Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:38175209-38525212

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dsp 13 38151294 to 38198577 47283 + protein coding gene desmoplakin
Tssr122132 13 38179080 to 38179093 13 - TSS region transcription start site region 122132
Tssr119355 13 38181172 to 38181185 13 + TSS region transcription start site region 119355
Tssr122133 13 38184012 to 38184067 55 - TSS region transcription start site region 122133
Tssr119356 13 38190432 to 38190443 11 + TSS region transcription start site region 119356
Tssr4046 13 38191790 to 38191806 16 - TSS region transcription start site region 4046
Tssr119357 13 38192547 to 38192560 13 + TSS region transcription start site region 119357
Cpgi5464 13 38194971 to 38195733 762 CpG island CpG island 5464
Cpgi5465 13 38197541 to 38197871 330 CpG island CpG island 5465
Cpgi5466 13 38204635 to 38205450 815 CpG island CpG island 5466
Tssr119358 13 38204928 to 38204962 34 + TSS region transcription start site region 119358
Snrnp48 13 38204938 to 38227665 22727 + protein coding gene small nuclear ribonucleoprotein 48 (U11/U12)
Tssr119359 13 38216474 to 38216490 16 + TSS region transcription start site region 119359
Gm40921 13 38258030 to 38260264 2234 - lncRNA gene predicted gene, 40921
Gm47978 13 38270388 to 38270609 221 - pseudogene predicted gene, 47978
Gm47990 13 38320526 to 38340721 20195 + lincRNA gene predicted gene, 47990
Tssr119360 13 38320618 to 38320628 10 + TSS region transcription start site region 119360
Tssr119361 13 38328766 to 38328780 14 + TSS region transcription start site region 119361
Gm47991 13 38332572 to 38332938 366 + pseudogene predicted gene, 47991
Cpgi5467 13 38344907 to 38347297 2390 CpG island CpG island 5467
Tssr119362 13 38345094 to 38345105 11 + TSS region transcription start site region 119362
Tssr119363 13 38345108 to 38345140 32 + TSS region transcription start site region 119363
Tssr119364 13 38345150 to 38345159 9 + TSS region transcription start site region 119364
Bmp6 13 38345716 to 38500314 154598 + protein coding gene bone morphogenetic protein 6
Tssr119365 13 38350209 to 38350212 3 + TSS region transcription start site region 119365
4930579J19Rik 13 38460240 to 38461793 1553 - antisense lncRNA gene RIKEN cDNA 4930579J19 gene
Tssr4047 13 38464635 to 38464647 12 + TSS region transcription start site region 4047
Txndc5 13 38500266 to 38528824 28558 - protein coding gene thioredoxin domain containing 5
Tssr122134 13 38503465 to 38503500 35 - TSS region transcription start site region 122134
Tssr122135 13 38503546 to 38503557 11 - TSS region transcription start site region 122135
Tssr122136 13 38503580 to 38503586 6 - TSS region transcription start site region 122136
Tssr122137 13 38503588 to 38503601 13 - TSS region transcription start site region 122137
Gm47994 13 38514096 to 38514875 779 + pseudogene predicted gene, 47994