Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:3839329-7889351

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227 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Calm5 13 3854173 to 3854761 588 + protein coding gene calmodulin 5
Net1 13 3882018 to 3918220 36202 - protein coding gene neuroepithelial cell transforming gene 1
Cpgi5250 13 3893329 to 3893703 374 CpG island CpG island 5250
Tssr121291 13 3893506 to 3893553 47 - TSS region transcription start site region 121291
Tssr121292 13 3893556 to 3893589 33 - TSS region transcription start site region 121292
Tssr121293 13 3894295 to 3894300 5 - TSS region transcription start site region 121293
Gm47813 13 3899209 to 3900248 1039 - unclassified gene predicted gene, 47813
Tssr121294 13 3910492 to 3910496 4 - TSS region transcription start site region 121294
Cpgi5251 13 3917603 to 3918274 671 CpG island CpG island 5251
Tssr121295 13 3918144 to 3918151 7 - TSS region transcription start site region 121295
Tssr121296 13 3918157 to 3918219 62 - TSS region transcription start site region 121296
Tubal3 13 3924635 to 3935277 10642 + protein coding gene tubulin, alpha-like 3
Tssr118208 13 3924671 to 3924684 13 + TSS region transcription start site region 118208
Tssr118209 13 3924686 to 3924713 27 + TSS region transcription start site region 118209
Ucn3 13 3940688 to 3945349 4661 - protein coding gene urocortin 3
Gm22460 13 3957119 to 3957242 123 - miRNA gene predicted gene, 22460
Tssr118210 13 3995361 to 3995365 4 + TSS region transcription start site region 118210
Gm47853 13 4023169 to 4025827 2658 + pseudogene predicted gene, 47853
Gm18857 13 4037952 to 4041308 3356 + pseudogene predicted gene, 18857
Tssr118211 13 4048972 to 4048983 11 + TSS region transcription start site region 118211
Tssr118212 13 4049001 to 4049030 29 + TSS region transcription start site region 118212
Tssr118213 13 4049040 to 4049043 3 + TSS region transcription start site region 118213
Tssr118214 13 4059565 to 4059586 21 + TSS region transcription start site region 118214
Tssr118215 13 4059587 to 4059600 13 + TSS region transcription start site region 118215
Akr1c14 13 4059591 to 4090422 30831 + protein coding gene aldo-keto reductase family 1, member C14
Tssr118216 13 4059671 to 4059672 1 + TSS region transcription start site region 118216
Gm47904 13 4091286 to 4092636 1350 + lincRNA gene predicted gene, 47904
Gm47905 13 4097498 to 4100831 3333 + unclassified gene predicted gene, 47905
Akr1c18 13 4132615 to 4150651 18036 - protein coding gene aldo-keto reductase family 1, member C18
Tssr121297 13 4150633 to 4150653 20 - TSS region transcription start site region 121297
Tssr121298 13 4150659 to 4150673 14 - TSS region transcription start site region 121298
Gm47925 13 4166503 to 4172845 6342 + lincRNA gene predicted gene, 47925
Gm2123 13 4168646 to 4170980 2334 - pseudogene predicted gene 2123
Tssr118217 13 4191163 to 4191200 37 + TSS region transcription start site region 118217
Akr1c13 13 4191166 to 4205604 14438 + protein coding gene aldo-keto reductase family 1, member C13
Tssr118218 13 4191208 to 4191226 18 + TSS region transcription start site region 118218
Tssr118219 13 4191228 to 4191242 14 + TSS region transcription start site region 118219
D13Mit235 13 4220992 to 4221137 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 235
n-TKctt6 13 4224148 to 4224220 72 - tRNA gene nuclear encoded tRNA lysine 6 (anticodon CTT)
Tssr118220 13 4228682 to 4228727 45 + TSS region transcription start site region 118220
Akr1c19 13 4233503 to 4248361 14858 + protein coding gene aldo-keto reductase family 1, member C19
Tssr118221 13 4233730 to 4233758 28 + TSS region transcription start site region 118221
Tssr118222 13 4233786 to 4233797 11 + TSS region transcription start site region 118222
Marcksl1-ps4 13 4248735 to 4249025 290 + pseudogene MARCKS-like 1, pseudogene 4
Tssr118223 13 4249705 to 4249709 4 + TSS region transcription start site region 118223
Gm40656 13 4255171 to 4258461 3290 + lncRNA gene predicted gene, 40656
Akr1c12 13 4268172 to 4279399 11227 - protein coding gene aldo-keto reductase family 1, member C12
Tssr121299 13 4279336 to 4279353 17 - TSS region transcription start site region 121299
Tssr121300 13 4279357 to 4279373 16 - TSS region transcription start site region 121300
Tssr121301 13 4279390 to 4279409 19 - TSS region transcription start site region 121301
Tssr121302 13 4279420 to 4279450 30 - TSS region transcription start site region 121302
D13Mit236 13 4364026 to 4364122 96 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 236
Hpi1 13 4364026 to 52947604 48583578 QTL hapatic PMN infiltration 1
Gm9973 13 4364550 to 4391259 26709 - lncRNA gene predicted gene 9973
Gm47951 13 4368681 to 4372417 3736 + pseudogene predicted gene, 47951
Tssr121303 13 4391236 to 4391249 13 - TSS region transcription start site region 121303
Akr1c6 13 4434311 to 4457530 23219 + protein coding gene aldo-keto reductase family 1, member C6
Tssr118224 13 4434337 to 4434388 51 + TSS region transcription start site region 118224
Tssr118225 13 4436094 to 4436132 38 + TSS region transcription start site region 118225
Tssr118226 13 4439400 to 4439408 8 + TSS region transcription start site region 118226
Gm48010 13 4465680 to 4466566 886 - lincRNA gene predicted gene, 48010
Akr1c20 13 4486849 to 4523345 36496 - protein coding gene aldo-keto reductase family 1, member C20
Tssr121304 13 4523322 to 4523355 33 - TSS region transcription start site region 121304
Gm40657 13 4555411 to 4565781 10370 - lncRNA gene predicted gene, 40657
Akr1c21 13 4574075 to 4586541 12466 + protein coding gene aldo-keto reductase family 1, member C21
Tssr118227 13 4574075 to 4574088 13 + TSS region transcription start site region 118227
Akr1e1 13 4592490 to 4609164 16674 - protein coding gene aldo-keto reductase family 1, member E1
Tssr121305 13 4609122 to 4609189 67 - TSS region transcription start site region 121305
Tssr118228 13 4614126 to 4614127 1 + TSS region transcription start site region 118228
Rpl29-ps2 13 4614127 to 4614793 666 + pseudogene ribosomal protein L29, pseudogene 2
Tssr118229 13 4725579 to 4725594 15 + TSS region transcription start site region 118229
Gm40658 13 4725779 to 4745537 19758 + lincRNA gene predicted gene, 40658
Tssr121306 13 4756400 to 4756425 25 - TSS region transcription start site region 121306
Gm5444 13 4771651 to 4836485 64834 + lincRNA gene predicted gene 5444
Gm47450 13 4915714 to 4943052 27338 - lincRNA gene predicted gene, 47450
D13Mit158 13 4934018 to 4934159 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 158
Tssr118230 13 5155187 to 5155192 5 + TSS region transcription start site region 118230
Gm24790 13 5189803 to 5189934 131 - snoRNA gene predicted gene, 24790
Gm47451 13 5215791 to 5216178 387 - pseudogene predicted gene, 47451
Gm40659 13 5258802 to 5266034 7232 + lncRNA gene predicted gene, 40659
Gm40660 13 5455229 to 5470234 15005 + lincRNA gene predicted gene, 40660
C86273 13 5539284 to 5551031 11747 unclassified gene expressed sequence C86273
Gm40661 13 5553389 to 5558600 5211 + lncRNA gene predicted gene, 40661
Tssr121307 13 5604177 to 5604189 12 - TSS region transcription start site region 121307
Gm35330 13 5690821 to 5724611 33790 - lincRNA gene predicted gene, 35330
Tssr121308 13 5724439 to 5724458 19 - TSS region transcription start site region 121308
Tssr118231 13 5786067 to 5786068 1 + TSS region transcription start site region 118231
Tssr118232 13 5789609 to 5789612 3 + TSS region transcription start site region 118232
Gm35413 13 5802782 to 5803161 379 - lncRNA gene predicted gene, 35413
Cpgi5252 13 5802900 to 5803061 161 CpG island CpG island 5252
Tssr118233 13 5803829 to 5803847 18 + TSS region transcription start site region 118233
Tssr118234 13 5804544 to 5804550 6 + TSS region transcription start site region 118234
Tssr121309 13 5804636 to 5804648 12 - TSS region transcription start site region 121309
Gm26043 13 5821768 to 5821858 90 - miRNA gene predicted gene, 26043
Tssr121310 13 5822716 to 5822721 5 - TSS region transcription start site region 121310
Gm35464 13 5830121 to 5834477 4356 + lncRNA gene predicted gene, 35464
Tssr118235 13 5841719 to 5841720 1 + TSS region transcription start site region 118235
Tssr118236 13 5845316 to 5845334 18 + TSS region transcription start site region 118236
Tssr121311 13 5845725 to 5845738 13 - TSS region transcription start site region 121311
Tssr121312 13 5845770 to 5845782 12 - TSS region transcription start site region 121312
Tssr121313 13 5845787 to 5845818 31 - TSS region transcription start site region 121313
1700016G22Rik 13 5855509 to 5858092 2583 - lincRNA gene RIKEN cDNA 1700016G22 gene
Tssr121314 13 5857518 to 5857561 43 - TSS region transcription start site region 121314
B230207M22Rik 13 5860325 to 5861196 871 unclassified gene RIKEN cDNA B230207M22 gene
Cpgi5253 13 5860742 to 5861936 1194 CpG island CpG island 5253
Tssr121315 13 5860798 to 5860816 18 - TSS region transcription start site region 121315
Tssr121316 13 5861156 to 5861173 17 - TSS region transcription start site region 121316
Tssr121317 13 5861188 to 5861204 16 - TSS region transcription start site region 121317
Tssr121318 13 5861263 to 5861281 18 - TSS region transcription start site region 121318
Klf6 13 5861489 to 5870393 8904 + protein coding gene Kruppel-like factor 6
Tssr118237 13 5861494 to 5861501 7 + TSS region transcription start site region 118237
Tssr118238 13 5861503 to 5861526 23 + TSS region transcription start site region 118238
Tssr118239 13 5861530 to 5861550 20 + TSS region transcription start site region 118239
Tssr118240 13 5861553 to 5861564 11 + TSS region transcription start site region 118240
Tssr118241 13 5861626 to 5861637 11 + TSS region transcription start site region 118241
Tssr118242 13 5861662 to 5861673 11 + TSS region transcription start site region 118242
Tssr118243 13 5861862 to 5861875 13 + TSS region transcription start site region 118243
Tssr118244 13 5862599 to 5862621 22 + TSS region transcription start site region 118244
Tssr118245 13 5862857 to 5862872 15 + TSS region transcription start site region 118245
Tssr118246 13 5863815 to 5863826 11 + TSS region transcription start site region 118246
Tssr118247 13 5863881 to 5863896 15 + TSS region transcription start site region 118247
Tssr121319 13 5864305 to 5864314 9 - TSS region transcription start site region 121319
Tssr121320 13 5864329 to 5864351 22 - TSS region transcription start site region 121320
Tssr121321 13 5864352 to 5864362 10 - TSS region transcription start site region 121321
Tssr121322 13 5864373 to 5864403 30 - TSS region transcription start site region 121322
Tssr118248 13 5864486 to 5864497 11 + TSS region transcription start site region 118248
Tssr118249 13 5864691 to 5864702 11 + TSS region transcription start site region 118249
Tssr118250 13 5864750 to 5864768 18 + TSS region transcription start site region 118250
Tssr118251 13 5864770 to 5864803 33 + TSS region transcription start site region 118251
Tssr118252 13 5864850 to 5864861 11 + TSS region transcription start site region 118252
Tssr118253 13 5866410 to 5866427 17 + TSS region transcription start site region 118253
Tssr118254 13 5866437 to 5866458 21 + TSS region transcription start site region 118254
Tssr118255 13 5867567 to 5867604 37 + TSS region transcription start site region 118255
Tssr118256 13 5867613 to 5867642 29 + TSS region transcription start site region 118256
Tssr118257 13 5867695 to 5867730 35 + TSS region transcription start site region 118257
Tssr118258 13 5867737 to 5867757 20 + TSS region transcription start site region 118258
Tssr121323 13 5867844 to 5867851 7 - TSS region transcription start site region 121323
Tssr118259 13 5867886 to 5867898 12 + TSS region transcription start site region 118259
Tssr118260 13 5867915 to 5867931 16 + TSS region transcription start site region 118260
Tssr118261 13 5868083 to 5868094 11 + TSS region transcription start site region 118261
Tssr118262 13 5868381 to 5868394 13 + TSS region transcription start site region 118262
Tssr118263 13 5868398 to 5868409 11 + TSS region transcription start site region 118263
Tssr118264 13 5868439 to 5868464 25 + TSS region transcription start site region 118264
Tssr118265 13 5868478 to 5868497 19 + TSS region transcription start site region 118265
Tssr118266 13 5868511 to 5868523 12 + TSS region transcription start site region 118266
Tssr118267 13 5868562 to 5868573 11 + TSS region transcription start site region 118267
Tssr118268 13 5868588 to 5868621 33 + TSS region transcription start site region 118268
Tssr118269 13 5868638 to 5868656 18 + TSS region transcription start site region 118269
Tssr118270 13 5868749 to 5868761 12 + TSS region transcription start site region 118270
Tssr118271 13 5868815 to 5868827 12 + TSS region transcription start site region 118271
Tssr118272 13 5868872 to 5868898 26 + TSS region transcription start site region 118272
Tssr118273 13 5868948 to 5868966 18 + TSS region transcription start site region 118273
Tssr118274 13 5869018 to 5869089 71 + TSS region transcription start site region 118274
Tssr118275 13 5869118 to 5869129 11 + TSS region transcription start site region 118275
Tssr118276 13 5869456 to 5869477 21 + TSS region transcription start site region 118276
Tssr118277 13 5869502 to 5869532 30 + TSS region transcription start site region 118277
Tssr118278 13 5869639 to 5869718 79 + TSS region transcription start site region 118278
Tssr118279 13 5871600 to 5871609 9 + TSS region transcription start site region 118279
Tssr118280 13 5887085 to 5887121 36 + TSS region transcription start site region 118280
Gm47507 13 5887109 to 5928045 40936 + lincRNA gene predicted gene, 47507
Gm46401 13 5915706 to 6013963 98257 + lincRNA gene predicted gene, 46401
Gm26259 13 5997455 to 5997551 96 - miRNA gene predicted gene, 26259
Tssr118281 13 6009616 to 6009621 5 + TSS region transcription start site region 118281
Gm47514 13 6024533 to 6029004 4471 - lincRNA gene predicted gene, 47514
Gm47548 13 6073113 to 6073782 669 - lincRNA gene predicted gene, 47548
Tssr3985 13 6073865 to 6073867 2 + TSS region transcription start site region 3985
D13Mit205 13 6077760 to 6077881 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 205
Tssr121324 13 6109068 to 6109078 10 - TSS region transcription start site region 121324
Tssr121325 13 6109097 to 6109108 11 - TSS region transcription start site region 121325
Tssr3986 13 6123861 to 6123866 5 + TSS region transcription start site region 3986
Gm47549 13 6269108 to 6277026 7918 + lincRNA gene predicted gene, 47549
Gm35615 13 6280548 to 6289420 8872 - lincRNA gene predicted gene, 35615
D13Mit152 13 6302343 to 6302491 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 152
Gm35671 13 6307568 to 6320059 12491 + lncRNA gene predicted gene, 35671
Gm28465 13 6395716 to 6398740 3024 + lincRNA gene predicted gene 28465
D13Mit1 13 6404489 to 6404636 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1
Adip7 13 6404489 to 6404636 147 QTL adiposity 7
Skull19 13 6404489 to 6404636 147 QTL skull morphology 19
Tshp13 13 6404489 to 6404636 147 QTL tooth shape 13
D13Mit1.2 13 6404614 to 6404849 235 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1.2
Tssr121326 13 6404713 to 6404732 19 - TSS region transcription start site region 121326
2900042G08Rik 13 6530595 to 6531244 649 + unclassified gene RIKEN cDNA 2900042G08 gene
D13Mit302 13 6531826 to 6531947 121 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 302
Cpgi5254 13 6547900 to 6548370 470 CpG island CpG island 5254
Pitrm1 13 6548122 to 6580158 32036 + protein coding gene pitrilysin metallepetidase 1
Tssr118282 13 6548135 to 6548146 11 + TSS region transcription start site region 118282
Tssr118283 13 6548154 to 6548174 20 + TSS region transcription start site region 118283
Tssr118284 13 6548176 to 6548190 14 + TSS region transcription start site region 118284
Tssr118285 13 6555394 to 6555434 40 + TSS region transcription start site region 118285
Tssr118286 13 6558468 to 6558474 6 + TSS region transcription start site region 118286
Tssr118287 13 6559387 to 6559427 40 + TSS region transcription start site region 118287
Tssr118288 13 6563469 to 6563478 9 + TSS region transcription start site region 118288
Pfkp 13 6579874 to 6648792 68918 - protein coding gene phosphofructokinase, platelet
Tssr121327 13 6595903 to 6595907 4 - TSS region transcription start site region 121327
Tssr121328 13 6598378 to 6598382 4 - TSS region transcription start site region 121328
Tssr121329 13 6604379 to 6604395 16 - TSS region transcription start site region 121329
Tssr118289 13 6604979 to 6605008 29 + TSS region transcription start site region 118289
Tssr121330 13 6605028 to 6605063 35 - TSS region transcription start site region 121330
Cpgi5255 13 6621885 to 6622159 274 CpG island CpG island 5255
Gm35730 13 6631534 to 6648563 17029 + lncRNA gene predicted gene, 35730