Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:34337642-34967649

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc22a23 13 34179158 to 34345182 166024 - protein coding gene solute carrier family 22, member 23
Gm46407 13 34342722 to 34343456 734 + lncRNA gene predicted gene, 46407
Cpgi5432 13 34343772 to 34346023 2251 CpG island CpG island 5432
Tssr122057 13 34345174 to 34345273 99 - TSS region transcription start site region 122057
Tssr122058 13 34345639 to 34345674 35 - TSS region transcription start site region 122058
Tssr122059 13 34345979 to 34346012 33 - TSS region transcription start site region 122059
Tssr4040 13 34355403 to 34355415 12 - TSS region transcription start site region 4040
Gm6129 13 34393724 to 34394524 800 - pseudogene predicted gene 6129
Gm47120 13 34426230 to 34426431 201 - pseudogene predicted gene, 47120
D13Mit241 13 34439478 to 34439590 112 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 241
Gm40908 13 34459557 to 34482181 22624 - lncRNA gene predicted gene, 40908
Gm40909 13 34500728 to 34506511 5783 - lincRNA gene predicted gene, 40909
Gm36758 13 34561986 to 34562295 309 + pseudogene predicted gene, 36758
Gm47127 13 34610827 to 34612246 1419 - lincRNA gene predicted gene, 47127
Tssr4041 13 34627755 to 34627759 4 + TSS region transcription start site region 4041
Pxdc1 13 34627840 to 34653133 25293 - protein coding gene PX domain containing 1
Tssr122060 13 34628318 to 34628325 7 - TSS region transcription start site region 122060
Tssr122061 13 34649471 to 34649474 3 - TSS region transcription start site region 122061
Cpgi5433 13 34651470 to 34653341 1871 CpG island CpG island 5433
Tssr122062 13 34652642 to 34652649 7 - TSS region transcription start site region 122062
Tssr122063 13 34652673 to 34652688 15 - TSS region transcription start site region 122063
Tssr122064 13 34652883 to 34652896 13 - TSS region transcription start site region 122064
Tssr122065 13 34652898 to 34652925 27 - TSS region transcription start site region 122065
Tssr119223 13 34652910 to 34652941 31 + TSS region transcription start site region 119223
Gm15908 13 34652923 to 34666774 13851 + antisense lncRNA gene predicted gene 15908
Tssr122066 13 34652933 to 34652976 43 - TSS region transcription start site region 122066
Tssr122067 13 34653083 to 34653114 31 - TSS region transcription start site region 122067
Gm47149 13 34680733 to 34680921 188 - pseudogene predicted gene, 47149
Gm47150 13 34711449 to 34715030 3581 + lincRNA gene predicted gene, 47150
Tssr122068 13 34715488 to 34715492 4 - TSS region transcription start site region 122068
Gm47151 13 34718056 to 34720751 2695 - lincRNA gene predicted gene, 47151
Gm47152 13 34720682 to 34728661 7979 + lincRNA gene predicted gene, 47152
Tssr119224 13 34734837 to 34734862 25 + TSS region transcription start site region 119224
Fam50b 13 34734850 to 34747623 12773 + protein coding gene family with sequence similarity 50, member B
Tssr119225 13 34734871 to 34734882 11 + TSS region transcription start site region 119225
Tssr119226 13 34739607 to 34739636 29 + TSS region transcription start site region 119226
Cpgi5434 13 34746528 to 34747582 1054 CpG island CpG island 5434
Gm47157 13 34781585 to 34814544 32959 - lincRNA gene predicted gene, 47157
Gm8231 13 34865795 to 34866577 782 - pseudogene predicted gene 8231
Gm36839 13 34873628 to 34875240 1612 - lincRNA gene predicted gene, 36839
Cpgi5435 13 34874087 to 34874580 493 CpG island CpG island 5435
Tssr122069 13 34874396 to 34874450 54 - TSS region transcription start site region 122069
Tssr122070 13 34874456 to 34874469 13 - TSS region transcription start site region 122070
Cpgi5436 13 34875239 to 34876231 992 CpG island CpG island 5436
Prpf4b 13 34875302 to 34906064 30762 + protein coding gene pre-mRNA processing factor 4B
Tssr119227 13 34875488 to 34875515 27 + TSS region transcription start site region 119227
Tssr119228 13 34875520 to 34875562 42 + TSS region transcription start site region 119228
Tssr119229 13 34875563 to 34875602 39 + TSS region transcription start site region 119229
Tssr119230 13 34875603 to 34875604 1 + TSS region transcription start site region 119230
Tssr119231 13 34883225 to 34883250 25 + TSS region transcription start site region 119231
Tssr119232 13 34883587 to 34883600 13 + TSS region transcription start site region 119232
Tssr119233 13 34888151 to 34888164 13 + TSS region transcription start site region 119233
Fam217a 13 34909960 to 34924310 14350 - protein coding gene family with sequence similarity 217, member A
Cpgi5437 13 34916604 to 34917111 507 CpG island CpG island 5437
Tssr122071 13 34916977 to 34917038 61 - TSS region transcription start site region 122071
Tssr122072 13 34924343 to 34924367 24 - TSS region transcription start site region 122072
Tssr119234 13 34924400 to 34924404 4 + TSS region transcription start site region 119234
4933417A18Rik 13 34924409 to 34955875 31466 + protein coding gene RIKEN cDNA 4933417A18 gene
Tssr119235 13 34924413 to 34924426 13 + TSS region transcription start site region 119235
Tssr119236 13 34924428 to 34924436 8 + TSS region transcription start site region 119236
Tssr119237 13 34924438 to 34924455 17 + TSS region transcription start site region 119237
Gm8245 13 34940643 to 34941629 986 + pseudogene predicted gene 8245
Eci3 13 34946614 to 34963810 17196 - protein coding gene enoyl-Coenzyme A delta isomerase 3
Gm47217 13 34962902 to 34963060 158 - pseudogene predicted gene, 47217
Cpgi5438 13 34963572 to 34963878 306 CpG island CpG island 5438
Tssr122073 13 34963791 to 34963816 25 - TSS region transcription start site region 122073
Tssr122074 13 34963825 to 34963836 11 - TSS region transcription start site region 122074
Gm16984 13 34963949 to 34983318 19369 + antisense lncRNA gene predicted gene, 16984
9430081G06Rik 13 34967434 to 34968619 1185 unclassified gene RIKEN cDNA 9430081G06 gene