Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:3646166-4750604

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Asb13 13 3634013 to 3651779 17766 + protein coding gene ankyrin repeat and SOCS box-containing 13
Gm23084 13 3648537 to 3648650 113 + rRNA gene predicted gene, 23084
Tssr118207 13 3652777 to 3652783 6 + TSS region transcription start site region 118207
Cpgi5248 13 3653435 to 3653614 179 CpG island CpG island 5248
Gm47695 13 3759825 to 3781203 21378 + lincRNA gene predicted gene, 47695
Gm35190 13 3762282 to 3766722 4440 - lincRNA gene predicted gene, 35190
Tssr121287 13 3767166 to 3767181 15 - TSS region transcription start site region 121287
Calml3 13 3802896 to 3804316 1420 - protein coding gene calmodulin-like 3
Tssr121288 13 3803285 to 3803291 6 - TSS region transcription start site region 121288
Cpgi5249 13 3803789 to 3804030 241 CpG island CpG island 5249
Tssr121289 13 3804214 to 3804239 25 - TSS region transcription start site region 121289
Tssr121290 13 3804307 to 3804337 30 - TSS region transcription start site region 121290
Gm40655 13 3825519 to 3836003 10484 + sense overlapping lncRNA gene predicted gene, 40655
Calm4 13 3837757 to 3838671 914 + protein coding gene calmodulin 4
Calm5 13 3854173 to 3854761 588 + protein coding gene calmodulin 5
Net1 13 3882018 to 3918220 36202 - protein coding gene neuroepithelial cell transforming gene 1
Cpgi5250 13 3893329 to 3893703 374 CpG island CpG island 5250
Tssr121291 13 3893506 to 3893553 47 - TSS region transcription start site region 121291
Tssr121292 13 3893556 to 3893589 33 - TSS region transcription start site region 121292
Tssr121293 13 3894295 to 3894300 5 - TSS region transcription start site region 121293
Gm47813 13 3899209 to 3900248 1039 - unclassified gene predicted gene, 47813
Tssr121294 13 3910492 to 3910496 4 - TSS region transcription start site region 121294
Cpgi5251 13 3917603 to 3918274 671 CpG island CpG island 5251
Tssr121295 13 3918144 to 3918151 7 - TSS region transcription start site region 121295
Tssr121296 13 3918157 to 3918219 62 - TSS region transcription start site region 121296
Tubal3 13 3924635 to 3935277 10642 + protein coding gene tubulin, alpha-like 3
Tssr118208 13 3924671 to 3924684 13 + TSS region transcription start site region 118208
Tssr118209 13 3924686 to 3924713 27 + TSS region transcription start site region 118209
Ucn3 13 3940688 to 3945349 4661 - protein coding gene urocortin 3
Gm22460 13 3957119 to 3957242 123 - miRNA gene predicted gene, 22460
Tssr118210 13 3995361 to 3995365 4 + TSS region transcription start site region 118210
Gm47853 13 4023169 to 4025827 2658 + pseudogene predicted gene, 47853
Gm18857 13 4037952 to 4041308 3356 + pseudogene predicted gene, 18857
Tssr118211 13 4048972 to 4048983 11 + TSS region transcription start site region 118211
Tssr118212 13 4049001 to 4049030 29 + TSS region transcription start site region 118212
Tssr118213 13 4049040 to 4049043 3 + TSS region transcription start site region 118213
Tssr118214 13 4059565 to 4059586 21 + TSS region transcription start site region 118214
Tssr118215 13 4059587 to 4059600 13 + TSS region transcription start site region 118215
Akr1c14 13 4059591 to 4090422 30831 + protein coding gene aldo-keto reductase family 1, member C14
Tssr118216 13 4059671 to 4059672 1 + TSS region transcription start site region 118216
Gm47904 13 4091286 to 4092636 1350 + lincRNA gene predicted gene, 47904
Gm47905 13 4097498 to 4100831 3333 + unclassified gene predicted gene, 47905
Akr1c18 13 4132615 to 4150651 18036 - protein coding gene aldo-keto reductase family 1, member C18
Tssr121297 13 4150633 to 4150653 20 - TSS region transcription start site region 121297
Tssr121298 13 4150659 to 4150673 14 - TSS region transcription start site region 121298
Gm47925 13 4166503 to 4172845 6342 + lincRNA gene predicted gene, 47925
Gm2123 13 4168646 to 4170980 2334 - pseudogene predicted gene 2123
Tssr118217 13 4191163 to 4191200 37 + TSS region transcription start site region 118217
Akr1c13 13 4191166 to 4205604 14438 + protein coding gene aldo-keto reductase family 1, member C13
Tssr118218 13 4191208 to 4191226 18 + TSS region transcription start site region 118218
Tssr118219 13 4191228 to 4191242 14 + TSS region transcription start site region 118219
D13Mit235 13 4220992 to 4221137 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 235
n-TKctt6 13 4224148 to 4224220 72 - tRNA gene nuclear encoded tRNA lysine 6 (anticodon CTT)
Tssr118220 13 4228682 to 4228727 45 + TSS region transcription start site region 118220
Akr1c19 13 4233503 to 4248361 14858 + protein coding gene aldo-keto reductase family 1, member C19
Tssr118221 13 4233730 to 4233758 28 + TSS region transcription start site region 118221
Tssr118222 13 4233786 to 4233797 11 + TSS region transcription start site region 118222
Marcksl1-ps4 13 4248735 to 4249025 290 + pseudogene MARCKS-like 1, pseudogene 4
Tssr118223 13 4249705 to 4249709 4 + TSS region transcription start site region 118223
Gm40656 13 4255171 to 4258461 3290 + lncRNA gene predicted gene, 40656
Akr1c12 13 4268172 to 4279399 11227 - protein coding gene aldo-keto reductase family 1, member C12
Tssr121299 13 4279336 to 4279353 17 - TSS region transcription start site region 121299
Tssr121300 13 4279357 to 4279373 16 - TSS region transcription start site region 121300
Tssr121301 13 4279390 to 4279409 19 - TSS region transcription start site region 121301
Tssr121302 13 4279420 to 4279450 30 - TSS region transcription start site region 121302
Hpi1 13 4364026 to 52947604 48583578 QTL hapatic PMN infiltration 1
D13Mit236 13 4364026 to 4364122 96 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 236
Gm9973 13 4364550 to 4391259 26709 - lncRNA gene predicted gene 9973
Gm47951 13 4368681 to 4372417 3736 + pseudogene predicted gene, 47951
Tssr121303 13 4391236 to 4391249 13 - TSS region transcription start site region 121303
Akr1c6 13 4434311 to 4457530 23219 + protein coding gene aldo-keto reductase family 1, member C6
Tssr118224 13 4434337 to 4434388 51 + TSS region transcription start site region 118224
Tssr118225 13 4436094 to 4436132 38 + TSS region transcription start site region 118225
Tssr118226 13 4439400 to 4439408 8 + TSS region transcription start site region 118226
Gm48010 13 4465680 to 4466566 886 - lincRNA gene predicted gene, 48010
Akr1c20 13 4486849 to 4523345 36496 - protein coding gene aldo-keto reductase family 1, member C20
Tssr121304 13 4523322 to 4523355 33 - TSS region transcription start site region 121304
Gm40657 13 4555411 to 4565781 10370 - lncRNA gene predicted gene, 40657
Akr1c21 13 4574075 to 4586541 12466 + protein coding gene aldo-keto reductase family 1, member C21
Tssr118227 13 4574075 to 4574088 13 + TSS region transcription start site region 118227
Akr1e1 13 4592490 to 4609164 16674 - protein coding gene aldo-keto reductase family 1, member E1
Tssr121305 13 4609122 to 4609189 67 - TSS region transcription start site region 121305
Tssr118228 13 4614126 to 4614127 1 + TSS region transcription start site region 118228
Rpl29-ps2 13 4614127 to 4614793 666 + pseudogene ribosomal protein L29, pseudogene 2
Tssr118229 13 4725579 to 4725594 15 + TSS region transcription start site region 118229
Gm40658 13 4725779 to 4745537 19758 + lincRNA gene predicted gene, 40658