Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:34051965-34502252

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bphl 13 34037597 to 34074074 36477 + protein coding gene biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
Tubb2a 13 34074278 to 34078008 3730 - protein coding gene tubulin, beta 2A class IIA
Cpgi5428 13 34077668 to 34078310 642 CpG island CpG island 5428
Tssr122050 13 34077992 to 34078015 23 - TSS region transcription start site region 122050
4930447K03Rik 13 34084155 to 34113272 29117 - lncRNA gene RIKEN cDNA 4930447K03 gene
Gm47065 13 34087137 to 34089027 1890 - pseudogene predicted gene, 47065
Tssr119219 13 34090702 to 34090719 17 + TSS region transcription start site region 119219
Tssr122051 13 34113258 to 34113267 9 - TSS region transcription start site region 122051
Gm47076 13 34119701 to 34122465 2764 + lincRNA gene predicted gene, 47076
Tubb2b 13 34127008 to 34130354 3346 - protein coding gene tubulin, beta 2B class IIB
Tssr122052 13 34128422 to 34128455 33 - TSS region transcription start site region 122052
Cpgi5429 13 34129783 to 34130778 995 CpG island CpG island 5429
Tssr122053 13 34130345 to 34130361 16 - TSS region transcription start site region 122053
Tssr119220 13 34130584 to 34130606 22 + TSS region transcription start site region 119220
Cpgi5430 13 34131459 to 34131752 293 CpG island CpG island 5430
Gm36500 13 34133860 to 34137654 3794 + lincRNA gene predicted gene, 36500
Gm36549 13 34148432 to 34151024 2592 - lncRNA gene predicted gene, 36549
Cpgi5431 13 34162726 to 34163517 791 CpG island CpG island 5431
Tssr119221 13 34162953 to 34163033 80 + TSS region transcription start site region 119221
Psmg4 13 34162964 to 34178172 15208 + protein coding gene proteasome (prosome, macropain) assembly chaperone 4
Tssr119222 13 34163039 to 34163055 16 + TSS region transcription start site region 119222
Slc22a23 13 34179158 to 34345182 166024 - protein coding gene solute carrier family 22, member 23
Tssr122054 13 34182665 to 34182683 18 - TSS region transcription start site region 122054
2900079J23Rik 13 34196632 to 34196883 251 unclassified gene RIKEN cDNA 2900079J23 gene
Tssr122055 13 34246631 to 34246642 11 - TSS region transcription start site region 122055
Tssr122056 13 34246947 to 34246954 7 - TSS region transcription start site region 122056
Gm24530 13 34276965 to 34277252 287 - unclassified non-coding RNA gene predicted gene, 24530
Gm47086 13 34318808 to 34319217 409 + pseudogene predicted gene, 47086
Gm46407 13 34342722 to 34343456 734 + lncRNA gene predicted gene, 46407
Cpgi5432 13 34343772 to 34346023 2251 CpG island CpG island 5432
Tssr122057 13 34345174 to 34345273 99 - TSS region transcription start site region 122057
Tssr122058 13 34345639 to 34345674 35 - TSS region transcription start site region 122058
Tssr122059 13 34345979 to 34346012 33 - TSS region transcription start site region 122059
Tssr4040 13 34355403 to 34355415 12 - TSS region transcription start site region 4040
Gm6129 13 34393724 to 34394524 800 - pseudogene predicted gene 6129
Gm47120 13 34426230 to 34426431 201 - pseudogene predicted gene, 47120
D13Mit241 13 34439478 to 34439590 112 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 241
Gm40908 13 34459557 to 34482181 22624 - lncRNA gene predicted gene, 40908
Gm40909 13 34500728 to 34506511 5783 - lincRNA gene predicted gene, 40909