Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:36968546-40038557

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265 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbd2 13 17014923 to 38763430 21748507 QTL peak bone density 2
Mcsq4 13 18322000 to 39773000 21451000 QTL methacholine sensitivity QTL 4, final
F13a1 13 36867178 to 37050244 183066 - protein coding gene coagulation factor XIII, A1 subunit
Gm30489 13 36963239 to 36973329 10090 + antisense lncRNA gene predicted gene, 30489
Tssr122103 13 36971599 to 36971602 3 - TSS region transcription start site region 122103
Cpgi5453 13 36988911 to 36989081 170 CpG island CpG island 5453
Gm30240 13 36989093 to 36997851 8758 + lncRNA gene predicted gene, 30240
Tssr122104 13 37049182 to 37049191 9 - TSS region transcription start site region 122104
Tssr122105 13 37049203 to 37049220 17 - TSS region transcription start site region 122105
Tssr122106 13 37050237 to 37050274 37 - TSS region transcription start site region 122106
Tssr122107 13 37050290 to 37050301 11 - TSS region transcription start site region 122107
Gm30549 13 37070967 to 37072531 1564 + lncRNA gene predicted gene, 30549
Gm18643 13 37092547 to 37095553 3006 - pseudogene predicted gene, 18643
Tssr122108 13 37103969 to 37104001 32 - TSS region transcription start site region 122108
Gm47707 13 37156018 to 37157755 1737 + lincRNA gene predicted gene, 47707
Gm30600 13 37237649 to 37244907 7258 - lincRNA gene predicted gene, 30600
Gm47709 13 37248660 to 37252165 3505 + lincRNA gene predicted gene, 47709
Tssr122109 13 37255399 to 37255404 5 - TSS region transcription start site region 122109
Cpgi5454 13 37311670 to 37311899 229 CpG island CpG island 5454
D13Mit275.2 13 37323414 to 37323552 138 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 275.2
D13Mit275 13 37323521 to 37323627 106 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 275
Gm47711 13 37326466 to 37327047 581 + lincRNA gene predicted gene, 47711
Tssr119273 13 37333699 to 37333710 11 + TSS region transcription start site region 119273
Gm40913 13 37333725 to 37341997 8272 + lncRNA gene predicted gene, 40913
Tssr119274 13 37333757 to 37333773 16 + TSS region transcription start site region 119274
Tssr119275 13 37345288 to 37345303 15 + TSS region transcription start site region 119275
Tssr119276 13 37345338 to 37345365 27 + TSS region transcription start site region 119276
Ly86 13 37345345 to 37419036 73691 + protein coding gene lymphocyte antigen 86
Tssr119277 13 37345384 to 37345407 23 + TSS region transcription start site region 119277
Tssr119278 13 37345415 to 37345432 17 + TSS region transcription start site region 119278
Tssr119279 13 37345457 to 37345480 23 + TSS region transcription start site region 119279
Tssr119280 13 37376618 to 37376641 23 + TSS region transcription start site region 119280
Tssr119281 13 37376924 to 37376945 21 + TSS region transcription start site region 119281
Tssr119282 13 37378534 to 37378545 11 + TSS region transcription start site region 119282
Tssr119283 13 37378576 to 37378588 12 + TSS region transcription start site region 119283
Tssr119284 13 37378695 to 37378712 17 + TSS region transcription start site region 119284
Tssr119285 13 37378795 to 37378828 33 + TSS region transcription start site region 119285
Tssr119286 13 37401002 to 37401005 3 + TSS region transcription start site region 119286
Tssr119287 13 37403977 to 37403987 10 + TSS region transcription start site region 119287
Tssr119288 13 37415492 to 37415521 29 + TSS region transcription start site region 119288
Tssr119289 13 37418535 to 37418548 13 + TSS region transcription start site region 119289
Tssr119290 13 37418662 to 37418685 23 + TSS region transcription start site region 119290
Tssr119291 13 37418763 to 37418793 30 + TSS region transcription start site region 119291
Tssr119292 13 37418842 to 37418860 18 + TSS region transcription start site region 119292
Gm4035 13 37421943 to 37435082 13139 - lincRNA gene predicted gene 4035
Gm47730 13 37439593 to 37440454 861 - lincRNA gene predicted gene, 47730
Tssr122110 13 37440068 to 37440089 21 - TSS region transcription start site region 122110
Gm29459 13 37449400 to 37451157 1757 - lincRNA gene predicted gene 29459
Gm29458 13 37452212 to 37453208 996 - lincRNA gene predicted gene 29458
AU017834 13 37472037 to 37479212 7175 unclassified gene expressed sequence AU017834
Gm47731 13 37472038 to 37479213 7175 + lincRNA gene predicted gene, 47731
Gm40914 13 37477085 to 37487980 10895 - lncRNA gene predicted gene, 40914
Tssr122111 13 37477842 to 37477871 29 - TSS region transcription start site region 122111
Tssr119293 13 37482381 to 37482392 11 + TSS region transcription start site region 119293
Gm47732 13 37482385 to 37483150 765 + lincRNA gene predicted gene, 47732
Tssr119294 13 37483405 to 37483427 22 + TSS region transcription start site region 119294
Gm30863 13 37490045 to 37532958 42913 - lncRNA gene predicted gene, 30863
Gm47734 13 37504206 to 37507752 3546 - lincRNA gene predicted gene, 47734
Gm29590 13 37509492 to 37512421 2929 + lincRNA gene predicted gene 29590
Lncbate6 13 37541357 to 37549725 8368 + lincRNA gene brown adipose tissue enriched long noncoding RNA 6
Tssr119295 13 37543057 to 37543073 16 + TSS region transcription start site region 119295
Tssr119296 13 37543076 to 37543103 27 + TSS region transcription start site region 119296
Gm47751 13 37561945 to 37564972 3027 - lincRNA gene predicted gene, 47751
Heal17 13 37562963 to 37563080 117 QTL wound healing/regeneration 17
D13Mit117 13 37562963 to 37563080 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 117
Tssr119297 13 37578393 to 37578394 1 + TSS region transcription start site region 119297
Tssr119298 13 37581058 to 37581110 52 + TSS region transcription start site region 119298
Gm47754 13 37581077 to 37589313 8236 + lincRNA gene predicted gene, 47754
Tssr119299 13 37581116 to 37581144 28 + TSS region transcription start site region 119299
Tssr119300 13 37581208 to 37581218 10 + TSS region transcription start site region 119300
Gm47753 13 37582271 to 37582564 293 + pseudogene predicted gene, 47753
Tssr119301 13 37598719 to 37598728 9 + TSS region transcription start site region 119301
Tssr119302 13 37598760 to 37598773 13 + TSS region transcription start site region 119302
Gm40915 13 37616964 to 37627603 10639 - lincRNA gene predicted gene, 40915
Gm40916 13 37633785 to 37643342 9557 - lincRNA gene predicted gene, 40916
Gm40917 13 37643905 to 37648099 4194 - lncRNA gene predicted gene, 40917
AI463229 13 37657022 to 37667734 10712 - lincRNA gene expressed sequence AI463229
Cpgi5455 13 37657338 to 37657614 276 CpG island CpG island 5455
D13Mit38 13 37666021 to 37666163 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 38
Gm49350 13 37684925 to 37686425 1500 - lincRNA gene predicted gene, 49350
Gm40918 13 37692089 to 37717648 25559 - lincRNA gene predicted gene, 40918
Gm49351 13 37697306 to 37698158 852 - pseudogene predicted gene, 49351
Tssr119303 13 37700999 to 37701000 1 + TSS region transcription start site region 119303
Gm45936 13 37717382 to 37734742 17360 - lncRNA gene predicted gene, 45936
Tssr122112 13 37729823 to 37729830 7 - TSS region transcription start site region 122112
Tssr122113 13 37743869 to 37743870 1 - TSS region transcription start site region 122113
Gm31600 13 37761545 to 37767935 6390 + lincRNA gene predicted gene, 31600
Tssr122114 13 37769931 to 37769935 4 - TSS region transcription start site region 122114
Cpgi5456 13 37777906 to 37779132 1226 CpG island CpG island 5456
Tssr119304 13 37778384 to 37778403 19 + TSS region transcription start site region 119304
Rreb1 13 37778400 to 37952005 173605 + protein coding gene ras responsive element binding protein 1
Tssr119305 13 37778412 to 37778424 12 + TSS region transcription start site region 119305
Tssr119306 13 37778438 to 37778468 30 + TSS region transcription start site region 119306
Tssr119307 13 37778473 to 37778500 27 + TSS region transcription start site region 119307
Tssr119308 13 37778522 to 37778531 9 + TSS region transcription start site region 119308
Tssr119309 13 37787220 to 37787225 5 + TSS region transcription start site region 119309
Tssr119310 13 37788071 to 37788075 4 + TSS region transcription start site region 119310
Gm46411 13 37793382 to 37799790 6408 - antisense lncRNA gene predicted gene, 46411
Tssr119311 13 37801534 to 37801538 4 + TSS region transcription start site region 119311
Tssr119312 13 37802059 to 37802092 33 + TSS region transcription start site region 119312
Tssr119313 13 37803206 to 37803240 34 + TSS region transcription start site region 119313
Tssr119314 13 37806156 to 37806166 10 + TSS region transcription start site region 119314
Tssr119315 13 37809473 to 37809522 49 + TSS region transcription start site region 119315
Cpgi5457 13 37825123 to 37828042 2919 CpG island CpG island 5457
Tssr119316 13 37825847 to 37825873 26 + TSS region transcription start site region 119316
Tssr119317 13 37825994 to 37826003 9 + TSS region transcription start site region 119317
Tssr119318 13 37826018 to 37826044 26 + TSS region transcription start site region 119318
Tssr119319 13 37826056 to 37826081 25 + TSS region transcription start site region 119319
Tssr119320 13 37826225 to 37826250 25 + TSS region transcription start site region 119320
Tssr119321 13 37826617 to 37826706 89 + TSS region transcription start site region 119321
Tssr119322 13 37826792 to 37826804 12 + TSS region transcription start site region 119322
Tssr119323 13 37826815 to 37826832 17 + TSS region transcription start site region 119323
Tssr119324 13 37826904 to 37826949 45 + TSS region transcription start site region 119324
Tssr122115 13 37827222 to 37827253 31 - TSS region transcription start site region 122115
Tssr119325 13 37833819 to 37833843 24 + TSS region transcription start site region 119325
Tssr119326 13 37837627 to 37837666 39 + TSS region transcription start site region 119326
Tssr119327 13 37841610 to 37841658 48 + TSS region transcription start site region 119327
Tssr119328 13 37845854 to 37845883 29 + TSS region transcription start site region 119328
Tssr119329 13 37846339 to 37846350 11 + TSS region transcription start site region 119329
Tssr119330 13 37848707 to 37848716 9 + TSS region transcription start site region 119330
Tssr119331 13 37853469 to 37853473 4 + TSS region transcription start site region 119331
Tssr119332 13 37856872 to 37856876 4 + TSS region transcription start site region 119332
Cpgi5458 13 37857349 to 37858290 941 CpG island CpG island 5458
Tssr119333 13 37857414 to 37857421 7 + TSS region transcription start site region 119333
Tssr119334 13 37857961 to 37857992 31 + TSS region transcription start site region 119334
Tssr119335 13 37864909 to 37864920 11 + TSS region transcription start site region 119335
Tssr119336 13 37873041 to 37873042 1 + TSS region transcription start site region 119336
Tssr119337 13 37873431 to 37873472 41 + TSS region transcription start site region 119337
Tssr4044 13 37895421 to 37895425 4 + TSS region transcription start site region 4044
Tssr119338 13 37896560 to 37896566 6 + TSS region transcription start site region 119338
D13Ertd150e 13 37922812 to 37923025 213 DNA segment DNA segment, Chr 13, ERATO Doi 150, expressed
Tssr119339 13 37930214 to 37930241 27 + TSS region transcription start site region 119339
Cpgi5459 13 37930756 to 37931277 521 CpG island CpG island 5459
Tssr119340 13 37936993 to 37937001 8 + TSS region transcription start site region 119340
Ssr1 13 37971401 to 37994236 22835 - protein coding gene signal sequence receptor, alpha
Tssr122116 13 37979511 to 37979529 18 - TSS region transcription start site region 122116
Tssr122117 13 37992099 to 37992116 17 - TSS region transcription start site region 122117
Cpgi5460 13 37993449 to 37994428 979 CpG island CpG island 5460
Tssr122118 13 37994052 to 37994060 8 - TSS region transcription start site region 122118
Tssr122119 13 37994075 to 37994091 16 - TSS region transcription start site region 122119
Tssr122120 13 37994111 to 37994184 73 - TSS region transcription start site region 122120
Cage1 13 38006052 to 38037019 30967 - protein coding gene cancer antigen 1
Tssr119341 13 38010802 to 38010842 40 + TSS region transcription start site region 119341
Tssr122121 13 38031900 to 38031935 35 - TSS region transcription start site region 122121
Tssr122122 13 38031944 to 38031951 7 - TSS region transcription start site region 122122
Cpgi5461 13 38036604 to 38037630 1026 CpG island CpG island 5461
Tssr122123 13 38036890 to 38036913 23 - TSS region transcription start site region 122123
Tssr122124 13 38036925 to 38036947 22 - TSS region transcription start site region 122124
Riok1 13 38036995 to 38061433 24438 + protein coding gene RIO kinase 1
Tssr122125 13 38037083 to 38037158 75 - TSS region transcription start site region 122125
Tssr122126 13 38037165 to 38037184 19 - TSS region transcription start site region 122126
Tssr119342 13 38037235 to 38037310 75 + TSS region transcription start site region 119342
Tssr122127 13 38037919 to 38037932 13 - TSS region transcription start site region 122127
Tssr122128 13 38037941 to 38037952 11 - TSS region transcription start site region 122128
Tssr122129 13 38037971 to 38037984 13 - TSS region transcription start site region 122129
Gm40920 13 38077059 to 38080465 3406 - lncRNA gene predicted gene, 40920
Gm27387 13 38086202 to 38086317 115 + miRNA gene predicted gene, 27387
Tssr4045 13 38108824 to 38108826 2 + TSS region transcription start site region 4045
Tssr122130 13 38109136 to 38109139 3 - TSS region transcription start site region 122130
Tssr119343 13 38149447 to 38149452 5 + TSS region transcription start site region 119343
Tssr119344 13 38149475 to 38149481 6 + TSS region transcription start site region 119344
Tssr119345 13 38149486 to 38149492 6 + TSS region transcription start site region 119345
Tssr119346 13 38149499 to 38149513 14 + TSS region transcription start site region 119346
Gm10129 13 38150477 to 38151792 1315 - protein coding gene predicted gene 10129
Cpgi5462 13 38151032 to 38153043 2011 CpG island CpG island 5462
Tssr119347 13 38151253 to 38151278 25 + TSS region transcription start site region 119347
Tssr119348 13 38151283 to 38151307 24 + TSS region transcription start site region 119348
Dsp 13 38151294 to 38198577 47283 + protein coding gene desmoplakin
Tssr119349 13 38151324 to 38151339 15 + TSS region transcription start site region 119349
Tssr119350 13 38151343 to 38151354 11 + TSS region transcription start site region 119350
Tssr119351 13 38151371 to 38151393 22 + TSS region transcription start site region 119351
Tssr119352 13 38151411 to 38151422 11 + TSS region transcription start site region 119352
Tssr119353 13 38151433 to 38151444 11 + TSS region transcription start site region 119353
Tssr119354 13 38151721 to 38151754 33 + TSS region transcription start site region 119354
Cpgi5463 13 38164843 to 38165011 168 CpG island CpG island 5463
Tssr122131 13 38173844 to 38173874 30 - TSS region transcription start site region 122131
Tssr122132 13 38179080 to 38179093 13 - TSS region transcription start site region 122132
Tssr119355 13 38181172 to 38181185 13 + TSS region transcription start site region 119355
Tssr122133 13 38184012 to 38184067 55 - TSS region transcription start site region 122133
Tssr119356 13 38190432 to 38190443 11 + TSS region transcription start site region 119356
Tssr4046 13 38191790 to 38191806 16 - TSS region transcription start site region 4046
Tssr119357 13 38192547 to 38192560 13 + TSS region transcription start site region 119357
Cpgi5464 13 38194971 to 38195733 762 CpG island CpG island 5464
Cpgi5465 13 38197541 to 38197871 330 CpG island CpG island 5465
Cpgi5466 13 38204635 to 38205450 815 CpG island CpG island 5466
Tssr119358 13 38204928 to 38204962 34 + TSS region transcription start site region 119358
Snrnp48 13 38204938 to 38227665 22727 + protein coding gene small nuclear ribonucleoprotein 48 (U11/U12)
Tssr119359 13 38216474 to 38216490 16 + TSS region transcription start site region 119359
Gm40921 13 38258030 to 38260264 2234 - lncRNA gene predicted gene, 40921
Gm47978 13 38270388 to 38270609 221 - pseudogene predicted gene, 47978
Gm47990 13 38320526 to 38340721 20195 + lincRNA gene predicted gene, 47990
Tssr119360 13 38320618 to 38320628 10 + TSS region transcription start site region 119360
Tssr119361 13 38328766 to 38328780 14 + TSS region transcription start site region 119361
Gm47991 13 38332572 to 38332938 366 + pseudogene predicted gene, 47991
Cpgi5467 13 38344907 to 38347297 2390 CpG island CpG island 5467
Tssr119362 13 38345094 to 38345105 11 + TSS region transcription start site region 119362
Tssr119363 13 38345108 to 38345140 32 + TSS region transcription start site region 119363
Tssr119364 13 38345150 to 38345159 9 + TSS region transcription start site region 119364
Bmp6 13 38345716 to 38500314 154598 + protein coding gene bone morphogenetic protein 6
Tssr119365 13 38350209 to 38350212 3 + TSS region transcription start site region 119365