Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:3169686-4679713

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Speer6-ps1 13 3149475 to 3189678 40203 + pseudogene spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1
Gm40644 13 3149559 to 3169709 20150 - lncRNA gene predicted gene, 40644
Tssr121274 13 3170797 to 3170804 7 - TSS region transcription start site region 121274
Gm40648 13 3202644 to 3216688 14044 - lncRNA gene predicted gene, 40648
Gm35043 13 3267594 to 3358601 91007 - lncRNA gene predicted gene, 35043
Gm40653 13 3276850 to 3282376 5526 + lincRNA gene predicted gene, 40653
Tssr118193 13 3298864 to 3298875 11 + TSS region transcription start site region 118193
Gm9616 13 3298887 to 3299667 780 + pseudogene predicted gene 9616
Gm48530 13 3325296 to 3358455 33159 - lincRNA gene predicted gene, 48530
Gm8616 13 3352952 to 3353988 1036 + pseudogene predicted gene 8616
Cpgi5240 13 3358210 to 3360229 2019 CpG island CpG island 5240
Gm16505 13 3358273 to 3363862 5589 + protein coding gene predicted gene 16505
Cpgi5241 13 3360506 to 3361411 905 CpG island CpG island 5241
Cpgi5242 13 3372913 to 3373551 638 CpG island CpG island 5242
Gm19163 13 3456991 to 3457770 779 - pseudogene predicted gene, 19163
Cpgi5243 13 3457408 to 3457618 210 CpG island CpG island 5243
Cpgi5244 13 3478077 to 3478689 612 CpG island CpG island 5244
Tssr118194 13 3478226 to 3478269 43 + TSS region transcription start site region 118194
2810429I04Rik 13 3498050 to 3501393 3343 + lincRNA gene RIKEN cDNA 2810429I04 gene
Gm40654 13 3514471 to 3519532 5061 - lncRNA gene predicted gene, 40654
Cpgi5245 13 3537521 to 3538904 1383 CpG island CpG island 5245
Tssr121275 13 3537664 to 3537667 3 - TSS region transcription start site region 121275
Gdi2 13 3538075 to 3566261 28186 + protein coding gene guanosine diphosphate (GDP) dissociation inhibitor 2
Tssr118195 13 3538111 to 3538150 39 + TSS region transcription start site region 118195
Tssr118196 13 3538439 to 3538461 22 + TSS region transcription start site region 118196
Tssr118197 13 3538478 to 3538484 6 + TSS region transcription start site region 118197
Tssr118198 13 3538614 to 3538635 21 + TSS region transcription start site region 118198
Tssr118199 13 3541810 to 3541814 4 + TSS region transcription start site region 118199
Tssr118200 13 3548886 to 3548926 40 + TSS region transcription start site region 118200
Tssr118201 13 3556971 to 3557018 47 + TSS region transcription start site region 118201
Gm48838 13 3562385 to 3563618 1233 + unclassified gene predicted gene, 48838
Tssr118202 13 3563901 to 3563909 8 + TSS region transcription start site region 118202
Tssr118203 13 3564987 to 3565019 32 + TSS region transcription start site region 118203
Tasor2 13 3566035 to 3611108 45073 - protein coding gene transcription activation suppressor family member 2
Tssr121276 13 3601458 to 3601471 13 - TSS region transcription start site region 121276
Tssr121277 13 3601482 to 3601494 12 - TSS region transcription start site region 121277
Cpgi5246 13 3610128 to 3611345 1217 CpG island CpG island 5246
Tssr121278 13 3610265 to 3610270 5 - TSS region transcription start site region 121278
Tssr121279 13 3610281 to 3610300 19 - TSS region transcription start site region 121279
Tssr121280 13 3610982 to 3610998 16 - TSS region transcription start site region 121280
Tssr121281 13 3611002 to 3611013 11 - TSS region transcription start site region 121281
Tssr121282 13 3611017 to 3611034 17 - TSS region transcription start site region 121282
Tssr121283 13 3611036 to 3611062 26 - TSS region transcription start site region 121283
Tssr121284 13 3611064 to 3611118 54 - TSS region transcription start site region 121284
Tssr121285 13 3611134 to 3611147 13 - TSS region transcription start site region 121285
Tssr121286 13 3611189 to 3611210 21 - TSS region transcription start site region 121286
Tssr118204 13 3611324 to 3611350 26 + TSS region transcription start site region 118204
Gm20277 13 3612848 to 3613774 926 + pseudogene predicted gene, 20277
Cpgi5247 13 3633786 to 3634509 723 CpG island CpG island 5247
Tssr118205 13 3634012 to 3634027 15 + TSS region transcription start site region 118205
Asb13 13 3634013 to 3651779 17766 + protein coding gene ankyrin repeat and SOCS box-containing 13
Tssr118206 13 3634034 to 3634108 74 + TSS region transcription start site region 118206
Gm23084 13 3648537 to 3648650 113 + rRNA gene predicted gene, 23084
Tssr118207 13 3652777 to 3652783 6 + TSS region transcription start site region 118207
Cpgi5248 13 3653435 to 3653614 179 CpG island CpG island 5248
Gm47695 13 3759825 to 3781203 21378 + lincRNA gene predicted gene, 47695
Gm35190 13 3762282 to 3766722 4440 - lincRNA gene predicted gene, 35190
Tssr121287 13 3767166 to 3767181 15 - TSS region transcription start site region 121287
Calml3 13 3802896 to 3804316 1420 - protein coding gene calmodulin-like 3
Tssr121288 13 3803285 to 3803291 6 - TSS region transcription start site region 121288
Cpgi5249 13 3803789 to 3804030 241 CpG island CpG island 5249
Tssr121289 13 3804214 to 3804239 25 - TSS region transcription start site region 121289
Tssr121290 13 3804307 to 3804337 30 - TSS region transcription start site region 121290
Gm40655 13 3825519 to 3836003 10484 + sense overlapping lncRNA gene predicted gene, 40655
Calm4 13 3837757 to 3838671 914 + protein coding gene calmodulin 4
Calm5 13 3854173 to 3854761 588 + protein coding gene calmodulin 5
Net1 13 3882018 to 3918220 36202 - protein coding gene neuroepithelial cell transforming gene 1
Cpgi5250 13 3893329 to 3893703 374 CpG island CpG island 5250
Tssr121291 13 3893506 to 3893553 47 - TSS region transcription start site region 121291
Tssr121292 13 3893556 to 3893589 33 - TSS region transcription start site region 121292
Tssr121293 13 3894295 to 3894300 5 - TSS region transcription start site region 121293
Gm47813 13 3899209 to 3900248 1039 - unclassified gene predicted gene, 47813
Tssr121294 13 3910492 to 3910496 4 - TSS region transcription start site region 121294
Cpgi5251 13 3917603 to 3918274 671 CpG island CpG island 5251
Tssr121295 13 3918144 to 3918151 7 - TSS region transcription start site region 121295
Tssr121296 13 3918157 to 3918219 62 - TSS region transcription start site region 121296
Tubal3 13 3924635 to 3935277 10642 + protein coding gene tubulin, alpha-like 3
Tssr118208 13 3924671 to 3924684 13 + TSS region transcription start site region 118208
Tssr118209 13 3924686 to 3924713 27 + TSS region transcription start site region 118209
Ucn3 13 3940688 to 3945349 4661 - protein coding gene urocortin 3
Gm22460 13 3957119 to 3957242 123 - miRNA gene predicted gene, 22460
Tssr118210 13 3995361 to 3995365 4 + TSS region transcription start site region 118210
Gm47853 13 4023169 to 4025827 2658 + pseudogene predicted gene, 47853
Gm18857 13 4037952 to 4041308 3356 + pseudogene predicted gene, 18857
Tssr118211 13 4048972 to 4048983 11 + TSS region transcription start site region 118211
Tssr118212 13 4049001 to 4049030 29 + TSS region transcription start site region 118212
Tssr118213 13 4049040 to 4049043 3 + TSS region transcription start site region 118213
Tssr118214 13 4059565 to 4059586 21 + TSS region transcription start site region 118214
Tssr118215 13 4059587 to 4059600 13 + TSS region transcription start site region 118215
Akr1c14 13 4059591 to 4090422 30831 + protein coding gene aldo-keto reductase family 1, member C14
Tssr118216 13 4059671 to 4059672 1 + TSS region transcription start site region 118216
Gm47904 13 4091286 to 4092636 1350 + lincRNA gene predicted gene, 47904
Gm47905 13 4097498 to 4100831 3333 + unclassified gene predicted gene, 47905
Akr1c18 13 4132615 to 4150651 18036 - protein coding gene aldo-keto reductase family 1, member C18
Tssr121297 13 4150633 to 4150653 20 - TSS region transcription start site region 121297
Tssr121298 13 4150659 to 4150673 14 - TSS region transcription start site region 121298
Gm47925 13 4166503 to 4172845 6342 + lincRNA gene predicted gene, 47925
Gm2123 13 4168646 to 4170980 2334 - pseudogene predicted gene 2123
Tssr118217 13 4191163 to 4191200 37 + TSS region transcription start site region 118217
Akr1c13 13 4191166 to 4205604 14438 + protein coding gene aldo-keto reductase family 1, member C13
Tssr118218 13 4191208 to 4191226 18 + TSS region transcription start site region 118218
Tssr118219 13 4191228 to 4191242 14 + TSS region transcription start site region 118219
D13Mit235 13 4220992 to 4221137 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 235
n-TKctt6 13 4224148 to 4224220 72 - tRNA gene nuclear encoded tRNA lysine 6 (anticodon CTT)
Tssr118220 13 4228682 to 4228727 45 + TSS region transcription start site region 118220
Akr1c19 13 4233503 to 4248361 14858 + protein coding gene aldo-keto reductase family 1, member C19
Tssr118221 13 4233730 to 4233758 28 + TSS region transcription start site region 118221
Tssr118222 13 4233786 to 4233797 11 + TSS region transcription start site region 118222
Marcksl1-ps4 13 4248735 to 4249025 290 + pseudogene MARCKS-like 1, pseudogene 4
Tssr118223 13 4249705 to 4249709 4 + TSS region transcription start site region 118223
Gm40656 13 4255171 to 4258461 3290 + lncRNA gene predicted gene, 40656
Akr1c12 13 4268172 to 4279399 11227 - protein coding gene aldo-keto reductase family 1, member C12
Tssr121299 13 4279336 to 4279353 17 - TSS region transcription start site region 121299
Tssr121300 13 4279357 to 4279373 16 - TSS region transcription start site region 121300
Tssr121301 13 4279390 to 4279409 19 - TSS region transcription start site region 121301
Tssr121302 13 4279420 to 4279450 30 - TSS region transcription start site region 121302
Hpi1 13 4364026 to 52947604 48583578 QTL hapatic PMN infiltration 1
D13Mit236 13 4364026 to 4364122 96 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 236
Gm9973 13 4364550 to 4391259 26709 - lncRNA gene predicted gene 9973
Gm47951 13 4368681 to 4372417 3736 + pseudogene predicted gene, 47951
Tssr121303 13 4391236 to 4391249 13 - TSS region transcription start site region 121303
Akr1c6 13 4434311 to 4457530 23219 + protein coding gene aldo-keto reductase family 1, member C6
Tssr118224 13 4434337 to 4434388 51 + TSS region transcription start site region 118224
Tssr118225 13 4436094 to 4436132 38 + TSS region transcription start site region 118225
Tssr118226 13 4439400 to 4439408 8 + TSS region transcription start site region 118226
Gm48010 13 4465680 to 4466566 886 - lincRNA gene predicted gene, 48010
Akr1c20 13 4486849 to 4523345 36496 - protein coding gene aldo-keto reductase family 1, member C20
Tssr121304 13 4523322 to 4523355 33 - TSS region transcription start site region 121304
Gm40657 13 4555411 to 4565781 10370 - lncRNA gene predicted gene, 40657
Tssr118227 13 4574075 to 4574088 13 + TSS region transcription start site region 118227
Akr1c21 13 4574075 to 4586541 12466 + protein coding gene aldo-keto reductase family 1, member C21
Akr1e1 13 4592490 to 4609164 16674 - protein coding gene aldo-keto reductase family 1, member E1
Tssr121305 13 4609122 to 4609189 67 - TSS region transcription start site region 121305
Tssr118228 13 4614126 to 4614127 1 + TSS region transcription start site region 118228
Rpl29-ps2 13 4614127 to 4614793 666 + pseudogene ribosomal protein L29, pseudogene 2