Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:38195074-39725896

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbd2 13 17014923 to 38763430 21748507 QTL peak bone density 2
Dsp 13 38151294 to 38198577 47283 + protein coding gene desmoplakin
Cpgi5464 13 38194971 to 38195733 762 CpG island CpG island 5464
Cpgi5465 13 38197541 to 38197871 330 CpG island CpG island 5465
Cpgi5466 13 38204635 to 38205450 815 CpG island CpG island 5466
Tssr119358 13 38204928 to 38204962 34 + TSS region transcription start site region 119358
Snrnp48 13 38204938 to 38227665 22727 + protein coding gene small nuclear ribonucleoprotein 48 (U11/U12)
Tssr119359 13 38216474 to 38216490 16 + TSS region transcription start site region 119359
Gm40921 13 38258030 to 38260264 2234 - lncRNA gene predicted gene, 40921
Gm47978 13 38270388 to 38270609 221 - pseudogene predicted gene, 47978
Gm47990 13 38320526 to 38340721 20195 + lincRNA gene predicted gene, 47990
Tssr119360 13 38320618 to 38320628 10 + TSS region transcription start site region 119360
Tssr119361 13 38328766 to 38328780 14 + TSS region transcription start site region 119361
Gm47991 13 38332572 to 38332938 366 + pseudogene predicted gene, 47991
Cpgi5467 13 38344907 to 38347297 2390 CpG island CpG island 5467
Tssr119362 13 38345094 to 38345105 11 + TSS region transcription start site region 119362
Tssr119363 13 38345108 to 38345140 32 + TSS region transcription start site region 119363
Tssr119364 13 38345150 to 38345159 9 + TSS region transcription start site region 119364
Bmp6 13 38345716 to 38500314 154598 + protein coding gene bone morphogenetic protein 6
Tssr119365 13 38350209 to 38350212 3 + TSS region transcription start site region 119365
4930579J19Rik 13 38460240 to 38461793 1553 - antisense lncRNA gene RIKEN cDNA 4930579J19 gene
Tssr4047 13 38464635 to 38464647 12 + TSS region transcription start site region 4047
Txndc5 13 38500266 to 38528824 28558 - protein coding gene thioredoxin domain containing 5
Tssr122134 13 38503465 to 38503500 35 - TSS region transcription start site region 122134
Tssr122135 13 38503546 to 38503557 11 - TSS region transcription start site region 122135
Tssr122136 13 38503580 to 38503586 6 - TSS region transcription start site region 122136
Tssr122137 13 38503588 to 38503601 13 - TSS region transcription start site region 122137
Gm47994 13 38514096 to 38514875 779 + pseudogene predicted gene, 47994
Cpgi5468 13 38527683 to 38529081 1398 CpG island CpG island 5468
Tssr122138 13 38528395 to 38528407 12 - TSS region transcription start site region 122138
Tssr122139 13 38528412 to 38528472 60 - TSS region transcription start site region 122139
Gm31834 13 38528593 to 38532920 4327 + antisense lncRNA gene predicted gene, 31834
Gm48056 13 38535274 to 38536680 1406 - lincRNA gene predicted gene, 48056
Cpgi5469 13 38554019 to 38554225 206 CpG island CpG island 5469
Gm40922 13 38554865 to 38563819 8954 + lincRNA gene predicted gene, 40922
Cpgi5470 13 38580252 to 38580503 251 CpG island CpG island 5470
Tssr4048 13 38580883 to 38580884 1 + TSS region transcription start site region 4048
Bloc1s5 13 38602706 to 38635876 33170 - protein coding gene biogenesis of lysosomal organelles complex-1, subunit 5, muted
Cpgi5471 13 38634494 to 38635329 835 CpG island CpG island 5471
Gm47400 13 38634971 to 38637116 2145 + antisense lncRNA gene predicted gene, 47400
Tssr122140 13 38635036 to 38635119 83 - TSS region transcription start site region 122140
Eef1e1 13 38645691 to 38659028 13337 - protein coding gene eukaryotic translation elongation factor 1 epsilon 1
Cpgi5472 13 38658522 to 38659261 739 CpG island CpG island 5472
Tssr122141 13 38658991 to 38659038 47 - TSS region transcription start site region 122141
D13Mit87 13 38671753 to 38671868 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 87
Gm6200 13 38674133 to 38674566 433 - pseudogene predicted gene 6200
D13Mit296 13 38711759 to 38711902 143 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-296
Gm47510 13 38723642 to 38727222 3580 + lincRNA gene predicted gene, 47510
D13Mit88 13 38763262 to 38763430 168 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 88
Gm47511 13 38775824 to 38777191 1367 + lincRNA gene predicted gene, 47511
Gm47509 13 38782161 to 38825755 43594 - lincRNA gene predicted gene, 47509
Gm46392 13 38861730 to 38908237 46507 + lincRNA gene predicted gene, 46392
Gm22035 13 38898360 to 38898587 227 - unclassified non-coding RNA gene predicted gene, 22035
Gm47530 13 38917153 to 38919219 2066 - unclassified gene predicted gene, 47530
Slc35b3 13 38932140 to 38960875 28735 - protein coding gene solute carrier family 35, member B3
Gm26514 13 38945543 to 38951313 5770 - lincRNA gene predicted gene, 26514
Cpgi5473 13 38960074 to 38960896 822 CpG island CpG island 5473
Tssr122142 13 38960457 to 38960466 9 - TSS region transcription start site region 122142
Tssr122143 13 38960478 to 38960496 18 - TSS region transcription start site region 122143
Tssr122144 13 38960498 to 38960539 41 - TSS region transcription start site region 122144
Tssr122145 13 38960542 to 38960554 12 - TSS region transcription start site region 122145
5033403F01Rik 13 38960619 to 38966297 5678 + antisense lncRNA gene RIKEN cDNA 5033403F01 gene
Tssr122146 13 38960846 to 38960883 37 - TSS region transcription start site region 122146
Tssr122147 13 38967115 to 38967150 35 - TSS region transcription start site region 122147
D13Dcr8 13 38968409 to 38968505 96 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 8
D13Mit137 13 39265532 to 39265662 130 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 137
Gm47348 13 39440565 to 39449671 9106 + lincRNA gene predicted gene, 47348
Gm3509 13 39463227 to 39467017 3790 - lincRNA gene predicted gene 3509
Gm47349 13 39467347 to 39470134 2787 + lincRNA gene predicted gene, 47349
Gm47351 13 39530598 to 39533103 2505 - lincRNA gene predicted gene, 47351
Gm47352 13 39571583 to 39699499 127916 + lincRNA gene predicted gene, 47352
Gm32243 13 39617668 to 39647247 29579 - lincRNA gene predicted gene, 32243