Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:38727668-40537247

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbd2 13 17014923 to 38763430 21748507 QTL peak bone density 2
Mcsq4 13 18322000 to 39773000 21451000 QTL methacholine sensitivity QTL 4, final
D13Mit88 13 38763262 to 38763430 168 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 88
Gm47511 13 38775824 to 38777191 1367 + lincRNA gene predicted gene, 47511
Gm47509 13 38782161 to 38825755 43594 - lincRNA gene predicted gene, 47509
Gm46392 13 38861730 to 38908237 46507 + lincRNA gene predicted gene, 46392
Gm22035 13 38898360 to 38898587 227 - unclassified non-coding RNA gene predicted gene, 22035
Gm47530 13 38917153 to 38919219 2066 - unclassified gene predicted gene, 47530
Slc35b3 13 38932140 to 38960875 28735 - protein coding gene solute carrier family 35, member B3
Gm26514 13 38945543 to 38951313 5770 - lincRNA gene predicted gene, 26514
Cpgi5473 13 38960074 to 38960896 822 CpG island CpG island 5473
Tssr122142 13 38960457 to 38960466 9 - TSS region transcription start site region 122142
Tssr122143 13 38960478 to 38960496 18 - TSS region transcription start site region 122143
Tssr122144 13 38960498 to 38960539 41 - TSS region transcription start site region 122144
Tssr122145 13 38960542 to 38960554 12 - TSS region transcription start site region 122145
5033403F01Rik 13 38960619 to 38966297 5678 + antisense lncRNA gene RIKEN cDNA 5033403F01 gene
Tssr122146 13 38960846 to 38960883 37 - TSS region transcription start site region 122146
Tssr122147 13 38967115 to 38967150 35 - TSS region transcription start site region 122147
D13Dcr8 13 38968409 to 38968505 96 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 8
D13Mit137 13 39265532 to 39265662 130 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 137
Gm47348 13 39440565 to 39449671 9106 + lincRNA gene predicted gene, 47348
Gm3509 13 39463227 to 39467017 3790 - lincRNA gene predicted gene 3509
Gm47349 13 39467347 to 39470134 2787 + lincRNA gene predicted gene, 47349
Gm47351 13 39530598 to 39533103 2505 - lincRNA gene predicted gene, 47351
Gm47352 13 39571583 to 39699499 127916 + lincRNA gene predicted gene, 47352
Gm32243 13 39617668 to 39647247 29579 - lincRNA gene predicted gene, 32243
Gm5195 13 39757308 to 39757967 659 + pseudogene predicted gene 5195
Gm40923 13 39771790 to 39791384 19594 - lincRNA gene predicted gene, 40923
Gm46393 13 39791448 to 39794937 3489 + lncRNA gene predicted gene, 46393
Gm47361 13 39796321 to 39796944 623 + pseudogene predicted gene, 47361
Gm46394 13 39803393 to 39806238 2845 - lncRNA gene predicted gene, 46394
A230103O09Rik 13 39823418 to 39831052 7634 + unclassified non-coding RNA gene RIKEN cDNA A230103O09 gene
Tssr119366 13 39824175 to 39824213 38 + TSS region transcription start site region 119366
Cpgi5474 13 39824216 to 39824416 200 CpG island CpG island 5474
Gm23972 13 39858863 to 39859027 164 - snRNA gene predicted gene, 23972
Gm47316 13 39877035 to 39884381 7346 - lincRNA gene predicted gene, 47316
Tssr122148 13 39899287 to 39899299 12 - TSS region transcription start site region 122148
Gm40924 13 39912866 to 39923211 10345 - lncRNA gene predicted gene, 40924
Ofcc1 13 40001882 to 40288011 286129 - protein coding gene orofacial cleft 1 candidate 1
Tssr119367 13 40321433 to 40321442 9 + TSS region transcription start site region 119367
Cpgi5475 13 40360085 to 40360247 162 CpG island CpG island 5475
Cpgi5476 13 40461871 to 40462028 157 CpG island CpG island 5476
Gm8352 13 40496254 to 40497473 1219 + pseudogene predicted gene 8352
Gm47038 13 40533570 to 40533947 377 + pseudogene predicted gene, 47038