + TSS region transcription start site region 119448