Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:35997620-36657595

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lyrm4 13 35978797 to 36117357 138560 - protein coding gene LYR motif containing 4
Gm48770 13 35995453 to 36014464 19011 + antisense lncRNA gene predicted gene, 48770
Gm48765 13 36006725 to 36189723 182998 - antisense lncRNA gene predicted gene, 48765
Tssr119256 13 36096860 to 36096865 5 + TSS region transcription start site region 119256
9530001P21Rik 13 36110574 to 36113824 3250 unclassified gene RIKEN cDNA 9530001P21 gene
Cpgi5445 13 36117001 to 36118128 1127 CpG island CpG island 5445
Tssr122087 13 36117243 to 36117254 11 - TSS region transcription start site region 122087
Tssr122088 13 36117269 to 36117270 1 - TSS region transcription start site region 122088
Tssr119257 13 36117349 to 36117367 18 + TSS region transcription start site region 119257
Tssr122089 13 36117351 to 36117393 42 - TSS region transcription start site region 122089
Tssr122090 13 36117484 to 36117587 103 - TSS region transcription start site region 122090
Fars2 13 36117620 to 36537595 419975 + protein coding gene phenylalanine-tRNA synthetase 2 (mitochondrial)
Tssr119258 13 36117848 to 36117910 62 + TSS region transcription start site region 119258
Tssr119259 13 36117911 to 36117933 22 + TSS region transcription start site region 119259
Tssr119260 13 36120854 to 36120863 9 + TSS region transcription start site region 119260
D13Mit18 13 36166154 to 36166348 194 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 18
Gm48769 13 36182712 to 36183048 336 - pseudogene predicted gene, 48769
Gm40912 13 36207753 to 36228022 20269 + lncRNA gene predicted gene, 40912
Gm48766 13 36252359 to 36256920 4561 + unclassified gene predicted gene, 48766
Tssr119261 13 36255479 to 36255484 5 + TSS region transcription start site region 119261
Tssr119262 13 36263150 to 36263153 3 + TSS region transcription start site region 119262
Tssr119263 13 36359793 to 36359797 4 + TSS region transcription start site region 119263
V25Dq7 13 36400000 to 36400000 0 QTL vitamin D inactive form serum level QTL 7
Tssr119264 13 36423378 to 36423385 7 + TSS region transcription start site region 119264
Gm48763 13 36458447 to 36459280 833 - unclassified gene predicted gene, 48763
Tssr119265 13 36475088 to 36475145 57 + TSS region transcription start site region 119265
Tssr119266 13 36486140 to 36486146 6 + TSS region transcription start site region 119266
Gm8277 13 36558466 to 36559065 599 - pseudogene predicted gene 8277
Gm48767 13 36569764 to 36575934 6170 - antisense lncRNA gene predicted gene, 48767
Tssr122091 13 36577978 to 36578000 22 - TSS region transcription start site region 122091
Cpgi5446 13 36578576 to 36579099 523 CpG island CpG island 5446
4933436N17Rik 13 36582091 to 36583526 1435 - unclassified gene RIKEN cDNA 4933436N17 gene
Gm46409 13 36612734 to 36633313 20579 + sense intronic lncRNA gene predicted gene, 46409
Cpgi5447 13 36612992 to 36613237 245 CpG island CpG island 5447
Tssr122092 13 36620931 to 36620936 5 - TSS region transcription start site region 122092
Gm46410 13 36645120 to 36653209 8089 + lncRNA gene predicted gene, 46410
Gm26395 13 36654405 to 36654536 131 + snoRNA gene predicted gene, 26395