Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:30863410-31591086

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Exoc2 13 30813919 to 30974093 160174 - protein coding gene exocyst complex component 2
Tssr121974 13 30897443 to 30897456 13 - TSS region transcription start site region 121974
Hus1b 13 30946576 to 30947761 1185 - protein coding gene HUS1 checkpoint clamp component B
Cpgi5410 13 30947302 to 30947511 209 CpG island CpG island 5410
Tssr4032 13 30948934 to 30948950 16 + TSS region transcription start site region 4032
Tssr121975 13 30950314 to 30950325 11 - TSS region transcription start site region 121975
Cpgi5411 13 30973674 to 30974446 772 CpG island CpG island 5411
Tssr121976 13 30974023 to 30974047 24 - TSS region transcription start site region 121976
Tssr121977 13 30974048 to 30974098 50 - TSS region transcription start site region 121977
Tssr121978 13 30974118 to 30974127 9 - TSS region transcription start site region 121978
Gm5447 13 30974204 to 30975976 1772 + protein coding gene predicted gene 5447
Cpgi5412 13 30985511 to 30985870 359 CpG island CpG island 5412
Gm11371 13 31009177 to 31010362 1185 + pseudogene predicted gene 11371
Gm48662 13 31072730 to 31077845 5115 - lincRNA gene predicted gene, 48662
Tssr121979 13 31077452 to 31077464 12 - TSS region transcription start site region 121979
Tssr121980 13 31079873 to 31079876 3 - TSS region transcription start site region 121980
Gm35302 13 31080897 to 31084403 3506 + lncRNA gene predicted gene, 35302
Tssr119124 13 31191917 to 31191929 12 + TSS region transcription start site region 119124
Gm11372 13 31199086 to 31199655 569 + pseudogene predicted gene 11372
4930401O12Rik 13 31213410 to 31241086 27676 - lincRNA gene RIKEN cDNA 4930401O12 gene
Tssr121981 13 31241072 to 31241088 16 - TSS region transcription start site region 121981
Tssr121982 13 31241092 to 31241099 7 - TSS region transcription start site region 121982
Gm11373 13 31325934 to 31330767 4833 - lincRNA gene predicted gene 11373
G630018N14Rik 13 31349901 to 31408922 59021 - lincRNA gene RIKEN cDNA G630018N14 gene
Gm22330 13 31352980 to 31353094 114 + snoRNA gene predicted gene, 22330
Gm11376 13 31392578 to 31396579 4001 + lincRNA gene predicted gene 11376
Tssr121983 13 31399736 to 31399745 9 - TSS region transcription start site region 121983
Gm23351 13 31427255 to 31427379 124 + snoRNA gene predicted gene, 23351
Tssr121984 13 31431054 to 31431068 14 - TSS region transcription start site region 121984
Tssr121985 13 31438310 to 31438319 9 - TSS region transcription start site region 121985
Tssr121986 13 31439766 to 31439775 9 - TSS region transcription start site region 121986
Tssr121987 13 31442112 to 31442144 32 - TSS region transcription start site region 121987
D13Cwr31 13 31486433 to 31486630 197 DNA segment DNA segment, Chr. 13, Case Western Reserve 31
Brwt8 13 31495667 to 31495667 0 QTL brain weight 8
A530084C06Rik 13 31556134 to 31559333 3199 - protein coding gene RIKEN cDNA A530084C06 gene
Cpgi5413 13 31557501 to 31560221 2720 CpG island CpG island 5413
Tssr119125 13 31558157 to 31558176 19 + TSS region transcription start site region 119125
Foxq1 13 31558170 to 31560976 2806 + protein coding gene forkhead box Q1
Tssr119126 13 31558316 to 31558332 16 + TSS region transcription start site region 119126
Gm11377 13 31564749 to 31573562 8813 + lincRNA gene predicted gene 11377
1700018A04Rik 13 31565492 to 31582513 17021 - lincRNA gene RIKEN cDNA 1700018A04 gene
Tssr121988 13 31582499 to 31582518 19 - TSS region transcription start site region 121988