Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:34892044-35532052

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prpf4b 13 34875302 to 34906064 30762 + protein coding gene pre-mRNA processing factor 4B
Fam217a 13 34909960 to 34924310 14350 - protein coding gene family with sequence similarity 217, member A
Cpgi5437 13 34916604 to 34917111 507 CpG island CpG island 5437
Tssr122071 13 34916977 to 34917038 61 - TSS region transcription start site region 122071
Tssr122072 13 34924343 to 34924367 24 - TSS region transcription start site region 122072
Tssr119234 13 34924400 to 34924404 4 + TSS region transcription start site region 119234
4933417A18Rik 13 34924409 to 34955875 31466 + protein coding gene RIKEN cDNA 4933417A18 gene
Tssr119235 13 34924413 to 34924426 13 + TSS region transcription start site region 119235
Tssr119236 13 34924428 to 34924436 8 + TSS region transcription start site region 119236
Tssr119237 13 34924438 to 34924455 17 + TSS region transcription start site region 119237
Gm8245 13 34940643 to 34941629 986 + pseudogene predicted gene 8245
Eci3 13 34946614 to 34963810 17196 - protein coding gene enoyl-Coenzyme A delta isomerase 3
Gm47217 13 34962902 to 34963060 158 - pseudogene predicted gene, 47217
Cpgi5438 13 34963572 to 34963878 306 CpG island CpG island 5438
Tssr122073 13 34963791 to 34963816 25 - TSS region transcription start site region 122073
Tssr122074 13 34963825 to 34963836 11 - TSS region transcription start site region 122074
Gm16984 13 34963949 to 34983318 19369 + antisense lncRNA gene predicted gene, 16984
9430081G06Rik 13 34967434 to 34968619 1185 unclassified gene RIKEN cDNA 9430081G06 gene
Hypt 13 34972809 to 34972941 132 QTL hypertension
D13Mit198 13 34972809 to 34972941 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 198
Eci2 13 34977748 to 35027090 49342 - protein coding gene enoyl-Coenzyme A delta isomerase 2
Tssr122075 13 34990838 to 34990879 41 - TSS region transcription start site region 122075
Tssr122076 13 34993196 to 34993219 23 - TSS region transcription start site region 122076
Tssr122077 13 34993228 to 34993246 18 - TSS region transcription start site region 122077
Cpgi5439 13 34993721 to 34994318 597 CpG island CpG island 5439
Tssr122078 13 34993873 to 34993914 41 - TSS region transcription start site region 122078
Tssr122079 13 34994062 to 34994086 24 - TSS region transcription start site region 122079
Tssr122080 13 34994103 to 34994148 45 - TSS region transcription start site region 122080
D13Mit242 13 34998422 to 34998546 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 242
Gm46408 13 35007680 to 35011090 3410 - pseudogene predicted gene, 46408
Tssr122081 13 35027033 to 35027055 22 - TSS region transcription start site region 122081
Tssr122082 13 35027077 to 35027099 22 - TSS region transcription start site region 122082
Gm48626 13 35027354 to 35031946 4592 - lincRNA gene predicted gene, 48626
Gm48629 13 35065461 to 35067620 2159 + lincRNA gene predicted gene, 48629
Gm40910 13 35078564 to 35083396 4832 + lincRNA gene predicted gene, 40910
4930529N20Rik 13 35167147 to 35167824 677 - lincRNA gene RIKEN cDNA 4930529N20 gene
Tssr122083 13 35167803 to 35167806 3 - TSS region transcription start site region 122083
1700011B04Rik 13 35181623 to 35188014 6391 + lncRNA gene RIKEN cDNA 1700011B04 gene
Cpgi5440 13 35189033 to 35189361 328 CpG island CpG island 5440
Tssr119238 13 35189260 to 35189267 7 + TSS region transcription start site region 119238
1700019C18Rik 13 35210660 to 35212048 1388 - lincRNA gene RIKEN cDNA 1700019C18 gene
Tssr122084 13 35211996 to 35212029 33 - TSS region transcription start site region 122084
Tssr122085 13 35212044 to 35212052 8 - TSS region transcription start site region 122085
Gm48694 13 35242971 to 35256521 13550 - lincRNA gene predicted gene, 48694
Gm22674 13 35293147 to 35293277 130 - snoRNA gene predicted gene, 22674
Gm48703 13 35395383 to 35455832 60449 + lincRNA gene predicted gene, 48703
Cpgi5441 13 35503527 to 35503692 165 CpG island CpG island 5441
D13Mit4 13 35524846 to 35525029 183 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 4