Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:31625924-34405937

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301 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5417 13 31624958 to 31627327 2369 CpG island CpG island 5417
Foxf2 13 31625816 to 31631403 5587 + protein coding gene forkhead box F2
Gm27516 13 31626446 to 31626543 97 - miRNA gene predicted gene, 27516
Cpgi5418 13 31628993 to 31630155 1162 CpG island CpG island 5418
D13Cwr30 13 31632616 to 31632723 107 DNA segment DNA segment, Chr. 13, Case Western Reserve 30
Tssr121990 13 31674435 to 31674441 6 - TSS region transcription start site region 121990
Tssr121991 13 31681455 to 31681482 27 - TSS region transcription start site region 121991
Gm25186 13 31737633 to 31737740 107 - snRNA gene predicted gene, 25186
D13Cwr27 13 31758521 to 31758642 121 DNA segment DNA segment, Chr. 13, Case Western Reserve 27
Tssr119133 13 31785112 to 31785120 8 + TSS region transcription start site region 119133
Tssr119134 13 31785133 to 31785145 12 + TSS region transcription start site region 119134
Tssr119135 13 31785223 to 31785232 9 + TSS region transcription start site region 119135
Tssr119136 13 31785243 to 31785253 10 + TSS region transcription start site region 119136
Tssr119137 13 31785258 to 31785270 12 + TSS region transcription start site region 119137
D13Cwr26 13 31792482 to 31792666 184 DNA segment DNA segment, Chr. 13, Case Western Reserve 26
Gm11379 13 31797539 to 31800789 3250 + antisense lncRNA gene predicted gene 11379
Cpgi5419 13 31801216 to 31802341 1125 CpG island CpG island 5419
D13Cwr25 13 31803238 to 31803389 151 DNA segment DNA segment, Chr. 13, Case Western Reserve 25
Tssr119138 13 31803849 to 31803853 4 + TSS region transcription start site region 119138
Cpgi5420 13 31805893 to 31808919 3026 CpG island CpG island 5420
Tssr119139 13 31806627 to 31806650 23 + TSS region transcription start site region 119139
Foxc1 13 31806646 to 31810635 3989 + protein coding gene forkhead box C1
Tssr119140 13 31806660 to 31806673 13 + TSS region transcription start site region 119140
Tssr119141 13 31806768 to 31806784 16 + TSS region transcription start site region 119141
Tssr119142 13 31806860 to 31806892 32 + TSS region transcription start site region 119142
Tssr119143 13 31806898 to 31806916 18 + TSS region transcription start site region 119143
Tssr119144 13 31806995 to 31807005 10 + TSS region transcription start site region 119144
Tssr119145 13 31807392 to 31807410 18 + TSS region transcription start site region 119145
Tssr119146 13 31808833 to 31808848 15 + TSS region transcription start site region 119146
D13Cwr24 13 31809617 to 31809840 223 DNA segment DNA segment, Chr. 13, Case Western Reserve 24
Cpgi5421 13 31810564 to 31812079 1515 CpG island CpG island 5421
4930548F15Rik 13 31811161 to 31812475 1314 unclassified gene RIKEN cDNA 4930548F15 gene
D13Cwr23 13 31817332 to 31817640 308 DNA segment DNA segment, Chr. 13, Case Western Reserve 23
Gmds 13 31819583 to 32338725 519142 - protein coding gene GDP-mannose 4, 6-dehydratase
Tssr119147 13 31820063 to 31820068 5 + TSS region transcription start site region 119147
Tssr121992 13 31820587 to 31820620 33 - TSS region transcription start site region 121992
Gm48883 13 31832905 to 31834736 1831 - unclassified gene predicted gene, 48883
D13Cwr22 13 31856149 to 31856298 149 DNA segment DNA segment, Chr. 13, Case Western Reserve 22
D13Cwr21 13 31873413 to 31873664 251 DNA segment DNA segment, Chr. 13, Case Western Reserve 21
D13Mit294 13 31874204 to 31874305 101 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 294
Tssr119148 13 31884187 to 31884200 13 + TSS region transcription start site region 119148
Gm11380 13 31884225 to 31885224 999 + pseudogene predicted gene 11380
D13Cwr20 13 31891937 to 31892154 217 DNA segment DNA segment, Chr. 13, Case Western Reserve 20
Tssr119149 13 31899623 to 31899632 9 + TSS region transcription start site region 119149
D13Cwr19 13 31911116 to 31911243 127 DNA segment DNA segment, Chr. 13, Case Western Reserve 19
D13Cwr18 13 31912182 to 31912436 254 DNA segment DNA segment, Chr. 13, Case Western Reserve 18
D13Cwr17 13 31919508 to 31919662 154 DNA segment DNA segment, Chr. 13, Case Western Reserve 17
D13Cwr16 13 31958217 to 31958366 149 DNA segment DNA segment, Chr. 13, Case Western Reserve 16
Gm35732 13 31971086 to 31972329 1243 + antisense lncRNA gene predicted gene, 35732
9130221L21Rik 13 31976647 to 31979257 2610 unclassified gene RIKEN cDNA 9130221L21 gene
Tssr121993 13 31984823 to 31984827 4 - TSS region transcription start site region 121993
Gm35672 13 32007295 to 32092787 85492 + lncRNA gene predicted gene, 35672
D13Cwr15 13 32013512 to 32013704 192 DNA segment DNA segment, Chr. 13, Case Western Reserve 15
D13Cwr12 13 32067534 to 32067711 177 DNA segment DNA segment, Chr. 13, Case Western Reserve 12
Gm48885 13 32095279 to 32099175 3896 - unclassified gene predicted gene, 48885
Tssr121994 13 32214100 to 32214127 27 - TSS region transcription start site region 121994
Tssr4034 13 32214147 to 32214152 5 - TSS region transcription start site region 4034
Cpgi5422 13 32337948 to 32338955 1007 CpG island CpG island 5422
Tssr121995 13 32338500 to 32338542 42 - TSS region transcription start site region 121995
Tssr121996 13 32338554 to 32338564 10 - TSS region transcription start site region 121996
Tssr121997 13 32338565 to 32338660 95 - TSS region transcription start site region 121997
A730091E23Rik 13 32338819 to 32342643 3824 + unclassified gene RIKEN cDNA A730091E23 gene
Gm11381 13 32379907 to 32383688 3781 - lincRNA gene predicted gene 11381
D13Cwr11 13 32425183 to 32425291 108 DNA segment DNA segment, Chr. 13, Case Western Reserve 11
Tssr119150 13 32465446 to 32465460 14 + TSS region transcription start site region 119150
Gm40876 13 32465453 to 32493376 27923 + lncRNA gene predicted gene, 40876
D13Cwr10 13 32494253 to 32494406 153 DNA segment DNA segment, Chr. 13, Case Western Reserve 10
D13Cwr9 13 32513012 to 32513205 193 DNA segment DNA segment, Chr. 13, Case Western Reserve 9
Gm48073 13 32532919 to 32536415 3496 - lincRNA gene predicted gene, 48073
D13Cwr8 13 32536279 to 32536375 96 DNA segment DNA segment, Chr. 13, Case Western Reserve 8
D13Cwr7 13 32536706 to 32536889 183 DNA segment DNA segment, Chr. 13, Case Western Reserve 7
D13Cwr6 13 32554180 to 32554394 214 DNA segment DNA segment, Chr. 13, Case Western Reserve 6
D13Cwr5 13 32607337 to 32607580 243 DNA segment DNA segment, Chr. 13, Case Western Reserve 5
D13Cwr4 13 32611098 to 32611327 229 DNA segment DNA segment, Chr. 13, Case Western Reserve 4
D13Mit307 13 32655602 to 32655706 104 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 307
D13Cwr3 13 32674056 to 32674239 183 DNA segment DNA segment, Chr. 13, Case Western Reserve 3
Mylk4 13 32700834 to 32783954 83120 - protein coding gene myosin light chain kinase family, member 4
Tssr121998 13 32701707 to 32701726 19 - TSS region transcription start site region 121998
D13Cwr2 13 32702775 to 32702918 143 DNA segment DNA segment, Chr. 13, Case Western Reserve 2
Tssr121999 13 32703489 to 32703515 26 - TSS region transcription start site region 121999
2310045N14Rik 13 32725850 to 32726971 1121 unclassified gene RIKEN cDNA 2310045N14 gene
Gm27342 13 32758202 to 32758310 108 + snRNA gene predicted gene, 27342
D13Mit265 13 32770541 to 32770650 109 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 265
Cpgi5423 13 32776171 to 32776448 277 CpG island CpG island 5423
Tssr122000 13 32776396 to 32776425 29 - TSS region transcription start site region 122000
Tssr122001 13 32776435 to 32776446 11 - TSS region transcription start site region 122001
Tssr122002 13 32776464 to 32776477 13 - TSS region transcription start site region 122002
Tssr122003 13 32776543 to 32776558 15 - TSS region transcription start site region 122003
Tssr122004 13 32783903 to 32783914 11 - TSS region transcription start site region 122004
Tssr122005 13 32783917 to 32783929 12 - TSS region transcription start site region 122005
Tssr122006 13 32783934 to 32783946 12 - TSS region transcription start site region 122006
Tssr122007 13 32783957 to 32783975 18 - TSS region transcription start site region 122007
Tssr122008 13 32783994 to 32784007 13 - TSS region transcription start site region 122008
Tssr122009 13 32784025 to 32784042 17 - TSS region transcription start site region 122009
D13Cwr1 13 32794840 to 32795073 233 DNA segment DNA segment, Chr. 13, Case Western Reserve 1
Cpgi5424 13 32801702 to 32803248 1546 CpG island CpG island 5424
Tssr119151 13 32802007 to 32802152 145 + TSS region transcription start site region 119151
Wrnip1 13 32802038 to 32822609 20571 + protein coding gene Werner helicase interacting protein 1
D930007J09Rik 13 32802457 to 32802849 392 - protein coding gene RIKEN cDNA D930007J09 gene
Tssr122010 13 32806960 to 32806978 18 - TSS region transcription start site region 122010
Tssr122011 13 32806984 to 32807020 36 - TSS region transcription start site region 122011
Serpinb1a 13 32842092 to 32851185 9093 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 1a
Tssr122012 13 32845805 to 32845816 11 - TSS region transcription start site region 122012
Tssr122013 13 32851176 to 32851186 10 - TSS region transcription start site region 122013
Serpinb1-ps1 13 32859959 to 32863170 3211 - pseudogene serine (or cysteine) peptidase inhibitor, clade B, member 1, pseudogene
Tssr119152 13 32860960 to 32860967 7 + TSS region transcription start site region 119152
Tssr119153 13 32861009 to 32861021 12 + TSS region transcription start site region 119153
Gm35899 13 32865053 to 32870912 5859 + lncRNA gene predicted gene, 35899
Serpinb1c 13 32881434 to 32898211 16777 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 1c
Tssr122014 13 32898147 to 32898160 13 - TSS region transcription start site region 122014
Gm18311 13 32923221 to 32924494 1273 - pseudogene predicted gene, 18311
Tssr122015 13 32932415 to 32932439 24 - TSS region transcription start site region 122015
Gm11382 13 32938513 to 32938691 178 - pseudogene predicted pseudogene 11382
Tssr122016 13 32939319 to 32939330 11 - TSS region transcription start site region 122016
Tssr122017 13 32940586 to 32940622 36 - TSS region transcription start site region 122017
Tssr122018 13 32940625 to 32940638 13 - TSS region transcription start site region 122018
Tssr119154 13 32956783 to 32956816 33 + TSS region transcription start site region 119154
Tssr122019 13 32964052 to 32964062 10 - TSS region transcription start site region 122019
Serpinb6b 13 32965209 to 32979067 13858 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 6b
Tssr119155 13 32965254 to 32965267 13 + TSS region transcription start site region 119155
Tssr119156 13 32965272 to 32965283 11 + TSS region transcription start site region 119156
Tssr119157 13 32965303 to 32965317 14 + TSS region transcription start site region 119157
Tssr119158 13 32965323 to 32965330 7 + TSS region transcription start site region 119158
Tssr119159 13 32965494 to 32965511 17 + TSS region transcription start site region 119159
Tssr119160 13 32965693 to 32965712 19 + TSS region transcription start site region 119160
Tssr119161 13 32996969 to 32996989 20 + TSS region transcription start site region 119161
Tssr119162 13 32996998 to 32997011 13 + TSS region transcription start site region 119162
Gm47662 13 32997062 to 33001750 4688 + lincRNA gene predicted gene, 47662
Gm36181 13 33000998 to 33006525 5527 - lncRNA gene predicted gene, 36181
Tssr119163 13 33002040 to 33002068 28 + TSS region transcription start site region 119163
Tssr119164 13 33003158 to 33003178 20 + TSS region transcription start site region 119164
Tssr119165 13 33003222 to 33003257 35 + TSS region transcription start site region 119165
Serpinb9 13 33003250 to 33017957 14707 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9
Tssr119166 13 33003456 to 33003471 15 + TSS region transcription start site region 119166
Tssr119167 13 33004158 to 33004161 3 + TSS region transcription start site region 119167
Tssr119168 13 33004528 to 33004553 25 + TSS region transcription start site region 119168
Tssr119169 13 33004563 to 33004578 15 + TSS region transcription start site region 119169
Tssr119170 13 33004596 to 33004609 13 + TSS region transcription start site region 119170
Tssr119171 13 33004620 to 33004640 20 + TSS region transcription start site region 119171
Tssr119172 13 33013922 to 33013947 25 + TSS region transcription start site region 119172
Tssr119173 13 33015924 to 33015937 13 + TSS region transcription start site region 119173
Tssr119174 13 33016145 to 33016163 18 + TSS region transcription start site region 119174
Tssr119175 13 33016184 to 33016232 48 + TSS region transcription start site region 119175
Tssr119176 13 33017125 to 33017135 10 + TSS region transcription start site region 119176
Tssr119177 13 33027408 to 33027419 11 + TSS region transcription start site region 119177
Serpinb9b 13 33027414 to 33040559 13145 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9b
Tssr119178 13 33027502 to 33027513 11 + TSS region transcription start site region 119178
Tssr119179 13 33027532 to 33027547 15 + TSS region transcription start site region 119179
Gm36099 13 33031202 to 33034560 3358 - antisense lncRNA gene predicted gene, 36099
Tssr122020 13 33034632 to 33034648 16 - TSS region transcription start site region 122020
Tssr122021 13 33034651 to 33034663 12 - TSS region transcription start site region 122021
Tssr119180 13 33039828 to 33039842 14 + TSS region transcription start site region 119180
Tssr119181 13 33039898 to 33039917 19 + TSS region transcription start site region 119181
Tssr119182 13 33039945 to 33039954 9 + TSS region transcription start site region 119182
Tssr119183 13 33039971 to 33040005 34 + TSS region transcription start site region 119183
Tssr122022 13 33040032 to 33040043 11 - TSS region transcription start site region 122022
Tssr119184 13 33040056 to 33040074 18 + TSS region transcription start site region 119184
Tssr119185 13 33040260 to 33040297 37 + TSS region transcription start site region 119185
Tssr119186 13 33040361 to 33040371 10 + TSS region transcription start site region 119186
Tssr119187 13 33041003 to 33041009 6 + TSS region transcription start site region 119187
Gm18316 13 33065295 to 33066815 1520 + pseudogene predicted gene, 18316
Tssr4035 13 33078510 to 33078523 13 + TSS region transcription start site region 4035
Serpinb1b 13 33078575 to 33094380 15805 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 1b
Tssr119188 13 33084049 to 33084058 9 + TSS region transcription start site region 119188
Tssr119189 13 33084061 to 33084072 11 + TSS region transcription start site region 119189
Tssr119190 13 33084095 to 33084104 9 + TSS region transcription start site region 119190
Tssr119191 13 33084113 to 33084146 33 + TSS region transcription start site region 119191
Gm11384 13 33105539 to 33133493 27954 - pseudogene predicted gene 11384
Gm11383 13 33120519 to 33121322 803 - pseudogene predicted gene 11383
Gm18708 13 33137574 to 33138240 666 - pseudogene predicted gene, 18708
Tssr4036 13 33139455 to 33139456 1 - TSS region transcription start site region 4036
Serpinb9c 13 33149275 to 33159742 10467 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9c
Tssr122023 13 33158362 to 33158374 12 - TSS region transcription start site region 122023
Tssr122024 13 33158394 to 33158417 23 - TSS region transcription start site region 122024
Tssr122025 13 33159737 to 33159755 18 - TSS region transcription start site region 122025
Tssr119192 13 33192952 to 33192964 12 + TSS region transcription start site region 119192
Serpinb9d 13 33192959 to 33203129 10170 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9d
Gm11385 13 33217268 to 33218151 883 - pseudogene predicted gene 11385
Gm47788 13 33237702 to 33238305 603 + pseudogene predicted gene, 47788
Serpinb9e 13 33249610 to 33260846 11236 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9e
Gm40905 13 33284223 to 33293474 9251 + lncRNA gene predicted gene, 40905
Serpinb9f 13 33324077 to 33335370 11293 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9f
Gm40906 13 33358862 to 33368110 9248 + lncRNA gene predicted gene, 40906
Gm11397 13 33395673 to 33405145 9472 + protein coding gene predicted gene 11397
Gm19155 13 33409104 to 33436782 27678 + pseudogene predicted gene, 19155
Tssr119193 13 33484784 to 33484787 3 + TSS region transcription start site region 119193
Serpinb9g 13 33484790 to 33496002 11212 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9g
Gm11387 13 33508172 to 33526311 18139 + pseudogene predicted gene 11387
Gm11386 13 33531613 to 33531935 322 - pseudogene predicted gene 11386
Gm11393 13 33542999 to 33550698 7699 + pseudogene predicted gene 11393
Tssr122026 13 33559681 to 33559690 9 - TSS region transcription start site region 122026
Gm6093 13 33562486 to 33569317 6831 - lincRNA gene predicted gene 6093
Tssr122027 13 33566242 to 33566252 10 - TSS region transcription start site region 122027
Gm25043 13 33567794 to 33568005 211 + ribozyme gene predicted gene, 25043
Gm47916 13 33569021 to 33572086 3065 + lincRNA gene predicted gene, 47916
Tssr122028 13 33569310 to 33569324 14 - TSS region transcription start site region 122028
Tssr122029 13 33569480 to 33569496 16 - TSS region transcription start site region 122029
Tssr4037 13 33569530 to 33569540 10 - TSS region transcription start site region 4037
Gm5194 13 33596035 to 33596776 741 - pseudogene predicted gene 5194
Gm11388 13 33641625 to 33641783 158 + pseudogene predicted gene 11388