Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:34024557-34917181

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ripk1 13 34002363 to 34035170 32807 + protein coding gene receptor (TNFRSF)-interacting serine-threonine kinase 1
Gm17084 13 34034526 to 34035036 510 + pseudogene predicted gene 17084
Cpgi5427 13 34037409 to 34037972 563 CpG island CpG island 5427
Tssr119211 13 34037581 to 34037587 6 + TSS region transcription start site region 119211
Tssr119212 13 34037591 to 34037605 14 + TSS region transcription start site region 119212
Bphl 13 34037597 to 34074074 36477 + protein coding gene biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
Tssr119213 13 34037612 to 34037615 3 + TSS region transcription start site region 119213
Tssr119214 13 34037619 to 34037655 36 + TSS region transcription start site region 119214
Tssr119215 13 34037661 to 34037665 4 + TSS region transcription start site region 119215
Tssr119216 13 34037666 to 34037682 16 + TSS region transcription start site region 119216
Tssr4039 13 34046726 to 34046735 9 + TSS region transcription start site region 4039
Tssr119217 13 34046802 to 34046812 10 + TSS region transcription start site region 119217
Tssr119218 13 34046816 to 34046821 5 + TSS region transcription start site region 119218
Tssr122049 13 34050563 to 34050574 11 - TSS region transcription start site region 122049
Tubb2a 13 34074278 to 34078008 3730 - protein coding gene tubulin, beta 2A class IIA
Cpgi5428 13 34077668 to 34078310 642 CpG island CpG island 5428
Tssr122050 13 34077992 to 34078015 23 - TSS region transcription start site region 122050
4930447K03Rik 13 34084155 to 34113272 29117 - lncRNA gene RIKEN cDNA 4930447K03 gene
Gm47065 13 34087137 to 34089027 1890 - pseudogene predicted gene, 47065
Tssr119219 13 34090702 to 34090719 17 + TSS region transcription start site region 119219
Tssr122051 13 34113258 to 34113267 9 - TSS region transcription start site region 122051
Gm47076 13 34119701 to 34122465 2764 + lincRNA gene predicted gene, 47076
Tubb2b 13 34127008 to 34130354 3346 - protein coding gene tubulin, beta 2B class IIB
Tssr122052 13 34128422 to 34128455 33 - TSS region transcription start site region 122052
Cpgi5429 13 34129783 to 34130778 995 CpG island CpG island 5429
Tssr122053 13 34130345 to 34130361 16 - TSS region transcription start site region 122053
Tssr119220 13 34130584 to 34130606 22 + TSS region transcription start site region 119220
Cpgi5430 13 34131459 to 34131752 293 CpG island CpG island 5430
Gm36500 13 34133860 to 34137654 3794 + lincRNA gene predicted gene, 36500
Gm36549 13 34148432 to 34151024 2592 - lncRNA gene predicted gene, 36549
Cpgi5431 13 34162726 to 34163517 791 CpG island CpG island 5431
Tssr119221 13 34162953 to 34163033 80 + TSS region transcription start site region 119221
Psmg4 13 34162964 to 34178172 15208 + protein coding gene proteasome (prosome, macropain) assembly chaperone 4
Tssr119222 13 34163039 to 34163055 16 + TSS region transcription start site region 119222
Slc22a23 13 34179158 to 34345182 166024 - protein coding gene solute carrier family 22, member 23
Tssr122054 13 34182665 to 34182683 18 - TSS region transcription start site region 122054
2900079J23Rik 13 34196632 to 34196883 251 unclassified gene RIKEN cDNA 2900079J23 gene
Tssr122055 13 34246631 to 34246642 11 - TSS region transcription start site region 122055
Tssr122056 13 34246947 to 34246954 7 - TSS region transcription start site region 122056
Gm24530 13 34276965 to 34277252 287 - unclassified non-coding RNA gene predicted gene, 24530
Gm47086 13 34318808 to 34319217 409 + pseudogene predicted gene, 47086
Gm46407 13 34342722 to 34343456 734 + lncRNA gene predicted gene, 46407
Cpgi5432 13 34343772 to 34346023 2251 CpG island CpG island 5432
Tssr122057 13 34345174 to 34345273 99 - TSS region transcription start site region 122057
Tssr122058 13 34345639 to 34345674 35 - TSS region transcription start site region 122058
Tssr122059 13 34345979 to 34346012 33 - TSS region transcription start site region 122059
Tssr4040 13 34355403 to 34355415 12 - TSS region transcription start site region 4040
Gm6129 13 34393724 to 34394524 800 - pseudogene predicted gene 6129
Gm47120 13 34426230 to 34426431 201 - pseudogene predicted gene, 47120
D13Mit241 13 34439478 to 34439590 112 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 241
Gm40908 13 34459557 to 34482181 22624 - lncRNA gene predicted gene, 40908
Gm40909 13 34500728 to 34506511 5783 - lincRNA gene predicted gene, 40909
Gm36758 13 34561986 to 34562295 309 + pseudogene predicted gene, 36758
Gm47127 13 34610827 to 34612246 1419 - lincRNA gene predicted gene, 47127
Tssr4041 13 34627755 to 34627759 4 + TSS region transcription start site region 4041
Pxdc1 13 34627840 to 34653133 25293 - protein coding gene PX domain containing 1
Tssr122060 13 34628318 to 34628325 7 - TSS region transcription start site region 122060
Tssr122061 13 34649471 to 34649474 3 - TSS region transcription start site region 122061
Cpgi5433 13 34651470 to 34653341 1871 CpG island CpG island 5433
Tssr122062 13 34652642 to 34652649 7 - TSS region transcription start site region 122062
Tssr122063 13 34652673 to 34652688 15 - TSS region transcription start site region 122063
Tssr122064 13 34652883 to 34652896 13 - TSS region transcription start site region 122064
Tssr122065 13 34652898 to 34652925 27 - TSS region transcription start site region 122065
Tssr119223 13 34652910 to 34652941 31 + TSS region transcription start site region 119223
Gm15908 13 34652923 to 34666774 13851 + antisense lncRNA gene predicted gene 15908
Tssr122066 13 34652933 to 34652976 43 - TSS region transcription start site region 122066
Tssr122067 13 34653083 to 34653114 31 - TSS region transcription start site region 122067
Gm47149 13 34680733 to 34680921 188 - pseudogene predicted gene, 47149
Gm47150 13 34711449 to 34715030 3581 + lincRNA gene predicted gene, 47150
Tssr122068 13 34715488 to 34715492 4 - TSS region transcription start site region 122068
Gm47151 13 34718056 to 34720751 2695 - lincRNA gene predicted gene, 47151
Gm47152 13 34720682 to 34728661 7979 + lincRNA gene predicted gene, 47152
Tssr119224 13 34734837 to 34734862 25 + TSS region transcription start site region 119224
Fam50b 13 34734850 to 34747623 12773 + protein coding gene family with sequence similarity 50, member B
Tssr119225 13 34734871 to 34734882 11 + TSS region transcription start site region 119225
Tssr119226 13 34739607 to 34739636 29 + TSS region transcription start site region 119226
Cpgi5434 13 34746528 to 34747582 1054 CpG island CpG island 5434
Gm47157 13 34781585 to 34814544 32959 - lincRNA gene predicted gene, 47157
Gm8231 13 34865795 to 34866577 782 - pseudogene predicted gene 8231
Gm36839 13 34873628 to 34875240 1612 - lincRNA gene predicted gene, 36839
Cpgi5435 13 34874087 to 34874580 493 CpG island CpG island 5435
Tssr122069 13 34874396 to 34874450 54 - TSS region transcription start site region 122069
Tssr122070 13 34874456 to 34874469 13 - TSS region transcription start site region 122070
Cpgi5436 13 34875239 to 34876231 992 CpG island CpG island 5436
Prpf4b 13 34875302 to 34906064 30762 + protein coding gene pre-mRNA processing factor 4B
Tssr119227 13 34875488 to 34875515 27 + TSS region transcription start site region 119227
Tssr119228 13 34875520 to 34875562 42 + TSS region transcription start site region 119228
Tssr119229 13 34875563 to 34875602 39 + TSS region transcription start site region 119229
Tssr119230 13 34875603 to 34875604 1 + TSS region transcription start site region 119230
Tssr119231 13 34883225 to 34883250 25 + TSS region transcription start site region 119231
Tssr119232 13 34883587 to 34883600 13 + TSS region transcription start site region 119232
Tssr119233 13 34888151 to 34888164 13 + TSS region transcription start site region 119233
Fam217a 13 34909960 to 34924310 14350 - protein coding gene family with sequence similarity 217, member A
Cpgi5437 13 34916604 to 34917111 507 CpG island CpG island 5437
Tssr122071 13 34916977 to 34917038 61 - TSS region transcription start site region 122071