MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 13:40439320-40726479

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20 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Cpgi5476	13	40461871 to 40462028	157		CpG island	CpG island 5476
Gm8352	13	40496254 to 40497473	1219	+	pseudogene	predicted gene 8352
Gm47038	13	40533570 to 40533947	377	+	pseudogene	predicted gene, 47038
Tssr119368	13	40545563 to 40545564	1	+	TSS region	transcription start site region 119368
Tssr119369	13	40553321 to 40553326	5	+	TSS region	transcription start site region 119369
Gm47039	13	40559320 to 40606479	47159	-	lincRNA gene	predicted gene, 47039
Gm47041	13	40642607 to 40644649	2042	-	unclassified gene	predicted gene, 47041
Tssr122149	13	40683885 to 40683896	11	-	TSS region	transcription start site region 122149
Cpgi5477	13	40702730 to 40703078	348		CpG island	CpG island 5477
Cpgi5478	13	40703947 to 40704533	586		CpG island	CpG island 5478
Gm9979	13	40704005 to 40707949	3944	+	lincRNA gene	predicted gene 9979
Cpgi5479	13	40704874 to 40705473	599		CpG island	CpG island 5479
Cpgi5480	13	40708911 to 40709299	388		CpG island	CpG island 5480
Tfap2a	13	40715302 to 40738237	22935	-	protein coding gene	transcription factor AP-2, alpha
Cpgi5481	13	40716816 to 40717259	443		CpG island	CpG island 5481
Tssr119370	13	40717137 to 40717147	10	+	TSS region	transcription start site region 119370
Cpgi5482	13	40722739 to 40723547	808		CpG island	CpG island 5482
Gm47061	13	40723110 to 40725449	2339	+	antisense lncRNA gene	predicted gene, 47061
Tssr122150	13	40725186 to 40725215	29	-	TSS region	transcription start site region 122150
Tssr122151	13	40725826 to 40725831	5	-	TSS region	transcription start site region 122151