Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:3180683-3542290

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26 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Speer6-ps1 13 3149475 to 3189678 40203 + pseudogene spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1
Gm40648 13 3202644 to 3216688 14044 - lncRNA gene predicted gene, 40648
Gm35043 13 3267594 to 3358601 91007 - lncRNA gene predicted gene, 35043
Gm40653 13 3276850 to 3282376 5526 + lincRNA gene predicted gene, 40653
Tssr118193 13 3298864 to 3298875 11 + TSS region transcription start site region 118193
Gm9616 13 3298887 to 3299667 780 + pseudogene predicted gene 9616
Gm48530 13 3325296 to 3358455 33159 - lincRNA gene predicted gene, 48530
Gm8616 13 3352952 to 3353988 1036 + pseudogene predicted gene 8616
Cpgi5240 13 3358210 to 3360229 2019 CpG island CpG island 5240
Gm16505 13 3358273 to 3363862 5589 + protein coding gene predicted gene 16505
Cpgi5241 13 3360506 to 3361411 905 CpG island CpG island 5241
Cpgi5242 13 3372913 to 3373551 638 CpG island CpG island 5242
Gm19163 13 3456991 to 3457770 779 - pseudogene predicted gene, 19163
Cpgi5243 13 3457408 to 3457618 210 CpG island CpG island 5243
Cpgi5244 13 3478077 to 3478689 612 CpG island CpG island 5244
Tssr118194 13 3478226 to 3478269 43 + TSS region transcription start site region 118194
2810429I04Rik 13 3498050 to 3501393 3343 + lincRNA gene RIKEN cDNA 2810429I04 gene
Gm40654 13 3514471 to 3519532 5061 - lncRNA gene predicted gene, 40654
Cpgi5245 13 3537521 to 3538904 1383 CpG island CpG island 5245
Tssr121275 13 3537664 to 3537667 3 - TSS region transcription start site region 121275
Gdi2 13 3538075 to 3566261 28186 + protein coding gene guanosine diphosphate (GDP) dissociation inhibitor 2
Tssr118195 13 3538111 to 3538150 39 + TSS region transcription start site region 118195
Tssr118196 13 3538439 to 3538461 22 + TSS region transcription start site region 118196
Tssr118197 13 3538478 to 3538484 6 + TSS region transcription start site region 118197
Tssr118198 13 3538614 to 3538635 21 + TSS region transcription start site region 118198
Tssr118199 13 3541810 to 3541814 4 + TSS region transcription start site region 118199