Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:38210074-39710896

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbd2 13 17014923 to 38763430 21748507 QTL peak bone density 2
Snrnp48 13 38204938 to 38227665 22727 + protein coding gene small nuclear ribonucleoprotein 48 (U11/U12)
Tssr119359 13 38216474 to 38216490 16 + TSS region transcription start site region 119359
Gm40921 13 38258030 to 38260264 2234 - lncRNA gene predicted gene, 40921
Gm47978 13 38270388 to 38270609 221 - pseudogene predicted gene, 47978
Gm47990 13 38320526 to 38340721 20195 + lincRNA gene predicted gene, 47990
Tssr119360 13 38320618 to 38320628 10 + TSS region transcription start site region 119360
Tssr119361 13 38328766 to 38328780 14 + TSS region transcription start site region 119361
Gm47991 13 38332572 to 38332938 366 + pseudogene predicted gene, 47991
Cpgi5467 13 38344907 to 38347297 2390 CpG island CpG island 5467
Tssr119362 13 38345094 to 38345105 11 + TSS region transcription start site region 119362
Tssr119363 13 38345108 to 38345140 32 + TSS region transcription start site region 119363
Tssr119364 13 38345150 to 38345159 9 + TSS region transcription start site region 119364
Bmp6 13 38345716 to 38500314 154598 + protein coding gene bone morphogenetic protein 6
Tssr119365 13 38350209 to 38350212 3 + TSS region transcription start site region 119365
4930579J19Rik 13 38460240 to 38461793 1553 - antisense lncRNA gene RIKEN cDNA 4930579J19 gene
Tssr4047 13 38464635 to 38464647 12 + TSS region transcription start site region 4047
Txndc5 13 38500266 to 38528824 28558 - protein coding gene thioredoxin domain containing 5
Tssr122134 13 38503465 to 38503500 35 - TSS region transcription start site region 122134
Tssr122135 13 38503546 to 38503557 11 - TSS region transcription start site region 122135
Tssr122136 13 38503580 to 38503586 6 - TSS region transcription start site region 122136
Tssr122137 13 38503588 to 38503601 13 - TSS region transcription start site region 122137
Gm47994 13 38514096 to 38514875 779 + pseudogene predicted gene, 47994
Cpgi5468 13 38527683 to 38529081 1398 CpG island CpG island 5468
Tssr122138 13 38528395 to 38528407 12 - TSS region transcription start site region 122138
Tssr122139 13 38528412 to 38528472 60 - TSS region transcription start site region 122139
Gm31834 13 38528593 to 38532920 4327 + antisense lncRNA gene predicted gene, 31834
Gm48056 13 38535274 to 38536680 1406 - lincRNA gene predicted gene, 48056
Cpgi5469 13 38554019 to 38554225 206 CpG island CpG island 5469
Gm40922 13 38554865 to 38563819 8954 + lincRNA gene predicted gene, 40922
Cpgi5470 13 38580252 to 38580503 251 CpG island CpG island 5470
Tssr4048 13 38580883 to 38580884 1 + TSS region transcription start site region 4048
Bloc1s5 13 38602706 to 38635876 33170 - protein coding gene biogenesis of lysosomal organelles complex-1, subunit 5, muted
Cpgi5471 13 38634494 to 38635329 835 CpG island CpG island 5471
Gm47400 13 38634971 to 38637116 2145 + antisense lncRNA gene predicted gene, 47400
Tssr122140 13 38635036 to 38635119 83 - TSS region transcription start site region 122140
Eef1e1 13 38645691 to 38659028 13337 - protein coding gene eukaryotic translation elongation factor 1 epsilon 1
Cpgi5472 13 38658522 to 38659261 739 CpG island CpG island 5472
Tssr122141 13 38658991 to 38659038 47 - TSS region transcription start site region 122141
D13Mit87 13 38671753 to 38671868 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 87
Gm6200 13 38674133 to 38674566 433 - pseudogene predicted gene 6200
D13Mit296 13 38711759 to 38711902 143 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-296
Gm47510 13 38723642 to 38727222 3580 + lincRNA gene predicted gene, 47510
D13Mit88 13 38763262 to 38763430 168 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 88
Gm47511 13 38775824 to 38777191 1367 + lincRNA gene predicted gene, 47511
Gm47509 13 38782161 to 38825755 43594 - lincRNA gene predicted gene, 47509
Gm46392 13 38861730 to 38908237 46507 + lincRNA gene predicted gene, 46392
Gm22035 13 38898360 to 38898587 227 - unclassified non-coding RNA gene predicted gene, 22035
Gm47530 13 38917153 to 38919219 2066 - unclassified gene predicted gene, 47530
Slc35b3 13 38932140 to 38960875 28735 - protein coding gene solute carrier family 35, member B3
Gm26514 13 38945543 to 38951313 5770 - lincRNA gene predicted gene, 26514
Cpgi5473 13 38960074 to 38960896 822 CpG island CpG island 5473
Tssr122142 13 38960457 to 38960466 9 - TSS region transcription start site region 122142
Tssr122143 13 38960478 to 38960496 18 - TSS region transcription start site region 122143
Tssr122144 13 38960498 to 38960539 41 - TSS region transcription start site region 122144
Tssr122145 13 38960542 to 38960554 12 - TSS region transcription start site region 122145
5033403F01Rik 13 38960619 to 38966297 5678 + antisense lncRNA gene RIKEN cDNA 5033403F01 gene
Tssr122146 13 38960846 to 38960883 37 - TSS region transcription start site region 122146
Tssr122147 13 38967115 to 38967150 35 - TSS region transcription start site region 122147
D13Dcr8 13 38968409 to 38968505 96 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 8
D13Mit137 13 39265532 to 39265662 130 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 137
Gm47348 13 39440565 to 39449671 9106 + lincRNA gene predicted gene, 47348
Gm3509 13 39463227 to 39467017 3790 - lincRNA gene predicted gene 3509
Gm47349 13 39467347 to 39470134 2787 + lincRNA gene predicted gene, 47349
Gm47351 13 39530598 to 39533103 2505 - lincRNA gene predicted gene, 47351
Gm47352 13 39571583 to 39699499 127916 + lincRNA gene predicted gene, 47352
Gm32243 13 39617668 to 39647247 29579 - lincRNA gene predicted gene, 32243