Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:3090683-3632290

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm17177 13 3086434 to 3123319 36885 + pseudogene predicted gene 17177
Gm46400 13 3116916 to 3119562 2646 - lincRNA gene predicted gene, 46400
Gm18783 13 3124308 to 3125458 1150 - pseudogene predicted gene, 18783
Gm48519 13 3134649 to 3135145 496 - pseudogene predicted gene, 48519
Gm4900 13 3138485 to 3140112 1627 - pseudogene predicted gene 4900
Cpgi5239 13 3139353 to 3139607 254 CpG island CpG island 5239
Tssr121272 13 3139682 to 3139718 36 - TSS region transcription start site region 121272
Tssr121273 13 3140151 to 3140164 13 - TSS region transcription start site region 121273
Gm48520 13 3141356 to 3141503 147 - pseudogene predicted gene, 48520
Speer6-ps1 13 3149475 to 3189678 40203 + pseudogene spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1
Gm40644 13 3149559 to 3169709 20150 - lncRNA gene predicted gene, 40644
Tssr121274 13 3170797 to 3170804 7 - TSS region transcription start site region 121274
Gm40648 13 3202644 to 3216688 14044 - lncRNA gene predicted gene, 40648
Gm35043 13 3267594 to 3358601 91007 - lncRNA gene predicted gene, 35043
Gm40653 13 3276850 to 3282376 5526 + lincRNA gene predicted gene, 40653
Tssr118193 13 3298864 to 3298875 11 + TSS region transcription start site region 118193
Gm9616 13 3298887 to 3299667 780 + pseudogene predicted gene 9616
Gm48530 13 3325296 to 3358455 33159 - lincRNA gene predicted gene, 48530
Gm8616 13 3352952 to 3353988 1036 + pseudogene predicted gene 8616
Cpgi5240 13 3358210 to 3360229 2019 CpG island CpG island 5240
Gm16505 13 3358273 to 3363862 5589 + protein coding gene predicted gene 16505
Cpgi5241 13 3360506 to 3361411 905 CpG island CpG island 5241
Cpgi5242 13 3372913 to 3373551 638 CpG island CpG island 5242
Gm19163 13 3456991 to 3457770 779 - pseudogene predicted gene, 19163
Cpgi5243 13 3457408 to 3457618 210 CpG island CpG island 5243
Cpgi5244 13 3478077 to 3478689 612 CpG island CpG island 5244
Tssr118194 13 3478226 to 3478269 43 + TSS region transcription start site region 118194
2810429I04Rik 13 3498050 to 3501393 3343 + lincRNA gene RIKEN cDNA 2810429I04 gene
Gm40654 13 3514471 to 3519532 5061 - lncRNA gene predicted gene, 40654
Cpgi5245 13 3537521 to 3538904 1383 CpG island CpG island 5245
Tssr121275 13 3537664 to 3537667 3 - TSS region transcription start site region 121275
Gdi2 13 3538075 to 3566261 28186 + protein coding gene guanosine diphosphate (GDP) dissociation inhibitor 2
Tssr118195 13 3538111 to 3538150 39 + TSS region transcription start site region 118195
Tssr118196 13 3538439 to 3538461 22 + TSS region transcription start site region 118196
Tssr118197 13 3538478 to 3538484 6 + TSS region transcription start site region 118197
Tssr118198 13 3538614 to 3538635 21 + TSS region transcription start site region 118198
Tssr118199 13 3541810 to 3541814 4 + TSS region transcription start site region 118199
Tssr118200 13 3548886 to 3548926 40 + TSS region transcription start site region 118200
Tssr118201 13 3556971 to 3557018 47 + TSS region transcription start site region 118201
Gm48838 13 3562385 to 3563618 1233 + unclassified gene predicted gene, 48838
Tssr118202 13 3563901 to 3563909 8 + TSS region transcription start site region 118202
Tssr118203 13 3564987 to 3565019 32 + TSS region transcription start site region 118203
Tasor2 13 3566035 to 3611108 45073 - protein coding gene transcription activation suppressor family member 2
Tssr121276 13 3601458 to 3601471 13 - TSS region transcription start site region 121276
Tssr121277 13 3601482 to 3601494 12 - TSS region transcription start site region 121277
Cpgi5246 13 3610128 to 3611345 1217 CpG island CpG island 5246
Tssr121278 13 3610265 to 3610270 5 - TSS region transcription start site region 121278
Tssr121279 13 3610281 to 3610300 19 - TSS region transcription start site region 121279
Tssr121280 13 3610982 to 3610998 16 - TSS region transcription start site region 121280
Tssr121281 13 3611002 to 3611013 11 - TSS region transcription start site region 121281
Tssr121282 13 3611017 to 3611034 17 - TSS region transcription start site region 121282
Tssr121283 13 3611036 to 3611062 26 - TSS region transcription start site region 121283
Tssr121284 13 3611064 to 3611118 54 - TSS region transcription start site region 121284
Tssr121285 13 3611134 to 3611147 13 - TSS region transcription start site region 121285
Tssr121286 13 3611189 to 3611210 21 - TSS region transcription start site region 121286
Tssr118204 13 3611324 to 3611350 26 + TSS region transcription start site region 118204
Gm20277 13 3612848 to 3613774 926 + pseudogene predicted gene, 20277