Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:35451478-38001491

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248 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48703 13 35395383 to 35455832 60449 + lincRNA gene predicted gene, 48703
Cpgi5441 13 35503527 to 35503692 165 CpG island CpG island 5441
D13Mit4 13 35524846 to 35525029 183 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 4
Gm48704 13 35543902 to 35545484 1582 + lincRNA gene predicted gene, 48704
Gm48707 13 35603030 to 35660777 57747 - lincRNA gene predicted gene, 48707
Cdyl 13 35659833 to 35874063 214230 + protein coding gene chromodomain protein, Y chromosome-like
Tssr119239 13 35659856 to 35659870 14 + TSS region transcription start site region 119239
Tssr119240 13 35662133 to 35662138 5 + TSS region transcription start site region 119240
Gm22126 13 35662135 to 35662276 141 + snRNA gene predicted gene, 22126
D13Mit85 13 35671614 to 35671787 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 85
D13Mit274 13 35736190 to 35736309 119 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 274
Tssr119241 13 35738437 to 35738462 25 + TSS region transcription start site region 119241
Tssr119242 13 35738487 to 35738530 43 + TSS region transcription start site region 119242
Cpgi5442 13 35740435 to 35742473 2038 CpG island CpG island 5442
Tssr119243 13 35741374 to 35741385 11 + TSS region transcription start site region 119243
Tssr119244 13 35741408 to 35741516 108 + TSS region transcription start site region 119244
Gm48708 13 35773573 to 35776896 3323 - antisense lncRNA gene predicted gene, 48708
Tssr119245 13 35785196 to 35785200 4 + TSS region transcription start site region 119245
Gm48706 13 35798750 to 35802136 3386 + unclassified gene predicted gene, 48706
Tssr119246 13 35833556 to 35833559 3 + TSS region transcription start site region 119246
Tssr119247 13 35834837 to 35834841 4 + TSS region transcription start site region 119247
Tssr119248 13 35853556 to 35853568 12 + TSS region transcription start site region 119248
Tssr119249 13 35870744 to 35870750 6 + TSS region transcription start site region 119249
Gssq1 13 35876925 to 35877067 142 QTL glomerulosclerosis severity QTL 1
D13Mit60 13 35876925 to 35877067 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 60
Scgq5 13 35876925 to 96102654 60225729 QTL spontaneous crescentic glomerulonephritis QTL 5
Rpp40 13 35893472 to 35906359 12887 - protein coding gene ribonuclease P 40 subunit
Gm48746 13 35905457 to 35921389 15932 + lincRNA gene predicted gene, 48746
Cpgi5443 13 35905869 to 35906391 522 CpG island CpG island 5443
Tssr122086 13 35906324 to 35906364 40 - TSS region transcription start site region 122086
Gm48756 13 35937549 to 35937833 284 - pseudogene predicted gene, 48756
Ppp1r3g 13 35958839 to 35970388 11549 + protein coding gene protein phosphatase 1, regulatory subunit 3G
Tssr119250 13 35958850 to 35958862 12 + TSS region transcription start site region 119250
Tssr119251 13 35958872 to 35958886 14 + TSS region transcription start site region 119251
Gm30127 13 35959003 to 35961155 2152 - antisense lncRNA gene predicted gene, 30127
Tssr4042 13 35961388 to 35961393 5 + TSS region transcription start site region 4042
Tssr119252 13 35963127 to 35963131 4 + TSS region transcription start site region 119252
Tssr119253 13 35963570 to 35963575 5 + TSS region transcription start site region 119253
Tssr119254 13 35967860 to 35967888 28 + TSS region transcription start site region 119254
Cpgi5444 13 35968037 to 35969812 1775 CpG island CpG island 5444
Tssr119255 13 35968467 to 35968471 4 + TSS region transcription start site region 119255
Lyrm4 13 35978797 to 36117357 138560 - protein coding gene LYR motif containing 4
Tmed10-ps 13 35990861 to 35991520 659 - pseudogene transmembrane p24 trafficking protein 10, pseudogene
Gm18132 13 35992132 to 35993428 1296 + pseudogene predicted gene, 18132
Gm48770 13 35995453 to 36014464 19011 + antisense lncRNA gene predicted gene, 48770
Gm48765 13 36006725 to 36189723 182998 - antisense lncRNA gene predicted gene, 48765
Tssr119256 13 36096860 to 36096865 5 + TSS region transcription start site region 119256
9530001P21Rik 13 36110574 to 36113824 3250 unclassified gene RIKEN cDNA 9530001P21 gene
Cpgi5445 13 36117001 to 36118128 1127 CpG island CpG island 5445
Tssr122087 13 36117243 to 36117254 11 - TSS region transcription start site region 122087
Tssr122088 13 36117269 to 36117270 1 - TSS region transcription start site region 122088
Tssr119257 13 36117349 to 36117367 18 + TSS region transcription start site region 119257
Tssr122089 13 36117351 to 36117393 42 - TSS region transcription start site region 122089
Tssr122090 13 36117484 to 36117587 103 - TSS region transcription start site region 122090
Fars2 13 36117620 to 36537595 419975 + protein coding gene phenylalanine-tRNA synthetase 2 (mitochondrial)
Tssr119258 13 36117848 to 36117910 62 + TSS region transcription start site region 119258
Tssr119259 13 36117911 to 36117933 22 + TSS region transcription start site region 119259
Tssr119260 13 36120854 to 36120863 9 + TSS region transcription start site region 119260
D13Mit18 13 36166154 to 36166348 194 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 18
Gm48769 13 36182712 to 36183048 336 - pseudogene predicted gene, 48769
Gm40912 13 36207753 to 36228022 20269 + lncRNA gene predicted gene, 40912
Gm48766 13 36252359 to 36256920 4561 + unclassified gene predicted gene, 48766
Tssr119261 13 36255479 to 36255484 5 + TSS region transcription start site region 119261
Tssr119262 13 36263150 to 36263153 3 + TSS region transcription start site region 119262
Tssr119263 13 36359793 to 36359797 4 + TSS region transcription start site region 119263
V25Dq7 13 36400000 to 36400000 0 QTL vitamin D inactive form serum level QTL 7
Tssr119264 13 36423378 to 36423385 7 + TSS region transcription start site region 119264
Gm48763 13 36458447 to 36459280 833 - unclassified gene predicted gene, 48763
Tssr119265 13 36475088 to 36475145 57 + TSS region transcription start site region 119265
Tssr119266 13 36486140 to 36486146 6 + TSS region transcription start site region 119266
Gm8277 13 36558466 to 36559065 599 - pseudogene predicted gene 8277
Gm48767 13 36569764 to 36575934 6170 - antisense lncRNA gene predicted gene, 48767
Tssr122091 13 36577978 to 36578000 22 - TSS region transcription start site region 122091
Cpgi5446 13 36578576 to 36579099 523 CpG island CpG island 5446
4933436N17Rik 13 36582091 to 36583526 1435 - unclassified gene RIKEN cDNA 4933436N17 gene
Gm46409 13 36612734 to 36633313 20579 + sense intronic lncRNA gene predicted gene, 46409
Cpgi5447 13 36612992 to 36613237 245 CpG island CpG island 5447
Tssr122092 13 36620931 to 36620936 5 - TSS region transcription start site region 122092
Gm46410 13 36645120 to 36653209 8089 + lncRNA gene predicted gene, 46410
Gm26395 13 36654405 to 36654536 131 + snoRNA gene predicted gene, 26395
D13Dcr3 13 36676310 to 36676405 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 3
Gm38636 13 36717255 to 36725176 7921 + lncRNA gene predicted gene, 38636
Cpgi5448 13 36724510 to 36724911 401 CpG island CpG island 5448
Nrn1 13 36725622 to 36734477 8855 - protein coding gene neuritin 1
Tssr122093 13 36726426 to 36726445 19 - TSS region transcription start site region 122093
Tssr122094 13 36726478 to 36726491 13 - TSS region transcription start site region 122094
Tssr122095 13 36726524 to 36726535 11 - TSS region transcription start site region 122095
Cpgi5449 13 36726534 to 36727646 1112 CpG island CpG island 5449
Tssr122096 13 36726596 to 36726620 24 - TSS region transcription start site region 122096
Gm30177 13 36727304 to 36729167 1863 + antisense lncRNA gene predicted gene, 30177
Tssr119267 13 36727324 to 36727348 24 + TSS region transcription start site region 119267
Tssr119268 13 36730042 to 36730055 13 + TSS region transcription start site region 119268
Tssr119269 13 36730068 to 36730078 10 + TSS region transcription start site region 119269
Tssr119270 13 36730096 to 36730111 15 + TSS region transcription start site region 119270
Cpgi5450 13 36731921 to 36732343 422 CpG island CpG island 5450
Tssr122097 13 36734266 to 36734275 9 - TSS region transcription start site region 122097
Tssr122098 13 36734293 to 36734308 15 - TSS region transcription start site region 122098
Tssr122099 13 36734371 to 36734385 14 - TSS region transcription start site region 122099
Tssr122100 13 36734404 to 36734415 11 - TSS region transcription start site region 122100
Tssr122101 13 36734426 to 36734447 21 - TSS region transcription start site region 122101
Tssr122102 13 36734450 to 36734492 42 - TSS region transcription start site region 122102
Cpgi5451 13 36734811 to 36735455 644 CpG island CpG island 5451
Tssr119271 13 36734856 to 36734867 11 + TSS region transcription start site region 119271
Cpgi5452 13 36735915 to 36736805 890 CpG island CpG island 5452
Gm49144 13 36836366 to 36885596 49230 + antisense lncRNA gene predicted gene, 49144
Tssr119272 13 36857567 to 36857577 10 + TSS region transcription start site region 119272
Gm47675 13 36864016 to 36864625 609 - lincRNA gene predicted gene, 47675
F13a1 13 36867178 to 37050244 183066 - protein coding gene coagulation factor XIII, A1 subunit
Tssr4043 13 36885431 to 36885432 1 + TSS region transcription start site region 4043
D13Mit266 13 36941505 to 36941635 130 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 266
Gm30489 13 36963239 to 36973329 10090 + antisense lncRNA gene predicted gene, 30489
Tssr122103 13 36971599 to 36971602 3 - TSS region transcription start site region 122103
Cpgi5453 13 36988911 to 36989081 170 CpG island CpG island 5453
Gm30240 13 36989093 to 36997851 8758 + lncRNA gene predicted gene, 30240
Tssr122104 13 37049182 to 37049191 9 - TSS region transcription start site region 122104
Tssr122105 13 37049203 to 37049220 17 - TSS region transcription start site region 122105
Tssr122106 13 37050237 to 37050274 37 - TSS region transcription start site region 122106
Tssr122107 13 37050290 to 37050301 11 - TSS region transcription start site region 122107
Gm30549 13 37070967 to 37072531 1564 + lncRNA gene predicted gene, 30549
Gm18643 13 37092547 to 37095553 3006 - pseudogene predicted gene, 18643
Tssr122108 13 37103969 to 37104001 32 - TSS region transcription start site region 122108
Gm47707 13 37156018 to 37157755 1737 + lincRNA gene predicted gene, 47707
Gm30600 13 37237649 to 37244907 7258 - lincRNA gene predicted gene, 30600
Gm47709 13 37248660 to 37252165 3505 + lincRNA gene predicted gene, 47709
Tssr122109 13 37255399 to 37255404 5 - TSS region transcription start site region 122109
Cpgi5454 13 37311670 to 37311899 229 CpG island CpG island 5454
D13Mit275.2 13 37323414 to 37323552 138 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 275.2
D13Mit275 13 37323521 to 37323627 106 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 275
Gm47711 13 37326466 to 37327047 581 + lincRNA gene predicted gene, 47711
Tssr119273 13 37333699 to 37333710 11 + TSS region transcription start site region 119273
Gm40913 13 37333725 to 37341997 8272 + lncRNA gene predicted gene, 40913
Tssr119274 13 37333757 to 37333773 16 + TSS region transcription start site region 119274
Tssr119275 13 37345288 to 37345303 15 + TSS region transcription start site region 119275
Tssr119276 13 37345338 to 37345365 27 + TSS region transcription start site region 119276
Ly86 13 37345345 to 37419036 73691 + protein coding gene lymphocyte antigen 86
Tssr119277 13 37345384 to 37345407 23 + TSS region transcription start site region 119277
Tssr119278 13 37345415 to 37345432 17 + TSS region transcription start site region 119278
Tssr119279 13 37345457 to 37345480 23 + TSS region transcription start site region 119279
Tssr119280 13 37376618 to 37376641 23 + TSS region transcription start site region 119280
Tssr119281 13 37376924 to 37376945 21 + TSS region transcription start site region 119281
Tssr119282 13 37378534 to 37378545 11 + TSS region transcription start site region 119282
Tssr119283 13 37378576 to 37378588 12 + TSS region transcription start site region 119283
Tssr119284 13 37378695 to 37378712 17 + TSS region transcription start site region 119284
Tssr119285 13 37378795 to 37378828 33 + TSS region transcription start site region 119285
Tssr119286 13 37401002 to 37401005 3 + TSS region transcription start site region 119286
Tssr119287 13 37403977 to 37403987 10 + TSS region transcription start site region 119287
Tssr119288 13 37415492 to 37415521 29 + TSS region transcription start site region 119288
Tssr119289 13 37418535 to 37418548 13 + TSS region transcription start site region 119289
Tssr119290 13 37418662 to 37418685 23 + TSS region transcription start site region 119290
Tssr119291 13 37418763 to 37418793 30 + TSS region transcription start site region 119291
Tssr119292 13 37418842 to 37418860 18 + TSS region transcription start site region 119292
Gm4035 13 37421943 to 37435082 13139 - lincRNA gene predicted gene 4035
Gm47730 13 37439593 to 37440454 861 - lincRNA gene predicted gene, 47730
Tssr122110 13 37440068 to 37440089 21 - TSS region transcription start site region 122110
Gm29459 13 37449400 to 37451157 1757 - lincRNA gene predicted gene 29459
Gm29458 13 37452212 to 37453208 996 - lincRNA gene predicted gene 29458
AU017834 13 37472037 to 37479212 7175 unclassified gene expressed sequence AU017834
Gm47731 13 37472038 to 37479213 7175 + lincRNA gene predicted gene, 47731
Gm40914 13 37477085 to 37487980 10895 - lncRNA gene predicted gene, 40914
Tssr122111 13 37477842 to 37477871 29 - TSS region transcription start site region 122111
Tssr119293 13 37482381 to 37482392 11 + TSS region transcription start site region 119293
Gm47732 13 37482385 to 37483150 765 + lincRNA gene predicted gene, 47732
Tssr119294 13 37483405 to 37483427 22 + TSS region transcription start site region 119294
Gm30863 13 37490045 to 37532958 42913 - lncRNA gene predicted gene, 30863
Gm47734 13 37504206 to 37507752 3546 - lincRNA gene predicted gene, 47734
Gm29590 13 37509492 to 37512421 2929 + lincRNA gene predicted gene 29590
Lncbate6 13 37541357 to 37549725 8368 + lincRNA gene brown adipose tissue enriched long noncoding RNA 6
Tssr119295 13 37543057 to 37543073 16 + TSS region transcription start site region 119295
Tssr119296 13 37543076 to 37543103 27 + TSS region transcription start site region 119296
Gm47751 13 37561945 to 37564972 3027 - lincRNA gene predicted gene, 47751
D13Mit117 13 37562963 to 37563080 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 117
Heal17 13 37562963 to 37563080 117 QTL wound healing/regeneration 17
Tssr119297 13 37578393 to 37578394 1 + TSS region transcription start site region 119297
Tssr119298 13 37581058 to 37581110 52 + TSS region transcription start site region 119298
Gm47754 13 37581077 to 37589313 8236 + lincRNA gene predicted gene, 47754
Tssr119299 13 37581116 to 37581144 28 + TSS region transcription start site region 119299
Tssr119300 13 37581208 to 37581218 10 + TSS region transcription start site region 119300
Gm47753 13 37582271 to 37582564 293 + pseudogene predicted gene, 47753
Tssr119301 13 37598719 to 37598728 9 + TSS region transcription start site region 119301
Tssr119302 13 37598760 to 37598773 13 + TSS region transcription start site region 119302
Gm40915 13 37616964 to 37627603 10639 - lincRNA gene predicted gene, 40915
Gm40916 13 37633785 to 37643342 9557 - lincRNA gene predicted gene, 40916
Gm40917 13 37643905 to 37648099 4194 - lncRNA gene predicted gene, 40917
AI463229 13 37657022 to 37667734 10712 - lincRNA gene expressed sequence AI463229
Cpgi5455 13 37657338 to 37657614 276 CpG island CpG island 5455
D13Mit38 13 37666021 to 37666163 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 38
Gm49350 13 37684925 to 37686425 1500 - lincRNA gene predicted gene, 49350
Gm40918 13 37692089 to 37717648 25559 - lincRNA gene predicted gene, 40918
Gm49351 13 37697306 to 37698158 852 - pseudogene predicted gene, 49351
Tssr119303 13 37700999 to 37701000 1 + TSS region transcription start site region 119303
Gm45936 13 37717382 to 37734742 17360 - lncRNA gene predicted gene, 45936
Tssr122112 13 37729823 to 37729830 7 - TSS region transcription start site region 122112
Tssr122113 13 37743869 to 37743870 1 - TSS region transcription start site region 122113
Gm31600 13 37761545 to 37767935 6390 + lincRNA gene predicted gene, 31600
Tssr122114 13 37769931 to 37769935 4 - TSS region transcription start site region 122114
Cpgi5456 13 37777906 to 37779132 1226 CpG island CpG island 5456
Tssr119304 13 37778384 to 37778403 19 + TSS region transcription start site region 119304
Rreb1 13 37778400 to 37952005 173605 + protein coding gene ras responsive element binding protein 1
Tssr119305 13 37778412 to 37778424 12 + TSS region transcription start site region 119305
Tssr119306 13 37778438 to 37778468 30 + TSS region transcription start site region 119306