Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:33127345-34548408

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11384 13 33105539 to 33133493 27954 - pseudogene predicted gene 11384
Gm18708 13 33137574 to 33138240 666 - pseudogene predicted gene, 18708
Tssr4036 13 33139455 to 33139456 1 - TSS region transcription start site region 4036
Serpinb9c 13 33149275 to 33159742 10467 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9c
Tssr122023 13 33158362 to 33158374 12 - TSS region transcription start site region 122023
Tssr122024 13 33158394 to 33158417 23 - TSS region transcription start site region 122024
Tssr122025 13 33159737 to 33159755 18 - TSS region transcription start site region 122025
Tssr119192 13 33192952 to 33192964 12 + TSS region transcription start site region 119192
Serpinb9d 13 33192959 to 33203129 10170 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9d
Gm11385 13 33217268 to 33218151 883 - pseudogene predicted gene 11385
Gm47788 13 33237702 to 33238305 603 + pseudogene predicted gene, 47788
Serpinb9e 13 33249610 to 33260846 11236 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9e
Gm40905 13 33284223 to 33293474 9251 + lncRNA gene predicted gene, 40905
Serpinb9f 13 33324077 to 33335370 11293 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9f
Gm40906 13 33358862 to 33368110 9248 + lncRNA gene predicted gene, 40906
Gm11397 13 33395673 to 33405145 9472 + protein coding gene predicted gene 11397
Gm19155 13 33409104 to 33436782 27678 + pseudogene predicted gene, 19155
Tssr119193 13 33484784 to 33484787 3 + TSS region transcription start site region 119193
Serpinb9g 13 33484790 to 33496002 11212 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9g
Gm11387 13 33508172 to 33526311 18139 + pseudogene predicted gene 11387
Gm11386 13 33531613 to 33531935 322 - pseudogene predicted gene 11386
Gm11393 13 33542999 to 33550698 7699 + pseudogene predicted gene 11393
Tssr122026 13 33559681 to 33559690 9 - TSS region transcription start site region 122026
Gm6093 13 33562486 to 33569317 6831 - lincRNA gene predicted gene 6093
Tssr122027 13 33566242 to 33566252 10 - TSS region transcription start site region 122027
Gm25043 13 33567794 to 33568005 211 + ribozyme gene predicted gene, 25043
Gm47916 13 33569021 to 33572086 3065 + lincRNA gene predicted gene, 47916
Tssr122028 13 33569310 to 33569324 14 - TSS region transcription start site region 122028
Tssr122029 13 33569480 to 33569496 16 - TSS region transcription start site region 122029
Tssr4037 13 33569530 to 33569540 10 - TSS region transcription start site region 4037
Gm5194 13 33596035 to 33596776 741 - pseudogene predicted gene 5194
Gm11388 13 33641625 to 33641783 158 + pseudogene predicted gene 11388
Tssr119194 13 33661402 to 33661406 4 + TSS region transcription start site region 119194
Serpinb6d 13 33661405 to 33671581 10176 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 6d
Gm11389 13 33686457 to 33689508 3051 + pseudogene predicted gene 11389
Gm26701 13 33700473 to 33701102 629 - pseudogene predicted gene, 26701
Gm11392 13 33718276 to 33722055 3779 + pseudogene predicted gene 11392
Gm11394 13 33729051 to 33729861 810 - pseudogene predicted gene 11394
Gm11395 13 33741240 to 33742038 798 + pseudogene predicted gene 11395
Vmn2r-ps94 13 33766992 to 33811610 44618 + pseudogene vomeronasal 2, receptor, pseudogene 94
Serpinb6e 13 33832345 to 33843408 11063 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 6e
Tssr122030 13 33843376 to 33843380 4 - TSS region transcription start site region 122030
Tssr122031 13 33843406 to 33843410 4 - TSS region transcription start site region 122031
Serpinb6c 13 33879816 to 33905708 25892 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 6c
D13Mit136 13 33901015 to 33901109 94 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 136
Tssr122032 13 33905153 to 33905164 11 - TSS region transcription start site region 122032
Tssr122033 13 33905166 to 33905214 48 - TSS region transcription start site region 122033
Tssr122034 13 33905694 to 33905704 10 - TSS region transcription start site region 122034
Tssr122035 13 33905720 to 33905731 11 - TSS region transcription start site region 122035
Serpinb6a 13 33917918 to 34002794 84876 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 6a
Tssr122036 13 33920896 to 33920899 3 - TSS region transcription start site region 122036
Tssr119195 13 33921311 to 33921323 12 + TSS region transcription start site region 119195
Tssr122037 13 33928394 to 33928398 4 - TSS region transcription start site region 122037
Cpgi5425 13 33935452 to 33936076 624 CpG island CpG island 5425
Tssr122038 13 33935700 to 33935724 24 - TSS region transcription start site region 122038
Tssr122039 13 33935758 to 33935769 11 - TSS region transcription start site region 122039
Tssr122040 13 33935782 to 33935832 50 - TSS region transcription start site region 122040
Tssr122041 13 33935833 to 33935861 28 - TSS region transcription start site region 122041
Tssr122042 13 33935969 to 33935986 17 - TSS region transcription start site region 122042
Tssr119196 13 33936027 to 33936075 48 + TSS region transcription start site region 119196
1110046J04Rik 13 33936032 to 33960181 24149 + antisense lncRNA gene RIKEN cDNA 1110046J04 gene
Tssr122043 13 33947691 to 33947695 4 - TSS region transcription start site region 122043
Tssr119197 13 33953202 to 33953215 13 + TSS region transcription start site region 119197
Tssr119198 13 33953231 to 33953242 11 + TSS region transcription start site region 119198
Tssr119199 13 33964663 to 33964674 11 + TSS region transcription start site region 119199
Tssr119200 13 33964684 to 33964704 20 + TSS region transcription start site region 119200
Nqo2 13 33964687 to 33988443 23756 + protein coding gene N-ribosyldihydronicotinamide quinone reductase 2
Tssr119201 13 33964708 to 33964750 42 + TSS region transcription start site region 119201
Tssr119202 13 33964764 to 33964771 7 + TSS region transcription start site region 119202
Tssr119203 13 33964935 to 33964967 32 + TSS region transcription start site region 119203
Tssr122044 13 33965690 to 33965711 21 - TSS region transcription start site region 122044
Tssr122045 13 33965720 to 33965727 7 - TSS region transcription start site region 122045
Tssr119204 13 33967101 to 33967108 7 + TSS region transcription start site region 119204
Tssr122046 13 33967961 to 33967965 4 - TSS region transcription start site region 122046
Tssr119205 13 33979690 to 33979694 4 + TSS region transcription start site region 119205
Tssr4038 13 33985338 to 33985357 19 + TSS region transcription start site region 4038
Cpgi5426 13 34001918 to 34003192 1274 CpG island CpG island 5426
Ripk1 13 34002363 to 34035170 32807 + protein coding gene receptor (TNFRSF)-interacting serine-threonine kinase 1
Tssr119206 13 34002375 to 34002423 48 + TSS region transcription start site region 119206
Tssr119207 13 34002430 to 34002441 11 + TSS region transcription start site region 119207
Tssr122047 13 34002743 to 34002783 40 - TSS region transcription start site region 122047
Tssr122048 13 34002784 to 34002812 28 - TSS region transcription start site region 122048
Gm17083 13 34006966 to 34008331 1365 - pseudogene predicted gene 17083
Tssr119208 13 34010667 to 34010675 8 + TSS region transcription start site region 119208
Tssr119209 13 34021450 to 34021466 16 + TSS region transcription start site region 119209
Tssr119210 13 34021648 to 34021655 7 + TSS region transcription start site region 119210
Gm17084 13 34034526 to 34035036 510 + pseudogene predicted gene 17084
Cpgi5427 13 34037409 to 34037972 563 CpG island CpG island 5427
Tssr119211 13 34037581 to 34037587 6 + TSS region transcription start site region 119211
Tssr119212 13 34037591 to 34037605 14 + TSS region transcription start site region 119212
Bphl 13 34037597 to 34074074 36477 + protein coding gene biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
Tssr119213 13 34037612 to 34037615 3 + TSS region transcription start site region 119213
Tssr119214 13 34037619 to 34037655 36 + TSS region transcription start site region 119214
Tssr119215 13 34037661 to 34037665 4 + TSS region transcription start site region 119215
Tssr119216 13 34037666 to 34037682 16 + TSS region transcription start site region 119216
Tssr4039 13 34046726 to 34046735 9 + TSS region transcription start site region 4039
Tssr119217 13 34046802 to 34046812 10 + TSS region transcription start site region 119217
Tssr119218 13 34046816 to 34046821 5 + TSS region transcription start site region 119218
Tssr122049 13 34050563 to 34050574 11 - TSS region transcription start site region 122049
Tubb2a 13 34074278 to 34078008 3730 - protein coding gene tubulin, beta 2A class IIA
Cpgi5428 13 34077668 to 34078310 642 CpG island CpG island 5428
Tssr122050 13 34077992 to 34078015 23 - TSS region transcription start site region 122050
4930447K03Rik 13 34084155 to 34113272 29117 - lncRNA gene RIKEN cDNA 4930447K03 gene
Gm47065 13 34087137 to 34089027 1890 - pseudogene predicted gene, 47065
Tssr119219 13 34090702 to 34090719 17 + TSS region transcription start site region 119219
Tssr122051 13 34113258 to 34113267 9 - TSS region transcription start site region 122051
Gm47076 13 34119701 to 34122465 2764 + lincRNA gene predicted gene, 47076
Tubb2b 13 34127008 to 34130354 3346 - protein coding gene tubulin, beta 2B class IIB
Tssr122052 13 34128422 to 34128455 33 - TSS region transcription start site region 122052
Cpgi5429 13 34129783 to 34130778 995 CpG island CpG island 5429
Tssr122053 13 34130345 to 34130361 16 - TSS region transcription start site region 122053
Tssr119220 13 34130584 to 34130606 22 + TSS region transcription start site region 119220
Cpgi5430 13 34131459 to 34131752 293 CpG island CpG island 5430
Gm36500 13 34133860 to 34137654 3794 + lincRNA gene predicted gene, 36500
Gm36549 13 34148432 to 34151024 2592 - lncRNA gene predicted gene, 36549
Cpgi5431 13 34162726 to 34163517 791 CpG island CpG island 5431
Tssr119221 13 34162953 to 34163033 80 + TSS region transcription start site region 119221
Psmg4 13 34162964 to 34178172 15208 + protein coding gene proteasome (prosome, macropain) assembly chaperone 4
Tssr119222 13 34163039 to 34163055 16 + TSS region transcription start site region 119222
Slc22a23 13 34179158 to 34345182 166024 - protein coding gene solute carrier family 22, member 23
Tssr122054 13 34182665 to 34182683 18 - TSS region transcription start site region 122054
2900079J23Rik 13 34196632 to 34196883 251 unclassified gene RIKEN cDNA 2900079J23 gene
Tssr122055 13 34246631 to 34246642 11 - TSS region transcription start site region 122055
Tssr122056 13 34246947 to 34246954 7 - TSS region transcription start site region 122056
Gm24530 13 34276965 to 34277252 287 - unclassified non-coding RNA gene predicted gene, 24530
Gm47086 13 34318808 to 34319217 409 + pseudogene predicted gene, 47086
Gm46407 13 34342722 to 34343456 734 + lncRNA gene predicted gene, 46407
Cpgi5432 13 34343772 to 34346023 2251 CpG island CpG island 5432
Tssr122057 13 34345174 to 34345273 99 - TSS region transcription start site region 122057
Tssr122058 13 34345639 to 34345674 35 - TSS region transcription start site region 122058
Tssr122059 13 34345979 to 34346012 33 - TSS region transcription start site region 122059
Tssr4040 13 34355403 to 34355415 12 - TSS region transcription start site region 4040
Gm6129 13 34393724 to 34394524 800 - pseudogene predicted gene 6129
Gm47120 13 34426230 to 34426431 201 - pseudogene predicted gene, 47120
D13Mit241 13 34439478 to 34439590 112 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 241
Gm40908 13 34459557 to 34482181 22624 - lncRNA gene predicted gene, 40908
Gm40909 13 34500728 to 34506511 5783 - lincRNA gene predicted gene, 40909