Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:40977085-41297095

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr122171 13 40984793 to 40984797 4 - TSS region transcription start site region 122171
Cpgi5493 13 41000426 to 41001616 1190 CpG island CpG island 5493
Tssr122172 13 41000914 to 41000940 26 - TSS region transcription start site region 122172
Tssr119388 13 41001002 to 41001052 50 + TSS region transcription start site region 119388
Pak1ip1 13 41001023 to 41013015 11992 + protein coding gene PAK1 interacting protein 1
Tssr122173 13 41001132 to 41001151 19 - TSS region transcription start site region 122173
Tssr119389 13 41001231 to 41001248 17 + TSS region transcription start site region 119389
Tssr119390 13 41001251 to 41001298 47 + TSS region transcription start site region 119390
Tssr119391 13 41001300 to 41001320 20 + TSS region transcription start site region 119391
Cpgi5494 13 41016091 to 41016823 732 CpG island CpG island 5494
Tssr119392 13 41016275 to 41016309 34 + TSS region transcription start site region 119392
Tmem14c 13 41016292 to 41022586 6294 + protein coding gene transmembrane protein 14C
Tssr119393 13 41016323 to 41016335 12 + TSS region transcription start site region 119393
Mak 13 41025008 to 41079706 54698 - protein coding gene male germ cell-associated kinase
Tssr122174 13 41036042 to 41036064 22 - TSS region transcription start site region 122174
Tssr122175 13 41078038 to 41078074 36 - TSS region transcription start site region 122175
Cpgi5495 13 41079186 to 41079827 641 CpG island CpG island 5495
Tssr122176 13 41079546 to 41079557 11 - TSS region transcription start site region 122176
Tssr122177 13 41079600 to 41079622 22 - TSS region transcription start site region 122177
Tssr122178 13 41079628 to 41079662 34 - TSS region transcription start site region 122178
Gm48344 13 41091430 to 41091723 293 + pseudogene predicted gene, 48344
Gcm2 13 41101427 to 41111035 9608 - protein coding gene glial cells missing homolog 2
Cpgi5496 13 41114258 to 41114525 267 CpG island CpG island 5496
Sycp2l 13 41114419 to 41174351 59932 + protein coding gene synaptonemal complex protein 2-like
Tssr4049 13 41137085 to 41137095 10 - TSS region transcription start site region 4049
Gm48510 13 41176888 to 41179030 2142 + lincRNA gene predicted gene, 48510
Elovl2 13 41182382 to 41220403 38021 - protein coding gene elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
Tssr122179 13 41183086 to 41183093 7 - TSS region transcription start site region 122179
Tssr122180 13 41184076 to 41184080 4 - TSS region transcription start site region 122180
Tssr122181 13 41184292 to 41184302 10 - TSS region transcription start site region 122181
Tssr122182 13 41184433 to 41184446 13 - TSS region transcription start site region 122182
Tssr122183 13 41184789 to 41184801 12 - TSS region transcription start site region 122183
Tssr122184 13 41185000 to 41185003 3 - TSS region transcription start site region 122184
Tssr122185 13 41194792 to 41194803 11 - TSS region transcription start site region 122185
Tssr122186 13 41194810 to 41194821 11 - TSS region transcription start site region 122186
Tssr122187 13 41216951 to 41216955 4 - TSS region transcription start site region 122187
Tssr122188 13 41217079 to 41217083 4 - TSS region transcription start site region 122188
Cpgi5497 13 41219798 to 41221019 1221 CpG island CpG island 5497
Tssr122189 13 41220175 to 41220195 20 - TSS region transcription start site region 122189
Tssr122190 13 41220201 to 41220225 24 - TSS region transcription start site region 122190
Tssr122191 13 41220333 to 41220344 11 - TSS region transcription start site region 122191
Tssr122192 13 41220395 to 41220412 17 - TSS region transcription start site region 122192
Cpgi5498 13 41232283 to 41232505 222 CpG island CpG island 5498
Rps17-ps1 13 41234694 to 41235077 383 - pseudogene ribosomal protein S17, pseudogene 1
Tssr122193 13 41235097 to 41235102 5 - TSS region transcription start site region 122193
Tssr119394 13 41236022 to 41236066 44 + TSS region transcription start site region 119394
Tssr119395 13 41236289 to 41236300 11 + TSS region transcription start site region 119395
Tssr119396 13 41236317 to 41236334 17 + TSS region transcription start site region 119396
Tssr119397 13 41236335 to 41236347 12 + TSS region transcription start site region 119397
Gm32063 13 41236345 to 41241478 5133 + lincRNA gene predicted gene, 32063
Cpgi5499 13 41249441 to 41250616 1175 CpG island CpG island 5499
Tssr119398 13 41249747 to 41249768 21 + TSS region transcription start site region 119398
Tssr119399 13 41249811 to 41249837 26 + TSS region transcription start site region 119399
Tssr119400 13 41249841 to 41249863 22 + TSS region transcription start site region 119400
Smim13 13 41249844 to 41276577 26733 + protein coding gene small integral membrane protein 13
Tssr119401 13 41249876 to 41249950 74 + TSS region transcription start site region 119401
Tssr119402 13 41249960 to 41249973 13 + TSS region transcription start site region 119402
Tssr119403 13 41250128 to 41250211 83 + TSS region transcription start site region 119403
Tssr119404 13 41254080 to 41254082 2 + TSS region transcription start site region 119404
Gm17364 13 41273803 to 41273977 174 - protein coding gene predicted gene, 17364
D13Mit89 13 41287484 to 41287612 128 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 89