Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:38037668-41227247

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240 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbd2 13 17014923 to 38763430 21748507 QTL peak bone density 2
Mcsq4 13 18322000 to 39773000 21451000 QTL methacholine sensitivity QTL 4, final
Riok1 13 38036995 to 38061433 24438 + protein coding gene RIO kinase 1
Tssr122127 13 38037919 to 38037932 13 - TSS region transcription start site region 122127
Tssr122128 13 38037941 to 38037952 11 - TSS region transcription start site region 122128
Tssr122129 13 38037971 to 38037984 13 - TSS region transcription start site region 122129
Gm40920 13 38077059 to 38080465 3406 - lncRNA gene predicted gene, 40920
Gm27387 13 38086202 to 38086317 115 + miRNA gene predicted gene, 27387
Tssr4045 13 38108824 to 38108826 2 + TSS region transcription start site region 4045
Tssr122130 13 38109136 to 38109139 3 - TSS region transcription start site region 122130
Tssr119343 13 38149447 to 38149452 5 + TSS region transcription start site region 119343
Tssr119344 13 38149475 to 38149481 6 + TSS region transcription start site region 119344
Tssr119345 13 38149486 to 38149492 6 + TSS region transcription start site region 119345
Tssr119346 13 38149499 to 38149513 14 + TSS region transcription start site region 119346
Gm10129 13 38150477 to 38151792 1315 - protein coding gene predicted gene 10129
Cpgi5462 13 38151032 to 38153043 2011 CpG island CpG island 5462
Tssr119347 13 38151253 to 38151278 25 + TSS region transcription start site region 119347
Tssr119348 13 38151283 to 38151307 24 + TSS region transcription start site region 119348
Dsp 13 38151294 to 38198577 47283 + protein coding gene desmoplakin
Tssr119349 13 38151324 to 38151339 15 + TSS region transcription start site region 119349
Tssr119350 13 38151343 to 38151354 11 + TSS region transcription start site region 119350
Tssr119351 13 38151371 to 38151393 22 + TSS region transcription start site region 119351
Tssr119352 13 38151411 to 38151422 11 + TSS region transcription start site region 119352
Tssr119353 13 38151433 to 38151444 11 + TSS region transcription start site region 119353
Tssr119354 13 38151721 to 38151754 33 + TSS region transcription start site region 119354
Cpgi5463 13 38164843 to 38165011 168 CpG island CpG island 5463
Tssr122131 13 38173844 to 38173874 30 - TSS region transcription start site region 122131
Tssr122132 13 38179080 to 38179093 13 - TSS region transcription start site region 122132
Tssr119355 13 38181172 to 38181185 13 + TSS region transcription start site region 119355
Tssr122133 13 38184012 to 38184067 55 - TSS region transcription start site region 122133
Tssr119356 13 38190432 to 38190443 11 + TSS region transcription start site region 119356
Tssr4046 13 38191790 to 38191806 16 - TSS region transcription start site region 4046
Tssr119357 13 38192547 to 38192560 13 + TSS region transcription start site region 119357
Cpgi5464 13 38194971 to 38195733 762 CpG island CpG island 5464
Cpgi5465 13 38197541 to 38197871 330 CpG island CpG island 5465
Cpgi5466 13 38204635 to 38205450 815 CpG island CpG island 5466
Tssr119358 13 38204928 to 38204962 34 + TSS region transcription start site region 119358
Snrnp48 13 38204938 to 38227665 22727 + protein coding gene small nuclear ribonucleoprotein 48 (U11/U12)
Tssr119359 13 38216474 to 38216490 16 + TSS region transcription start site region 119359
Gm40921 13 38258030 to 38260264 2234 - lncRNA gene predicted gene, 40921
Gm47978 13 38270388 to 38270609 221 - pseudogene predicted gene, 47978
Gm47990 13 38320526 to 38340721 20195 + lincRNA gene predicted gene, 47990
Tssr119360 13 38320618 to 38320628 10 + TSS region transcription start site region 119360
Tssr119361 13 38328766 to 38328780 14 + TSS region transcription start site region 119361
Gm47991 13 38332572 to 38332938 366 + pseudogene predicted gene, 47991
Cpgi5467 13 38344907 to 38347297 2390 CpG island CpG island 5467
Tssr119362 13 38345094 to 38345105 11 + TSS region transcription start site region 119362
Tssr119363 13 38345108 to 38345140 32 + TSS region transcription start site region 119363
Tssr119364 13 38345150 to 38345159 9 + TSS region transcription start site region 119364
Bmp6 13 38345716 to 38500314 154598 + protein coding gene bone morphogenetic protein 6
Tssr119365 13 38350209 to 38350212 3 + TSS region transcription start site region 119365
4930579J19Rik 13 38460240 to 38461793 1553 - antisense lncRNA gene RIKEN cDNA 4930579J19 gene
Tssr4047 13 38464635 to 38464647 12 + TSS region transcription start site region 4047
Txndc5 13 38500266 to 38528824 28558 - protein coding gene thioredoxin domain containing 5
Tssr122134 13 38503465 to 38503500 35 - TSS region transcription start site region 122134
Tssr122135 13 38503546 to 38503557 11 - TSS region transcription start site region 122135
Tssr122136 13 38503580 to 38503586 6 - TSS region transcription start site region 122136
Tssr122137 13 38503588 to 38503601 13 - TSS region transcription start site region 122137
Gm47994 13 38514096 to 38514875 779 + pseudogene predicted gene, 47994
Cpgi5468 13 38527683 to 38529081 1398 CpG island CpG island 5468
Tssr122138 13 38528395 to 38528407 12 - TSS region transcription start site region 122138
Tssr122139 13 38528412 to 38528472 60 - TSS region transcription start site region 122139
Gm31834 13 38528593 to 38532920 4327 + antisense lncRNA gene predicted gene, 31834
Gm48056 13 38535274 to 38536680 1406 - lincRNA gene predicted gene, 48056
Cpgi5469 13 38554019 to 38554225 206 CpG island CpG island 5469
Gm40922 13 38554865 to 38563819 8954 + lincRNA gene predicted gene, 40922
Cpgi5470 13 38580252 to 38580503 251 CpG island CpG island 5470
Tssr4048 13 38580883 to 38580884 1 + TSS region transcription start site region 4048
Bloc1s5 13 38602706 to 38635876 33170 - protein coding gene biogenesis of lysosomal organelles complex-1, subunit 5, muted
Cpgi5471 13 38634494 to 38635329 835 CpG island CpG island 5471
Gm47400 13 38634971 to 38637116 2145 + antisense lncRNA gene predicted gene, 47400
Tssr122140 13 38635036 to 38635119 83 - TSS region transcription start site region 122140
Eef1e1 13 38645691 to 38659028 13337 - protein coding gene eukaryotic translation elongation factor 1 epsilon 1
Cpgi5472 13 38658522 to 38659261 739 CpG island CpG island 5472
Tssr122141 13 38658991 to 38659038 47 - TSS region transcription start site region 122141
D13Mit87 13 38671753 to 38671868 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 87
Gm6200 13 38674133 to 38674566 433 - pseudogene predicted gene 6200
D13Mit296 13 38711759 to 38711902 143 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-296
Gm47510 13 38723642 to 38727222 3580 + lincRNA gene predicted gene, 47510
D13Mit88 13 38763262 to 38763430 168 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 88
Gm47511 13 38775824 to 38777191 1367 + lincRNA gene predicted gene, 47511
Gm47509 13 38782161 to 38825755 43594 - lincRNA gene predicted gene, 47509
Gm46392 13 38861730 to 38908237 46507 + lincRNA gene predicted gene, 46392
Gm22035 13 38898360 to 38898587 227 - unclassified non-coding RNA gene predicted gene, 22035
Gm47530 13 38917153 to 38919219 2066 - unclassified gene predicted gene, 47530
Slc35b3 13 38932140 to 38960875 28735 - protein coding gene solute carrier family 35, member B3
Gm26514 13 38945543 to 38951313 5770 - lincRNA gene predicted gene, 26514
Cpgi5473 13 38960074 to 38960896 822 CpG island CpG island 5473
Tssr122142 13 38960457 to 38960466 9 - TSS region transcription start site region 122142
Tssr122143 13 38960478 to 38960496 18 - TSS region transcription start site region 122143
Tssr122144 13 38960498 to 38960539 41 - TSS region transcription start site region 122144
Tssr122145 13 38960542 to 38960554 12 - TSS region transcription start site region 122145
5033403F01Rik 13 38960619 to 38966297 5678 + antisense lncRNA gene RIKEN cDNA 5033403F01 gene
Tssr122146 13 38960846 to 38960883 37 - TSS region transcription start site region 122146
Tssr122147 13 38967115 to 38967150 35 - TSS region transcription start site region 122147
D13Dcr8 13 38968409 to 38968505 96 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 8
D13Mit137 13 39265532 to 39265662 130 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 137
Gm47348 13 39440565 to 39449671 9106 + lincRNA gene predicted gene, 47348
Gm3509 13 39463227 to 39467017 3790 - lincRNA gene predicted gene 3509
Gm47349 13 39467347 to 39470134 2787 + lincRNA gene predicted gene, 47349
Gm47351 13 39530598 to 39533103 2505 - lincRNA gene predicted gene, 47351
Gm47352 13 39571583 to 39699499 127916 + lincRNA gene predicted gene, 47352
Gm32243 13 39617668 to 39647247 29579 - lincRNA gene predicted gene, 32243
Gm5195 13 39757308 to 39757967 659 + pseudogene predicted gene 5195
Gm40923 13 39771790 to 39791384 19594 - lincRNA gene predicted gene, 40923
Gm46393 13 39791448 to 39794937 3489 + lncRNA gene predicted gene, 46393
Gm47361 13 39796321 to 39796944 623 + pseudogene predicted gene, 47361
Gm46394 13 39803393 to 39806238 2845 - lncRNA gene predicted gene, 46394
A230103O09Rik 13 39823418 to 39831052 7634 + unclassified non-coding RNA gene RIKEN cDNA A230103O09 gene
Tssr119366 13 39824175 to 39824213 38 + TSS region transcription start site region 119366
Cpgi5474 13 39824216 to 39824416 200 CpG island CpG island 5474
Gm23972 13 39858863 to 39859027 164 - snRNA gene predicted gene, 23972
Gm47316 13 39877035 to 39884381 7346 - lincRNA gene predicted gene, 47316
Tssr122148 13 39899287 to 39899299 12 - TSS region transcription start site region 122148
Gm40924 13 39912866 to 39923211 10345 - lncRNA gene predicted gene, 40924
Ofcc1 13 40001882 to 40288011 286129 - protein coding gene orofacial cleft 1 candidate 1
Tssr119367 13 40321433 to 40321442 9 + TSS region transcription start site region 119367
Cpgi5475 13 40360085 to 40360247 162 CpG island CpG island 5475
Cpgi5476 13 40461871 to 40462028 157 CpG island CpG island 5476
Gm8352 13 40496254 to 40497473 1219 + pseudogene predicted gene 8352
Gm47038 13 40533570 to 40533947 377 + pseudogene predicted gene, 47038
Tssr119368 13 40545563 to 40545564 1 + TSS region transcription start site region 119368
Tssr119369 13 40553321 to 40553326 5 + TSS region transcription start site region 119369
Gm47039 13 40559320 to 40606479 47159 - lincRNA gene predicted gene, 47039
Gm47041 13 40642607 to 40644649 2042 - unclassified gene predicted gene, 47041
Tssr122149 13 40683885 to 40683896 11 - TSS region transcription start site region 122149
Cpgi5477 13 40702730 to 40703078 348 CpG island CpG island 5477
Cpgi5478 13 40703947 to 40704533 586 CpG island CpG island 5478
Gm9979 13 40704005 to 40707949 3944 + lincRNA gene predicted gene 9979
Cpgi5479 13 40704874 to 40705473 599 CpG island CpG island 5479
Cpgi5480 13 40708911 to 40709299 388 CpG island CpG island 5480
Tfap2a 13 40715302 to 40738237 22935 - protein coding gene transcription factor AP-2, alpha
Cpgi5481 13 40716816 to 40717259 443 CpG island CpG island 5481
Tssr119370 13 40717137 to 40717147 10 + TSS region transcription start site region 119370
Cpgi5482 13 40722739 to 40723547 808 CpG island CpG island 5482
Gm47061 13 40723110 to 40725449 2339 + antisense lncRNA gene predicted gene, 47061
Tssr122150 13 40725186 to 40725215 29 - TSS region transcription start site region 122150
Tssr122151 13 40725826 to 40725831 5 - TSS region transcription start site region 122151
Tssr122152 13 40726912 to 40726913 1 - TSS region transcription start site region 122152
Gm26688 13 40727808 to 40735162 7354 + antisense lncRNA gene predicted gene, 26688
Cpgi5483 13 40728164 to 40728890 726 CpG island CpG island 5483
Tssr122153 13 40728941 to 40728945 4 - TSS region transcription start site region 122153
Cpgi5484 13 40729635 to 40731955 2320 CpG island CpG island 5484
Tssr122154 13 40730096 to 40730100 4 - TSS region transcription start site region 122154
Tssr122155 13 40730416 to 40730429 13 - TSS region transcription start site region 122155
Tssr122156 13 40730731 to 40730739 8 - TSS region transcription start site region 122156
Tssr122157 13 40730750 to 40730762 12 - TSS region transcription start site region 122157
Tssr122158 13 40730781 to 40730798 17 - TSS region transcription start site region 122158
Tssr122159 13 40730820 to 40730825 5 - TSS region transcription start site region 122159
Tssr122160 13 40730867 to 40730879 12 - TSS region transcription start site region 122160
Tssr122161 13 40730995 to 40731029 34 - TSS region transcription start site region 122161
Tssr122162 13 40731044 to 40731055 11 - TSS region transcription start site region 122162
Tssr122163 13 40731592 to 40731632 40 - TSS region transcription start site region 122163
Tssr122164 13 40731661 to 40731670 9 - TSS region transcription start site region 122164
Cpgi5485 13 40732766 to 40733159 393 CpG island CpG island 5485
Cpgi5486 13 40733451 to 40734871 1420 CpG island CpG island 5486
Tssr122165 13 40733768 to 40733836 68 - TSS region transcription start site region 122165
Tssr122166 13 40733968 to 40733991 23 - TSS region transcription start site region 122166
Tssr119371 13 40734131 to 40734137 6 + TSS region transcription start site region 119371
Cpgi5487 13 40735921 to 40736152 231 CpG island CpG island 5487
Gm47067 13 40737568 to 40739021 1453 + antisense lncRNA gene predicted gene, 47067
Cpgi5488 13 40737697 to 40738205 508 CpG island CpG island 5488
Tssr122167 13 40738236 to 40738246 10 - TSS region transcription start site region 122167
Tssr122168 13 40738373 to 40738386 13 - TSS region transcription start site region 122168
Cpgi5489 13 40738520 to 40738791 271 CpG island CpG island 5489
Cpgi5490 13 40742025 to 40742360 335 CpG island CpG island 5490
Cpgi5491 13 40744621 to 40745132 511 CpG island CpG island 5491
Gm48107 13 40754060 to 40754996 936 - lincRNA gene predicted gene, 48107
Gm6245 13 40778040 to 40778804 764 + pseudogene predicted gene 6245
Gm7201 13 40830797 to 40838656 7859 - pseudogene predicted gene 7201
Gm35160 13 40846739 to 40847554 815 + protein coding gene predicted gene, 35160
Gcnt2 13 40859768 to 40960892 101124 + protein coding gene glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
Tssr119372 13 40859808 to 40859822 14 + TSS region transcription start site region 119372
Tssr119373 13 40859927 to 40859989 62 + TSS region transcription start site region 119373
Tssr119374 13 40860124 to 40860139 15 + TSS region transcription start site region 119374
Tssr119375 13 40860156 to 40860187 31 + TSS region transcription start site region 119375
Tssr119376 13 40860202 to 40860235 33 + TSS region transcription start site region 119376
Mir5124a 13 40865791 to 40865862 71 + miRNA gene microRNA 5124a
Gm48192 13 40873498 to 40874189 691 - unclassified gene predicted gene, 48192
Tssr119377 13 40886797 to 40886818 21 + TSS region transcription start site region 119377
Tssr119378 13 40886937 to 40886944 7 + TSS region transcription start site region 119378
Tssr119379 13 40887093 to 40887116 23 + TSS region transcription start site region 119379
Tssr119380 13 40887181 to 40887199 18 + TSS region transcription start site region 119380
Tssr119381 13 40887235 to 40887252 17 + TSS region transcription start site region 119381
Tssr122169 13 40892673 to 40892686 13 - TSS region transcription start site region 122169
Gm31683 13 40907332 to 40917895 10563 - antisense lncRNA gene predicted gene, 31683
Gm48188 13 40911504 to 40912207 703 - pseudogene predicted gene, 48188
D13Mit61 13 40913258 to 40913421 163 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 61
Cpgi5492 13 40917432 to 40918098 666 CpG island CpG island 5492
Tssr119382 13 40917626 to 40917657 31 + TSS region transcription start site region 119382
Tssr119383 13 40918147 to 40918157 10 + TSS region transcription start site region 119383
Tssr119384 13 40918526 to 40918538 12 + TSS region transcription start site region 119384
Tssr119385 13 40918681 to 40918689 8 + TSS region transcription start site region 119385
A730081D07Rik 13 40927834 to 40960010 32176 - antisense lncRNA gene RIKEN cDNA A730081D07 gene
Tssr119386 13 40944371 to 40944384 13 + TSS region transcription start site region 119386
5530402G07Rik 13 40948889 to 40949631 742 - unclassified gene RIKEN cDNA 5530402G07 gene
Tssr122170 13 40968710 to 40968721 11 - TSS region transcription start site region 122170
Tssr119387 13 40971561 to 40971569 8 + TSS region transcription start site region 119387
Tssr122171 13 40984793 to 40984797 4 - TSS region transcription start site region 122171
Cpgi5493 13 41000426 to 41001616 1190 CpG island CpG island 5493