Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:39391937-42381944

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289 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mcsq4 13 18322000 to 39773000 21451000 QTL methacholine sensitivity QTL 4, final
Gm47348 13 39440565 to 39449671 9106 + lincRNA gene predicted gene, 47348
Gm3509 13 39463227 to 39467017 3790 - lincRNA gene predicted gene 3509
Gm47349 13 39467347 to 39470134 2787 + lincRNA gene predicted gene, 47349
Gm47351 13 39530598 to 39533103 2505 - lincRNA gene predicted gene, 47351
Gm47352 13 39571583 to 39699499 127916 + lincRNA gene predicted gene, 47352
Gm32243 13 39617668 to 39647247 29579 - lincRNA gene predicted gene, 32243
Gm5195 13 39757308 to 39757967 659 + pseudogene predicted gene 5195
Gm40923 13 39771790 to 39791384 19594 - lincRNA gene predicted gene, 40923
Gm46393 13 39791448 to 39794937 3489 + lncRNA gene predicted gene, 46393
Gm47361 13 39796321 to 39796944 623 + pseudogene predicted gene, 47361
Gm46394 13 39803393 to 39806238 2845 - lncRNA gene predicted gene, 46394
A230103O09Rik 13 39823418 to 39831052 7634 + unclassified non-coding RNA gene RIKEN cDNA A230103O09 gene
Tssr119366 13 39824175 to 39824213 38 + TSS region transcription start site region 119366
Cpgi5474 13 39824216 to 39824416 200 CpG island CpG island 5474
Gm23972 13 39858863 to 39859027 164 - snRNA gene predicted gene, 23972
Gm47316 13 39877035 to 39884381 7346 - lincRNA gene predicted gene, 47316
Tssr122148 13 39899287 to 39899299 12 - TSS region transcription start site region 122148
Gm40924 13 39912866 to 39923211 10345 - lncRNA gene predicted gene, 40924
Ofcc1 13 40001882 to 40288011 286129 - protein coding gene orofacial cleft 1 candidate 1
Tssr119367 13 40321433 to 40321442 9 + TSS region transcription start site region 119367
Cpgi5475 13 40360085 to 40360247 162 CpG island CpG island 5475
Cpgi5476 13 40461871 to 40462028 157 CpG island CpG island 5476
Gm8352 13 40496254 to 40497473 1219 + pseudogene predicted gene 8352
Gm47038 13 40533570 to 40533947 377 + pseudogene predicted gene, 47038
Tssr119368 13 40545563 to 40545564 1 + TSS region transcription start site region 119368
Tssr119369 13 40553321 to 40553326 5 + TSS region transcription start site region 119369
Gm47039 13 40559320 to 40606479 47159 - lincRNA gene predicted gene, 47039
Gm47041 13 40642607 to 40644649 2042 - unclassified gene predicted gene, 47041
Tssr122149 13 40683885 to 40683896 11 - TSS region transcription start site region 122149
Cpgi5477 13 40702730 to 40703078 348 CpG island CpG island 5477
Cpgi5478 13 40703947 to 40704533 586 CpG island CpG island 5478
Gm9979 13 40704005 to 40707949 3944 + lincRNA gene predicted gene 9979
Cpgi5479 13 40704874 to 40705473 599 CpG island CpG island 5479
Cpgi5480 13 40708911 to 40709299 388 CpG island CpG island 5480
Tfap2a 13 40715302 to 40738237 22935 - protein coding gene transcription factor AP-2, alpha
Cpgi5481 13 40716816 to 40717259 443 CpG island CpG island 5481
Tssr119370 13 40717137 to 40717147 10 + TSS region transcription start site region 119370
Cpgi5482 13 40722739 to 40723547 808 CpG island CpG island 5482
Gm47061 13 40723110 to 40725449 2339 + antisense lncRNA gene predicted gene, 47061
Tssr122150 13 40725186 to 40725215 29 - TSS region transcription start site region 122150
Tssr122151 13 40725826 to 40725831 5 - TSS region transcription start site region 122151
Tssr122152 13 40726912 to 40726913 1 - TSS region transcription start site region 122152
Gm26688 13 40727808 to 40735162 7354 + antisense lncRNA gene predicted gene, 26688
Cpgi5483 13 40728164 to 40728890 726 CpG island CpG island 5483
Tssr122153 13 40728941 to 40728945 4 - TSS region transcription start site region 122153
Cpgi5484 13 40729635 to 40731955 2320 CpG island CpG island 5484
Tssr122154 13 40730096 to 40730100 4 - TSS region transcription start site region 122154
Tssr122155 13 40730416 to 40730429 13 - TSS region transcription start site region 122155
Tssr122156 13 40730731 to 40730739 8 - TSS region transcription start site region 122156
Tssr122157 13 40730750 to 40730762 12 - TSS region transcription start site region 122157
Tssr122158 13 40730781 to 40730798 17 - TSS region transcription start site region 122158
Tssr122159 13 40730820 to 40730825 5 - TSS region transcription start site region 122159
Tssr122160 13 40730867 to 40730879 12 - TSS region transcription start site region 122160
Tssr122161 13 40730995 to 40731029 34 - TSS region transcription start site region 122161
Tssr122162 13 40731044 to 40731055 11 - TSS region transcription start site region 122162
Tssr122163 13 40731592 to 40731632 40 - TSS region transcription start site region 122163
Tssr122164 13 40731661 to 40731670 9 - TSS region transcription start site region 122164
Cpgi5485 13 40732766 to 40733159 393 CpG island CpG island 5485
Cpgi5486 13 40733451 to 40734871 1420 CpG island CpG island 5486
Tssr122165 13 40733768 to 40733836 68 - TSS region transcription start site region 122165
Tssr122166 13 40733968 to 40733991 23 - TSS region transcription start site region 122166
Tssr119371 13 40734131 to 40734137 6 + TSS region transcription start site region 119371
Cpgi5487 13 40735921 to 40736152 231 CpG island CpG island 5487
Gm47067 13 40737568 to 40739021 1453 + antisense lncRNA gene predicted gene, 47067
Cpgi5488 13 40737697 to 40738205 508 CpG island CpG island 5488
Tssr122167 13 40738236 to 40738246 10 - TSS region transcription start site region 122167
Tssr122168 13 40738373 to 40738386 13 - TSS region transcription start site region 122168
Cpgi5489 13 40738520 to 40738791 271 CpG island CpG island 5489
Cpgi5490 13 40742025 to 40742360 335 CpG island CpG island 5490
Cpgi5491 13 40744621 to 40745132 511 CpG island CpG island 5491
Gm48107 13 40754060 to 40754996 936 - lincRNA gene predicted gene, 48107
Gm6245 13 40778040 to 40778804 764 + pseudogene predicted gene 6245
Gm7201 13 40830797 to 40838656 7859 - pseudogene predicted gene 7201
Gm35160 13 40846739 to 40847554 815 + protein coding gene predicted gene, 35160
Gcnt2 13 40859768 to 40960892 101124 + protein coding gene glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
Tssr119372 13 40859808 to 40859822 14 + TSS region transcription start site region 119372
Tssr119373 13 40859927 to 40859989 62 + TSS region transcription start site region 119373
Tssr119374 13 40860124 to 40860139 15 + TSS region transcription start site region 119374
Tssr119375 13 40860156 to 40860187 31 + TSS region transcription start site region 119375
Tssr119376 13 40860202 to 40860235 33 + TSS region transcription start site region 119376
Mir5124a 13 40865791 to 40865862 71 + miRNA gene microRNA 5124a
Gm48192 13 40873498 to 40874189 691 - unclassified gene predicted gene, 48192
Tssr119377 13 40886797 to 40886818 21 + TSS region transcription start site region 119377
Tssr119378 13 40886937 to 40886944 7 + TSS region transcription start site region 119378
Tssr119379 13 40887093 to 40887116 23 + TSS region transcription start site region 119379
Tssr119380 13 40887181 to 40887199 18 + TSS region transcription start site region 119380
Tssr119381 13 40887235 to 40887252 17 + TSS region transcription start site region 119381
Tssr122169 13 40892673 to 40892686 13 - TSS region transcription start site region 122169
Gm31683 13 40907332 to 40917895 10563 - antisense lncRNA gene predicted gene, 31683
Gm48188 13 40911504 to 40912207 703 - pseudogene predicted gene, 48188
D13Mit61 13 40913258 to 40913421 163 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 61
Cpgi5492 13 40917432 to 40918098 666 CpG island CpG island 5492
Tssr119382 13 40917626 to 40917657 31 + TSS region transcription start site region 119382
Tssr119383 13 40918147 to 40918157 10 + TSS region transcription start site region 119383
Tssr119384 13 40918526 to 40918538 12 + TSS region transcription start site region 119384
Tssr119385 13 40918681 to 40918689 8 + TSS region transcription start site region 119385
A730081D07Rik 13 40927834 to 40960010 32176 - antisense lncRNA gene RIKEN cDNA A730081D07 gene
Tssr119386 13 40944371 to 40944384 13 + TSS region transcription start site region 119386
5530402G07Rik 13 40948889 to 40949631 742 - unclassified gene RIKEN cDNA 5530402G07 gene
Tssr122170 13 40968710 to 40968721 11 - TSS region transcription start site region 122170
Tssr119387 13 40971561 to 40971569 8 + TSS region transcription start site region 119387
Tssr122171 13 40984793 to 40984797 4 - TSS region transcription start site region 122171
Cpgi5493 13 41000426 to 41001616 1190 CpG island CpG island 5493
Tssr122172 13 41000914 to 41000940 26 - TSS region transcription start site region 122172
Tssr119388 13 41001002 to 41001052 50 + TSS region transcription start site region 119388
Pak1ip1 13 41001023 to 41013015 11992 + protein coding gene PAK1 interacting protein 1
Tssr122173 13 41001132 to 41001151 19 - TSS region transcription start site region 122173
Tssr119389 13 41001231 to 41001248 17 + TSS region transcription start site region 119389
Tssr119390 13 41001251 to 41001298 47 + TSS region transcription start site region 119390
Tssr119391 13 41001300 to 41001320 20 + TSS region transcription start site region 119391
Cpgi5494 13 41016091 to 41016823 732 CpG island CpG island 5494
Tssr119392 13 41016275 to 41016309 34 + TSS region transcription start site region 119392
Tmem14c 13 41016292 to 41022586 6294 + protein coding gene transmembrane protein 14C
Tssr119393 13 41016323 to 41016335 12 + TSS region transcription start site region 119393
Mak 13 41025008 to 41079706 54698 - protein coding gene male germ cell-associated kinase
Tssr122174 13 41036042 to 41036064 22 - TSS region transcription start site region 122174
Tssr122175 13 41078038 to 41078074 36 - TSS region transcription start site region 122175
Cpgi5495 13 41079186 to 41079827 641 CpG island CpG island 5495
Tssr122176 13 41079546 to 41079557 11 - TSS region transcription start site region 122176
Tssr122177 13 41079600 to 41079622 22 - TSS region transcription start site region 122177
Tssr122178 13 41079628 to 41079662 34 - TSS region transcription start site region 122178
Gm48344 13 41091430 to 41091723 293 + pseudogene predicted gene, 48344
Gcm2 13 41101427 to 41111035 9608 - protein coding gene glial cells missing homolog 2
Cpgi5496 13 41114258 to 41114525 267 CpG island CpG island 5496
Sycp2l 13 41114419 to 41174351 59932 + protein coding gene synaptonemal complex protein 2-like
Tssr4049 13 41137085 to 41137095 10 - TSS region transcription start site region 4049
Gm48510 13 41176888 to 41179030 2142 + lincRNA gene predicted gene, 48510
Elovl2 13 41182382 to 41220403 38021 - protein coding gene elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
Tssr122179 13 41183086 to 41183093 7 - TSS region transcription start site region 122179
Tssr122180 13 41184076 to 41184080 4 - TSS region transcription start site region 122180
Tssr122181 13 41184292 to 41184302 10 - TSS region transcription start site region 122181
Tssr122182 13 41184433 to 41184446 13 - TSS region transcription start site region 122182
Tssr122183 13 41184789 to 41184801 12 - TSS region transcription start site region 122183
Tssr122184 13 41185000 to 41185003 3 - TSS region transcription start site region 122184
Tssr122185 13 41194792 to 41194803 11 - TSS region transcription start site region 122185
Tssr122186 13 41194810 to 41194821 11 - TSS region transcription start site region 122186
Tssr122187 13 41216951 to 41216955 4 - TSS region transcription start site region 122187
Tssr122188 13 41217079 to 41217083 4 - TSS region transcription start site region 122188
Cpgi5497 13 41219798 to 41221019 1221 CpG island CpG island 5497
Tssr122189 13 41220175 to 41220195 20 - TSS region transcription start site region 122189
Tssr122190 13 41220201 to 41220225 24 - TSS region transcription start site region 122190
Tssr122191 13 41220333 to 41220344 11 - TSS region transcription start site region 122191
Tssr122192 13 41220395 to 41220412 17 - TSS region transcription start site region 122192
Cpgi5498 13 41232283 to 41232505 222 CpG island CpG island 5498
Rps17-ps1 13 41234694 to 41235077 383 - pseudogene ribosomal protein S17, pseudogene 1
Tssr122193 13 41235097 to 41235102 5 - TSS region transcription start site region 122193
Tssr119394 13 41236022 to 41236066 44 + TSS region transcription start site region 119394
Tssr119395 13 41236289 to 41236300 11 + TSS region transcription start site region 119395
Tssr119396 13 41236317 to 41236334 17 + TSS region transcription start site region 119396
Tssr119397 13 41236335 to 41236347 12 + TSS region transcription start site region 119397
Gm32063 13 41236345 to 41241478 5133 + lincRNA gene predicted gene, 32063
Cpgi5499 13 41249441 to 41250616 1175 CpG island CpG island 5499
Tssr119398 13 41249747 to 41249768 21 + TSS region transcription start site region 119398
Tssr119399 13 41249811 to 41249837 26 + TSS region transcription start site region 119399
Tssr119400 13 41249841 to 41249863 22 + TSS region transcription start site region 119400
Smim13 13 41249844 to 41276577 26733 + protein coding gene small integral membrane protein 13
Tssr119401 13 41249876 to 41249950 74 + TSS region transcription start site region 119401
Tssr119402 13 41249960 to 41249973 13 + TSS region transcription start site region 119402
Tssr119403 13 41250128 to 41250211 83 + TSS region transcription start site region 119403
Tssr119404 13 41254080 to 41254082 2 + TSS region transcription start site region 119404
Gm17364 13 41273803 to 41273977 174 - protein coding gene predicted gene, 17364
D13Mit89 13 41287484 to 41287612 128 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 89
D13Mit62 13 41306659 to 41306832 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 62
Nedd9 13 41309916 to 41487360 177444 - protein coding gene neural precursor cell expressed, developmentally down-regulated gene 9
Cpgi5500 13 41358553 to 41359165 612 CpG island CpG island 5500
Tssr122194 13 41358990 to 41359006 16 - TSS region transcription start site region 122194
Tssr122195 13 41359877 to 41359881 4 - TSS region transcription start site region 122195
Gm26877 13 41359971 to 41370908 10937 + antisense lncRNA gene predicted gene, 26877
Gm48571 13 41379956 to 41384725 4769 + antisense lncRNA gene predicted gene, 48571
Tssr4050 13 41381437 to 41381443 6 - TSS region transcription start site region 4050
A130026F07Rik 13 41388723 to 41390796 2073 unclassified gene RIKEN cDNA A130026F07 gene
Gm48570 13 41402291 to 41403353 1062 + antisense lncRNA gene predicted gene, 48570
Gm32448 13 41407412 to 41411210 3798 + lncRNA gene predicted gene, 32448
Tssr122196 13 41423227 to 41423243 16 - TSS region transcription start site region 122196
Tssr122197 13 41424979 to 41424993 14 - TSS region transcription start site region 122197
Tssr122198 13 41425043 to 41425096 53 - TSS region transcription start site region 122198
Tssr122199 13 41425127 to 41425146 19 - TSS region transcription start site region 122199
Tssr122200 13 41425156 to 41425194 38 - TSS region transcription start site region 122200
Tssr122201 13 41425240 to 41425256 16 - TSS region transcription start site region 122201
Tssr122202 13 41425366 to 41425379 13 - TSS region transcription start site region 122202
Tssr122203 13 41425996 to 41426010 14 - TSS region transcription start site region 122203
D13Mit118 13 41457333 to 41457480 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 118
Tssr4051 13 41468361 to 41468365 4 - TSS region transcription start site region 4051
Tssr119405 13 41468537 to 41468545 8 + TSS region transcription start site region 119405
Tssr119406 13 41469813 to 41469814 1 + TSS region transcription start site region 119406
Tssr122204 13 41473550 to 41473584 34 - TSS region transcription start site region 122204
Tssr119407 13 41473764 to 41473776 12 + TSS region transcription start site region 119407
Tssr4052 13 41473782 to 41473789 7 + TSS region transcription start site region 4052
Gm48569 13 41476526 to 41477900 1374 - unclassified gene predicted gene, 48569
Gm32401 13 41486649 to 41525087 38438 + antisense lncRNA gene predicted gene, 32401
Tssr122205 13 41486696 to 41486705 9 - TSS region transcription start site region 122205
Tssr122206 13 41486998 to 41487031 33 - TSS region transcription start site region 122206
Tssr119408 13 41487095 to 41487140 45 + TSS region transcription start site region 119408
Tssr119409 13 41487141 to 41487170 29 + TSS region transcription start site region 119409
Tssr122207 13 41487281 to 41487298 17 - TSS region transcription start site region 122207
Tssr122208 13 41487306 to 41487346 40 - TSS region transcription start site region 122208
Tssr122209 13 41487350 to 41487367 17 - TSS region transcription start site region 122209
Gm32184 13 41543005 to 41559913 16908 - lincRNA gene predicted gene, 32184
Tssr4053 13 41569021 to 41569040 19 - TSS region transcription start site region 4053