Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:40914419-41374351

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gcnt2 13 40859768 to 40960892 101124 + protein coding gene glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
Gm31683 13 40907332 to 40917895 10563 - antisense lncRNA gene predicted gene, 31683
Cpgi5492 13 40917432 to 40918098 666 CpG island CpG island 5492
Tssr119382 13 40917626 to 40917657 31 + TSS region transcription start site region 119382
Tssr119383 13 40918147 to 40918157 10 + TSS region transcription start site region 119383
Tssr119384 13 40918526 to 40918538 12 + TSS region transcription start site region 119384
Tssr119385 13 40918681 to 40918689 8 + TSS region transcription start site region 119385
A730081D07Rik 13 40927834 to 40960010 32176 - antisense lncRNA gene RIKEN cDNA A730081D07 gene
Tssr119386 13 40944371 to 40944384 13 + TSS region transcription start site region 119386
5530402G07Rik 13 40948889 to 40949631 742 - unclassified gene RIKEN cDNA 5530402G07 gene
Tssr122170 13 40968710 to 40968721 11 - TSS region transcription start site region 122170
Tssr119387 13 40971561 to 40971569 8 + TSS region transcription start site region 119387
Tssr122171 13 40984793 to 40984797 4 - TSS region transcription start site region 122171
Cpgi5493 13 41000426 to 41001616 1190 CpG island CpG island 5493
Tssr122172 13 41000914 to 41000940 26 - TSS region transcription start site region 122172
Tssr119388 13 41001002 to 41001052 50 + TSS region transcription start site region 119388
Pak1ip1 13 41001023 to 41013015 11992 + protein coding gene PAK1 interacting protein 1
Tssr122173 13 41001132 to 41001151 19 - TSS region transcription start site region 122173
Tssr119389 13 41001231 to 41001248 17 + TSS region transcription start site region 119389
Tssr119390 13 41001251 to 41001298 47 + TSS region transcription start site region 119390
Tssr119391 13 41001300 to 41001320 20 + TSS region transcription start site region 119391
Cpgi5494 13 41016091 to 41016823 732 CpG island CpG island 5494
Tssr119392 13 41016275 to 41016309 34 + TSS region transcription start site region 119392
Tmem14c 13 41016292 to 41022586 6294 + protein coding gene transmembrane protein 14C
Tssr119393 13 41016323 to 41016335 12 + TSS region transcription start site region 119393
Mak 13 41025008 to 41079706 54698 - protein coding gene male germ cell-associated kinase
Tssr122174 13 41036042 to 41036064 22 - TSS region transcription start site region 122174
Tssr122175 13 41078038 to 41078074 36 - TSS region transcription start site region 122175
Cpgi5495 13 41079186 to 41079827 641 CpG island CpG island 5495
Tssr122176 13 41079546 to 41079557 11 - TSS region transcription start site region 122176
Tssr122177 13 41079600 to 41079622 22 - TSS region transcription start site region 122177
Tssr122178 13 41079628 to 41079662 34 - TSS region transcription start site region 122178
Gm48344 13 41091430 to 41091723 293 + pseudogene predicted gene, 48344
Gcm2 13 41101427 to 41111035 9608 - protein coding gene glial cells missing homolog 2
Cpgi5496 13 41114258 to 41114525 267 CpG island CpG island 5496
Sycp2l 13 41114419 to 41174351 59932 + protein coding gene synaptonemal complex protein 2-like
Tssr4049 13 41137085 to 41137095 10 - TSS region transcription start site region 4049
Gm48510 13 41176888 to 41179030 2142 + lincRNA gene predicted gene, 48510
Elovl2 13 41182382 to 41220403 38021 - protein coding gene elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
Tssr122179 13 41183086 to 41183093 7 - TSS region transcription start site region 122179
Tssr122180 13 41184076 to 41184080 4 - TSS region transcription start site region 122180
Tssr122181 13 41184292 to 41184302 10 - TSS region transcription start site region 122181
Tssr122182 13 41184433 to 41184446 13 - TSS region transcription start site region 122182
Tssr122183 13 41184789 to 41184801 12 - TSS region transcription start site region 122183
Tssr122184 13 41185000 to 41185003 3 - TSS region transcription start site region 122184
Tssr122185 13 41194792 to 41194803 11 - TSS region transcription start site region 122185
Tssr122186 13 41194810 to 41194821 11 - TSS region transcription start site region 122186
Tssr122187 13 41216951 to 41216955 4 - TSS region transcription start site region 122187
Tssr122188 13 41217079 to 41217083 4 - TSS region transcription start site region 122188
Cpgi5497 13 41219798 to 41221019 1221 CpG island CpG island 5497
Tssr122189 13 41220175 to 41220195 20 - TSS region transcription start site region 122189
Tssr122190 13 41220201 to 41220225 24 - TSS region transcription start site region 122190
Tssr122191 13 41220333 to 41220344 11 - TSS region transcription start site region 122191
Tssr122192 13 41220395 to 41220412 17 - TSS region transcription start site region 122192
Cpgi5498 13 41232283 to 41232505 222 CpG island CpG island 5498
Rps17-ps1 13 41234694 to 41235077 383 - pseudogene ribosomal protein S17, pseudogene 1
Tssr122193 13 41235097 to 41235102 5 - TSS region transcription start site region 122193
Tssr119394 13 41236022 to 41236066 44 + TSS region transcription start site region 119394
Tssr119395 13 41236289 to 41236300 11 + TSS region transcription start site region 119395
Tssr119396 13 41236317 to 41236334 17 + TSS region transcription start site region 119396
Tssr119397 13 41236335 to 41236347 12 + TSS region transcription start site region 119397
Gm32063 13 41236345 to 41241478 5133 + lincRNA gene predicted gene, 32063
Cpgi5499 13 41249441 to 41250616 1175 CpG island CpG island 5499
Tssr119398 13 41249747 to 41249768 21 + TSS region transcription start site region 119398
Tssr119399 13 41249811 to 41249837 26 + TSS region transcription start site region 119399
Tssr119400 13 41249841 to 41249863 22 + TSS region transcription start site region 119400
Smim13 13 41249844 to 41276577 26733 + protein coding gene small integral membrane protein 13
Tssr119401 13 41249876 to 41249950 74 + TSS region transcription start site region 119401
Tssr119402 13 41249960 to 41249973 13 + TSS region transcription start site region 119402
Tssr119403 13 41250128 to 41250211 83 + TSS region transcription start site region 119403
Tssr119404 13 41254080 to 41254082 2 + TSS region transcription start site region 119404
Gm17364 13 41273803 to 41273977 174 - protein coding gene predicted gene, 17364
D13Mit89 13 41287484 to 41287612 128 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 89
D13Mit62 13 41306659 to 41306832 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 62
Nedd9 13 41309916 to 41487360 177444 - protein coding gene neural precursor cell expressed, developmentally down-regulated gene 9
Cpgi5500 13 41358553 to 41359165 612 CpG island CpG island 5500
Tssr122194 13 41358990 to 41359006 16 - TSS region transcription start site region 122194
Tssr122195 13 41359877 to 41359881 4 - TSS region transcription start site region 122195
Gm26877 13 41359971 to 41370908 10937 + antisense lncRNA gene predicted gene, 26877