Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:38388522-38929261

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbd2 13 17014923 to 38763430 21748507 QTL peak bone density 2
Bmp6 13 38345716 to 38500314 154598 + protein coding gene bone morphogenetic protein 6
4930579J19Rik 13 38460240 to 38461793 1553 - antisense lncRNA gene RIKEN cDNA 4930579J19 gene
Tssr4047 13 38464635 to 38464647 12 + TSS region transcription start site region 4047
Txndc5 13 38500266 to 38528824 28558 - protein coding gene thioredoxin domain containing 5
Tssr122134 13 38503465 to 38503500 35 - TSS region transcription start site region 122134
Tssr122135 13 38503546 to 38503557 11 - TSS region transcription start site region 122135
Tssr122136 13 38503580 to 38503586 6 - TSS region transcription start site region 122136
Tssr122137 13 38503588 to 38503601 13 - TSS region transcription start site region 122137
Gm47994 13 38514096 to 38514875 779 + pseudogene predicted gene, 47994
Cpgi5468 13 38527683 to 38529081 1398 CpG island CpG island 5468
Tssr122138 13 38528395 to 38528407 12 - TSS region transcription start site region 122138
Tssr122139 13 38528412 to 38528472 60 - TSS region transcription start site region 122139
Gm31834 13 38528593 to 38532920 4327 + antisense lncRNA gene predicted gene, 31834
Gm48056 13 38535274 to 38536680 1406 - lincRNA gene predicted gene, 48056
Cpgi5469 13 38554019 to 38554225 206 CpG island CpG island 5469
Gm40922 13 38554865 to 38563819 8954 + lincRNA gene predicted gene, 40922
Cpgi5470 13 38580252 to 38580503 251 CpG island CpG island 5470
Tssr4048 13 38580883 to 38580884 1 + TSS region transcription start site region 4048
Bloc1s5 13 38602706 to 38635876 33170 - protein coding gene biogenesis of lysosomal organelles complex-1, subunit 5, muted
Cpgi5471 13 38634494 to 38635329 835 CpG island CpG island 5471
Gm47400 13 38634971 to 38637116 2145 + antisense lncRNA gene predicted gene, 47400
Tssr122140 13 38635036 to 38635119 83 - TSS region transcription start site region 122140
Eef1e1 13 38645691 to 38659028 13337 - protein coding gene eukaryotic translation elongation factor 1 epsilon 1
Cpgi5472 13 38658522 to 38659261 739 CpG island CpG island 5472
Tssr122141 13 38658991 to 38659038 47 - TSS region transcription start site region 122141
D13Mit87 13 38671753 to 38671868 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 87
Gm6200 13 38674133 to 38674566 433 - pseudogene predicted gene 6200
D13Mit296 13 38711759 to 38711902 143 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-296
Gm47510 13 38723642 to 38727222 3580 + lincRNA gene predicted gene, 47510
D13Mit88 13 38763262 to 38763430 168 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 88
Gm47511 13 38775824 to 38777191 1367 + lincRNA gene predicted gene, 47511
Gm47509 13 38782161 to 38825755 43594 - lincRNA gene predicted gene, 47509
Gm46392 13 38861730 to 38908237 46507 + lincRNA gene predicted gene, 46392
Gm22035 13 38898360 to 38898587 227 - unclassified non-coding RNA gene predicted gene, 22035
Gm47530 13 38917153 to 38919219 2066 - unclassified gene predicted gene, 47530