Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:30864790-36116002

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492 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Exoc2 13 30813919 to 30974093 160174 - protein coding gene exocyst complex component 2
Tssr121974 13 30897443 to 30897456 13 - TSS region transcription start site region 121974
Hus1b 13 30946576 to 30947761 1185 - protein coding gene HUS1 checkpoint clamp component B
Cpgi5410 13 30947302 to 30947511 209 CpG island CpG island 5410
Tssr4032 13 30948934 to 30948950 16 + TSS region transcription start site region 4032
Tssr121975 13 30950314 to 30950325 11 - TSS region transcription start site region 121975
Cpgi5411 13 30973674 to 30974446 772 CpG island CpG island 5411
Tssr121976 13 30974023 to 30974047 24 - TSS region transcription start site region 121976
Tssr121977 13 30974048 to 30974098 50 - TSS region transcription start site region 121977
Tssr121978 13 30974118 to 30974127 9 - TSS region transcription start site region 121978
Gm5447 13 30974204 to 30975976 1772 + protein coding gene predicted gene 5447
Cpgi5412 13 30985511 to 30985870 359 CpG island CpG island 5412
Gm11371 13 31009177 to 31010362 1185 + pseudogene predicted gene 11371
Gm48662 13 31072730 to 31077845 5115 - lincRNA gene predicted gene, 48662
Tssr121979 13 31077452 to 31077464 12 - TSS region transcription start site region 121979
Tssr121980 13 31079873 to 31079876 3 - TSS region transcription start site region 121980
Gm35302 13 31080897 to 31084403 3506 + lncRNA gene predicted gene, 35302
Tssr119124 13 31191917 to 31191929 12 + TSS region transcription start site region 119124
Gm11372 13 31199086 to 31199655 569 + pseudogene predicted gene 11372
4930401O12Rik 13 31213410 to 31241086 27676 - lincRNA gene RIKEN cDNA 4930401O12 gene
Tssr121981 13 31241072 to 31241088 16 - TSS region transcription start site region 121981
Tssr121982 13 31241092 to 31241099 7 - TSS region transcription start site region 121982
Gm11373 13 31325934 to 31330767 4833 - lincRNA gene predicted gene 11373
G630018N14Rik 13 31349901 to 31408922 59021 - lincRNA gene RIKEN cDNA G630018N14 gene
Gm22330 13 31352980 to 31353094 114 + snoRNA gene predicted gene, 22330
Gm11376 13 31392578 to 31396579 4001 + lincRNA gene predicted gene 11376
Tssr121983 13 31399736 to 31399745 9 - TSS region transcription start site region 121983
Gm23351 13 31427255 to 31427379 124 + snoRNA gene predicted gene, 23351
Tssr121984 13 31431054 to 31431068 14 - TSS region transcription start site region 121984
Tssr121985 13 31438310 to 31438319 9 - TSS region transcription start site region 121985
Tssr121986 13 31439766 to 31439775 9 - TSS region transcription start site region 121986
Tssr121987 13 31442112 to 31442144 32 - TSS region transcription start site region 121987
D13Cwr31 13 31486433 to 31486630 197 DNA segment DNA segment, Chr. 13, Case Western Reserve 31
Brwt8 13 31495667 to 31495667 0 QTL brain weight 8
A530084C06Rik 13 31556134 to 31559333 3199 - protein coding gene RIKEN cDNA A530084C06 gene
Cpgi5413 13 31557501 to 31560221 2720 CpG island CpG island 5413
Tssr119125 13 31558157 to 31558176 19 + TSS region transcription start site region 119125
Foxq1 13 31558170 to 31560976 2806 + protein coding gene forkhead box Q1
Tssr119126 13 31558316 to 31558332 16 + TSS region transcription start site region 119126
Gm11377 13 31564749 to 31573562 8813 + lincRNA gene predicted gene 11377
1700018A04Rik 13 31565492 to 31582513 17021 - lincRNA gene RIKEN cDNA 1700018A04 gene
Tssr121988 13 31582499 to 31582518 19 - TSS region transcription start site region 121988
D13Dcr2 13 31610551 to 31610646 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 2
Cpgi5414 13 31614698 to 31615480 782 CpG island CpG island 5414
Cpgi5415 13 31619071 to 31619313 242 CpG island CpG island 5415
Gm11378 13 31619168 to 31620369 1201 + lincRNA gene predicted gene 11378
Cpgi5416 13 31620138 to 31620739 601 CpG island CpG island 5416
Cpgi5417 13 31624958 to 31627327 2369 CpG island CpG island 5417
Tssr4033 13 31625485 to 31625498 13 - TSS region transcription start site region 4033
Tssr121989 13 31625549 to 31625564 15 - TSS region transcription start site region 121989
Tssr119127 13 31625679 to 31625727 48 + TSS region transcription start site region 119127
Tssr119128 13 31625728 to 31625744 16 + TSS region transcription start site region 119128
Tssr119129 13 31625745 to 31625759 14 + TSS region transcription start site region 119129
Tssr119130 13 31625793 to 31625800 7 + TSS region transcription start site region 119130
Tssr119131 13 31625802 to 31625813 11 + TSS region transcription start site region 119131
Foxf2 13 31625816 to 31631403 5587 + protein coding gene forkhead box F2
Tssr119132 13 31625906 to 31625919 13 + TSS region transcription start site region 119132
Gm27516 13 31626446 to 31626543 97 - miRNA gene predicted gene, 27516
Cpgi5418 13 31628993 to 31630155 1162 CpG island CpG island 5418
D13Cwr30 13 31632616 to 31632723 107 DNA segment DNA segment, Chr. 13, Case Western Reserve 30
Tssr121990 13 31674435 to 31674441 6 - TSS region transcription start site region 121990
Tssr121991 13 31681455 to 31681482 27 - TSS region transcription start site region 121991
Gm25186 13 31737633 to 31737740 107 - snRNA gene predicted gene, 25186
D13Cwr27 13 31758521 to 31758642 121 DNA segment DNA segment, Chr. 13, Case Western Reserve 27
Tssr119133 13 31785112 to 31785120 8 + TSS region transcription start site region 119133
Tssr119134 13 31785133 to 31785145 12 + TSS region transcription start site region 119134
Tssr119135 13 31785223 to 31785232 9 + TSS region transcription start site region 119135
Tssr119136 13 31785243 to 31785253 10 + TSS region transcription start site region 119136
Tssr119137 13 31785258 to 31785270 12 + TSS region transcription start site region 119137
D13Cwr26 13 31792482 to 31792666 184 DNA segment DNA segment, Chr. 13, Case Western Reserve 26
Gm11379 13 31797539 to 31800789 3250 + antisense lncRNA gene predicted gene 11379
Cpgi5419 13 31801216 to 31802341 1125 CpG island CpG island 5419
D13Cwr25 13 31803238 to 31803389 151 DNA segment DNA segment, Chr. 13, Case Western Reserve 25
Tssr119138 13 31803849 to 31803853 4 + TSS region transcription start site region 119138
Cpgi5420 13 31805893 to 31808919 3026 CpG island CpG island 5420
Tssr119139 13 31806627 to 31806650 23 + TSS region transcription start site region 119139
Foxc1 13 31806646 to 31810635 3989 + protein coding gene forkhead box C1
Tssr119140 13 31806660 to 31806673 13 + TSS region transcription start site region 119140
Tssr119141 13 31806768 to 31806784 16 + TSS region transcription start site region 119141
Tssr119142 13 31806860 to 31806892 32 + TSS region transcription start site region 119142
Tssr119143 13 31806898 to 31806916 18 + TSS region transcription start site region 119143
Tssr119144 13 31806995 to 31807005 10 + TSS region transcription start site region 119144
Tssr119145 13 31807392 to 31807410 18 + TSS region transcription start site region 119145
Tssr119146 13 31808833 to 31808848 15 + TSS region transcription start site region 119146
D13Cwr24 13 31809617 to 31809840 223 DNA segment DNA segment, Chr. 13, Case Western Reserve 24
Cpgi5421 13 31810564 to 31812079 1515 CpG island CpG island 5421
4930548F15Rik 13 31811161 to 31812475 1314 unclassified gene RIKEN cDNA 4930548F15 gene
D13Cwr23 13 31817332 to 31817640 308 DNA segment DNA segment, Chr. 13, Case Western Reserve 23
Gmds 13 31819583 to 32338725 519142 - protein coding gene GDP-mannose 4, 6-dehydratase
Tssr119147 13 31820063 to 31820068 5 + TSS region transcription start site region 119147
Tssr121992 13 31820587 to 31820620 33 - TSS region transcription start site region 121992
Gm48883 13 31832905 to 31834736 1831 - unclassified gene predicted gene, 48883
D13Cwr22 13 31856149 to 31856298 149 DNA segment DNA segment, Chr. 13, Case Western Reserve 22
D13Cwr21 13 31873413 to 31873664 251 DNA segment DNA segment, Chr. 13, Case Western Reserve 21
D13Mit294 13 31874204 to 31874305 101 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 294
Tssr119148 13 31884187 to 31884200 13 + TSS region transcription start site region 119148
Gm11380 13 31884225 to 31885224 999 + pseudogene predicted gene 11380
D13Cwr20 13 31891937 to 31892154 217 DNA segment DNA segment, Chr. 13, Case Western Reserve 20
Tssr119149 13 31899623 to 31899632 9 + TSS region transcription start site region 119149
D13Cwr19 13 31911116 to 31911243 127 DNA segment DNA segment, Chr. 13, Case Western Reserve 19
D13Cwr18 13 31912182 to 31912436 254 DNA segment DNA segment, Chr. 13, Case Western Reserve 18
D13Cwr17 13 31919508 to 31919662 154 DNA segment DNA segment, Chr. 13, Case Western Reserve 17
D13Cwr16 13 31958217 to 31958366 149 DNA segment DNA segment, Chr. 13, Case Western Reserve 16
Gm35732 13 31971086 to 31972329 1243 + antisense lncRNA gene predicted gene, 35732
9130221L21Rik 13 31976647 to 31979257 2610 unclassified gene RIKEN cDNA 9130221L21 gene
Tssr121993 13 31984823 to 31984827 4 - TSS region transcription start site region 121993
Gm35672 13 32007295 to 32092787 85492 + lncRNA gene predicted gene, 35672
D13Cwr15 13 32013512 to 32013704 192 DNA segment DNA segment, Chr. 13, Case Western Reserve 15
D13Cwr12 13 32067534 to 32067711 177 DNA segment DNA segment, Chr. 13, Case Western Reserve 12
Gm48885 13 32095279 to 32099175 3896 - unclassified gene predicted gene, 48885
Tssr121994 13 32214100 to 32214127 27 - TSS region transcription start site region 121994
Tssr4034 13 32214147 to 32214152 5 - TSS region transcription start site region 4034
Cpgi5422 13 32337948 to 32338955 1007 CpG island CpG island 5422
Tssr121995 13 32338500 to 32338542 42 - TSS region transcription start site region 121995
Tssr121996 13 32338554 to 32338564 10 - TSS region transcription start site region 121996
Tssr121997 13 32338565 to 32338660 95 - TSS region transcription start site region 121997
A730091E23Rik 13 32338819 to 32342643 3824 + unclassified gene RIKEN cDNA A730091E23 gene
Gm11381 13 32379907 to 32383688 3781 - lincRNA gene predicted gene 11381
D13Cwr11 13 32425183 to 32425291 108 DNA segment DNA segment, Chr. 13, Case Western Reserve 11
Tssr119150 13 32465446 to 32465460 14 + TSS region transcription start site region 119150
Gm40876 13 32465453 to 32493376 27923 + lncRNA gene predicted gene, 40876
D13Cwr10 13 32494253 to 32494406 153 DNA segment DNA segment, Chr. 13, Case Western Reserve 10
D13Cwr9 13 32513012 to 32513205 193 DNA segment DNA segment, Chr. 13, Case Western Reserve 9
Gm48073 13 32532919 to 32536415 3496 - lincRNA gene predicted gene, 48073
D13Cwr8 13 32536279 to 32536375 96 DNA segment DNA segment, Chr. 13, Case Western Reserve 8
D13Cwr7 13 32536706 to 32536889 183 DNA segment DNA segment, Chr. 13, Case Western Reserve 7
D13Cwr6 13 32554180 to 32554394 214 DNA segment DNA segment, Chr. 13, Case Western Reserve 6
D13Cwr5 13 32607337 to 32607580 243 DNA segment DNA segment, Chr. 13, Case Western Reserve 5
D13Cwr4 13 32611098 to 32611327 229 DNA segment DNA segment, Chr. 13, Case Western Reserve 4
D13Mit307 13 32655602 to 32655706 104 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 307
D13Cwr3 13 32674056 to 32674239 183 DNA segment DNA segment, Chr. 13, Case Western Reserve 3
Mylk4 13 32700834 to 32783954 83120 - protein coding gene myosin light chain kinase family, member 4
Tssr121998 13 32701707 to 32701726 19 - TSS region transcription start site region 121998
D13Cwr2 13 32702775 to 32702918 143 DNA segment DNA segment, Chr. 13, Case Western Reserve 2
Tssr121999 13 32703489 to 32703515 26 - TSS region transcription start site region 121999
2310045N14Rik 13 32725850 to 32726971 1121 unclassified gene RIKEN cDNA 2310045N14 gene
Gm27342 13 32758202 to 32758310 108 + snRNA gene predicted gene, 27342
D13Mit265 13 32770541 to 32770650 109 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 265
Cpgi5423 13 32776171 to 32776448 277 CpG island CpG island 5423
Tssr122000 13 32776396 to 32776425 29 - TSS region transcription start site region 122000
Tssr122001 13 32776435 to 32776446 11 - TSS region transcription start site region 122001
Tssr122002 13 32776464 to 32776477 13 - TSS region transcription start site region 122002
Tssr122003 13 32776543 to 32776558 15 - TSS region transcription start site region 122003
Tssr122004 13 32783903 to 32783914 11 - TSS region transcription start site region 122004
Tssr122005 13 32783917 to 32783929 12 - TSS region transcription start site region 122005
Tssr122006 13 32783934 to 32783946 12 - TSS region transcription start site region 122006
Tssr122007 13 32783957 to 32783975 18 - TSS region transcription start site region 122007
Tssr122008 13 32783994 to 32784007 13 - TSS region transcription start site region 122008
Tssr122009 13 32784025 to 32784042 17 - TSS region transcription start site region 122009
D13Cwr1 13 32794840 to 32795073 233 DNA segment DNA segment, Chr. 13, Case Western Reserve 1
Cpgi5424 13 32801702 to 32803248 1546 CpG island CpG island 5424
Tssr119151 13 32802007 to 32802152 145 + TSS region transcription start site region 119151
Wrnip1 13 32802038 to 32822609 20571 + protein coding gene Werner helicase interacting protein 1
D930007J09Rik 13 32802457 to 32802849 392 - protein coding gene RIKEN cDNA D930007J09 gene
Tssr122010 13 32806960 to 32806978 18 - TSS region transcription start site region 122010
Tssr122011 13 32806984 to 32807020 36 - TSS region transcription start site region 122011
Serpinb1a 13 32842092 to 32851185 9093 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 1a
Tssr122012 13 32845805 to 32845816 11 - TSS region transcription start site region 122012
Tssr122013 13 32851176 to 32851186 10 - TSS region transcription start site region 122013
Serpinb1-ps1 13 32859959 to 32863170 3211 - pseudogene serine (or cysteine) peptidase inhibitor, clade B, member 1, pseudogene
Tssr119152 13 32860960 to 32860967 7 + TSS region transcription start site region 119152
Tssr119153 13 32861009 to 32861021 12 + TSS region transcription start site region 119153
Gm35899 13 32865053 to 32870912 5859 + lncRNA gene predicted gene, 35899
Serpinb1c 13 32881434 to 32898211 16777 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 1c
Tssr122014 13 32898147 to 32898160 13 - TSS region transcription start site region 122014
Gm18311 13 32923221 to 32924494 1273 - pseudogene predicted gene, 18311
Tssr122015 13 32932415 to 32932439 24 - TSS region transcription start site region 122015
Gm11382 13 32938513 to 32938691 178 - pseudogene predicted pseudogene 11382
Tssr122016 13 32939319 to 32939330 11 - TSS region transcription start site region 122016
Tssr122017 13 32940586 to 32940622 36 - TSS region transcription start site region 122017
Tssr122018 13 32940625 to 32940638 13 - TSS region transcription start site region 122018
Tssr119154 13 32956783 to 32956816 33 + TSS region transcription start site region 119154
Tssr122019 13 32964052 to 32964062 10 - TSS region transcription start site region 122019
Serpinb6b 13 32965209 to 32979067 13858 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 6b
Tssr119155 13 32965254 to 32965267 13 + TSS region transcription start site region 119155
Tssr119156 13 32965272 to 32965283 11 + TSS region transcription start site region 119156
Tssr119157 13 32965303 to 32965317 14 + TSS region transcription start site region 119157
Tssr119158 13 32965323 to 32965330 7 + TSS region transcription start site region 119158
Tssr119159 13 32965494 to 32965511 17 + TSS region transcription start site region 119159
Tssr119160 13 32965693 to 32965712 19 + TSS region transcription start site region 119160
Tssr119161 13 32996969 to 32996989 20 + TSS region transcription start site region 119161
Tssr119162 13 32996998 to 32997011 13 + TSS region transcription start site region 119162
Gm47662 13 32997062 to 33001750 4688 + lincRNA gene predicted gene, 47662
Gm36181 13 33000998 to 33006525 5527 - lncRNA gene predicted gene, 36181
Tssr119163 13 33002040 to 33002068 28 + TSS region transcription start site region 119163
Tssr119164 13 33003158 to 33003178 20 + TSS region transcription start site region 119164
Tssr119165 13 33003222 to 33003257 35 + TSS region transcription start site region 119165
Serpinb9 13 33003250 to 33017957 14707 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 9
Tssr119166 13 33003456 to 33003471 15 + TSS region transcription start site region 119166
Tssr119167 13 33004158 to 33004161 3 + TSS region transcription start site region 119167
Tssr119168 13 33004528 to 33004553 25 + TSS region transcription start site region 119168
Tssr119169 13 33004563 to 33004578 15 + TSS region transcription start site region 119169
Tssr119170 13 33004596 to 33004609 13 + TSS region transcription start site region 119170
Tssr119171 13 33004620 to 33004640 20 + TSS region transcription start site region 119171
Tssr119172 13 33013922 to 33013947 25 + TSS region transcription start site region 119172
Tssr119173 13 33015924 to 33015937 13 + TSS region transcription start site region 119173
Tssr119174 13 33016145 to 33016163 18 + TSS region transcription start site region 119174
Tssr119175 13 33016184 to 33016232 48 + TSS region transcription start site region 119175
Tssr119176 13 33017125 to 33017135 10 + TSS region transcription start site region 119176
Tssr119177 13 33027408 to 33027419 11 + TSS region transcription start site region 119177