Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:31559583-32598725

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5413 13 31557501 to 31560221 2720 CpG island CpG island 5413
Foxq1 13 31558170 to 31560976 2806 + protein coding gene forkhead box Q1
Gm11377 13 31564749 to 31573562 8813 + lincRNA gene predicted gene 11377
1700018A04Rik 13 31565492 to 31582513 17021 - lincRNA gene RIKEN cDNA 1700018A04 gene
Tssr121988 13 31582499 to 31582518 19 - TSS region transcription start site region 121988
D13Dcr2 13 31610551 to 31610646 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 2
Cpgi5414 13 31614698 to 31615480 782 CpG island CpG island 5414
Cpgi5415 13 31619071 to 31619313 242 CpG island CpG island 5415
Gm11378 13 31619168 to 31620369 1201 + lincRNA gene predicted gene 11378
Cpgi5416 13 31620138 to 31620739 601 CpG island CpG island 5416
Cpgi5417 13 31624958 to 31627327 2369 CpG island CpG island 5417
Tssr4033 13 31625485 to 31625498 13 - TSS region transcription start site region 4033
Tssr121989 13 31625549 to 31625564 15 - TSS region transcription start site region 121989
Tssr119127 13 31625679 to 31625727 48 + TSS region transcription start site region 119127
Tssr119128 13 31625728 to 31625744 16 + TSS region transcription start site region 119128
Tssr119129 13 31625745 to 31625759 14 + TSS region transcription start site region 119129
Tssr119130 13 31625793 to 31625800 7 + TSS region transcription start site region 119130
Tssr119131 13 31625802 to 31625813 11 + TSS region transcription start site region 119131
Foxf2 13 31625816 to 31631403 5587 + protein coding gene forkhead box F2
Tssr119132 13 31625906 to 31625919 13 + TSS region transcription start site region 119132
Gm27516 13 31626446 to 31626543 97 - miRNA gene predicted gene, 27516
Cpgi5418 13 31628993 to 31630155 1162 CpG island CpG island 5418
D13Cwr30 13 31632616 to 31632723 107 DNA segment DNA segment, Chr. 13, Case Western Reserve 30
Tssr121990 13 31674435 to 31674441 6 - TSS region transcription start site region 121990
Tssr121991 13 31681455 to 31681482 27 - TSS region transcription start site region 121991
Gm25186 13 31737633 to 31737740 107 - snRNA gene predicted gene, 25186
D13Cwr27 13 31758521 to 31758642 121 DNA segment DNA segment, Chr. 13, Case Western Reserve 27
Tssr119133 13 31785112 to 31785120 8 + TSS region transcription start site region 119133
Tssr119134 13 31785133 to 31785145 12 + TSS region transcription start site region 119134
Tssr119135 13 31785223 to 31785232 9 + TSS region transcription start site region 119135
Tssr119136 13 31785243 to 31785253 10 + TSS region transcription start site region 119136
Tssr119137 13 31785258 to 31785270 12 + TSS region transcription start site region 119137
D13Cwr26 13 31792482 to 31792666 184 DNA segment DNA segment, Chr. 13, Case Western Reserve 26
Gm11379 13 31797539 to 31800789 3250 + antisense lncRNA gene predicted gene 11379
Cpgi5419 13 31801216 to 31802341 1125 CpG island CpG island 5419
D13Cwr25 13 31803238 to 31803389 151 DNA segment DNA segment, Chr. 13, Case Western Reserve 25
Tssr119138 13 31803849 to 31803853 4 + TSS region transcription start site region 119138
Cpgi5420 13 31805893 to 31808919 3026 CpG island CpG island 5420
Tssr119139 13 31806627 to 31806650 23 + TSS region transcription start site region 119139
Foxc1 13 31806646 to 31810635 3989 + protein coding gene forkhead box C1
Tssr119140 13 31806660 to 31806673 13 + TSS region transcription start site region 119140
Tssr119141 13 31806768 to 31806784 16 + TSS region transcription start site region 119141
Tssr119142 13 31806860 to 31806892 32 + TSS region transcription start site region 119142
Tssr119143 13 31806898 to 31806916 18 + TSS region transcription start site region 119143
Tssr119144 13 31806995 to 31807005 10 + TSS region transcription start site region 119144
Tssr119145 13 31807392 to 31807410 18 + TSS region transcription start site region 119145
Tssr119146 13 31808833 to 31808848 15 + TSS region transcription start site region 119146
D13Cwr24 13 31809617 to 31809840 223 DNA segment DNA segment, Chr. 13, Case Western Reserve 24
Cpgi5421 13 31810564 to 31812079 1515 CpG island CpG island 5421
4930548F15Rik 13 31811161 to 31812475 1314 unclassified gene RIKEN cDNA 4930548F15 gene
D13Cwr23 13 31817332 to 31817640 308 DNA segment DNA segment, Chr. 13, Case Western Reserve 23
Gmds 13 31819583 to 32338725 519142 - protein coding gene GDP-mannose 4, 6-dehydratase
Tssr119147 13 31820063 to 31820068 5 + TSS region transcription start site region 119147
Tssr121992 13 31820587 to 31820620 33 - TSS region transcription start site region 121992
Gm48883 13 31832905 to 31834736 1831 - unclassified gene predicted gene, 48883
D13Cwr22 13 31856149 to 31856298 149 DNA segment DNA segment, Chr. 13, Case Western Reserve 22
D13Cwr21 13 31873413 to 31873664 251 DNA segment DNA segment, Chr. 13, Case Western Reserve 21
D13Mit294 13 31874204 to 31874305 101 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 294
Tssr119148 13 31884187 to 31884200 13 + TSS region transcription start site region 119148
Gm11380 13 31884225 to 31885224 999 + pseudogene predicted gene 11380
D13Cwr20 13 31891937 to 31892154 217 DNA segment DNA segment, Chr. 13, Case Western Reserve 20
Tssr119149 13 31899623 to 31899632 9 + TSS region transcription start site region 119149
D13Cwr19 13 31911116 to 31911243 127 DNA segment DNA segment, Chr. 13, Case Western Reserve 19
D13Cwr18 13 31912182 to 31912436 254 DNA segment DNA segment, Chr. 13, Case Western Reserve 18
D13Cwr17 13 31919508 to 31919662 154 DNA segment DNA segment, Chr. 13, Case Western Reserve 17
D13Cwr16 13 31958217 to 31958366 149 DNA segment DNA segment, Chr. 13, Case Western Reserve 16
Gm35732 13 31971086 to 31972329 1243 + antisense lncRNA gene predicted gene, 35732
9130221L21Rik 13 31976647 to 31979257 2610 unclassified gene RIKEN cDNA 9130221L21 gene
Tssr121993 13 31984823 to 31984827 4 - TSS region transcription start site region 121993
Gm35672 13 32007295 to 32092787 85492 + lncRNA gene predicted gene, 35672
D13Cwr15 13 32013512 to 32013704 192 DNA segment DNA segment, Chr. 13, Case Western Reserve 15
D13Cwr12 13 32067534 to 32067711 177 DNA segment DNA segment, Chr. 13, Case Western Reserve 12
Gm48885 13 32095279 to 32099175 3896 - unclassified gene predicted gene, 48885
Tssr121994 13 32214100 to 32214127 27 - TSS region transcription start site region 121994
Tssr4034 13 32214147 to 32214152 5 - TSS region transcription start site region 4034
Cpgi5422 13 32337948 to 32338955 1007 CpG island CpG island 5422
Tssr121995 13 32338500 to 32338542 42 - TSS region transcription start site region 121995
Tssr121996 13 32338554 to 32338564 10 - TSS region transcription start site region 121996
Tssr121997 13 32338565 to 32338660 95 - TSS region transcription start site region 121997
A730091E23Rik 13 32338819 to 32342643 3824 + unclassified gene RIKEN cDNA A730091E23 gene
Gm11381 13 32379907 to 32383688 3781 - lincRNA gene predicted gene 11381
D13Cwr11 13 32425183 to 32425291 108 DNA segment DNA segment, Chr. 13, Case Western Reserve 11
Tssr119150 13 32465446 to 32465460 14 + TSS region transcription start site region 119150
Gm40876 13 32465453 to 32493376 27923 + lncRNA gene predicted gene, 40876
D13Cwr10 13 32494253 to 32494406 153 DNA segment DNA segment, Chr. 13, Case Western Reserve 10
D13Cwr9 13 32513012 to 32513205 193 DNA segment DNA segment, Chr. 13, Case Western Reserve 9
Gm48073 13 32532919 to 32536415 3496 - lincRNA gene predicted gene, 48073
D13Cwr8 13 32536279 to 32536375 96 DNA segment DNA segment, Chr. 13, Case Western Reserve 8
D13Cwr7 13 32536706 to 32536889 183 DNA segment DNA segment, Chr. 13, Case Western Reserve 7
D13Cwr6 13 32554180 to 32554394 214 DNA segment DNA segment, Chr. 13, Case Western Reserve 6