Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:30476086-33467329

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316 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D13Dcr7 13 30519830 to 30519929 99 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 7
Tssr121949 13 30532535 to 30532566 31 - TSS region transcription start site region 121949
Uqcrfs1 13 30540312 to 30545316 5004 - protein coding gene ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
Cpgi5406 13 30544754 to 30545586 832 CpG island CpG island 5406
Tssr121950 13 30545254 to 30545346 92 - TSS region transcription start site region 121950
Tssr121951 13 30551358 to 30551381 23 - TSS region transcription start site region 121951
Tssr121952 13 30551383 to 30551388 5 - TSS region transcription start site region 121952
Tssr121953 13 30551727 to 30551731 4 - TSS region transcription start site region 121953
Gm35109 13 30611041 to 30614625 3584 - lncRNA gene predicted gene, 35109
Tssr119089 13 30614909 to 30614925 16 + TSS region transcription start site region 119089
4930519D14Rik 13 30615043 to 30624258 9215 + lincRNA gene RIKEN cDNA 4930519D14 gene
Tssr121954 13 30629953 to 30629988 35 - TSS region transcription start site region 121954
Gm35158 13 30652759 to 30659874 7115 - lncRNA gene predicted gene, 35158
Cpgi5407 13 30659438 to 30660598 1160 CpG island CpG island 5407
Tssr119090 13 30659888 to 30659941 53 + TSS region transcription start site region 119090
Tssr4029 13 30659954 to 30659977 23 + TSS region transcription start site region 4029
Tssr119091 13 30660044 to 30660116 72 + TSS region transcription start site region 119091
Dusp22 13 30660059 to 30711232 51173 + protein coding gene dual specificity phosphatase 22
Tssr121955 13 30660230 to 30660242 12 - TSS region transcription start site region 121955
Tssr121956 13 30684642 to 30684673 31 - TSS region transcription start site region 121956
Tssr119092 13 30731749 to 30731757 8 + TSS region transcription start site region 119092
Gm11370 13 30731777 to 30732036 259 + pseudogene predicted gene 11370
Tssr119093 13 30747776 to 30747805 29 + TSS region transcription start site region 119093
Tssr119094 13 30748662 to 30748685 23 + TSS region transcription start site region 119094
Tssr119095 13 30748714 to 30748721 7 + TSS region transcription start site region 119095
Cpgi5408 13 30749155 to 30749517 362 CpG island CpG island 5408
Irf4 13 30749226 to 30766976 17750 + protein coding gene interferon regulatory factor 4
Tssr119096 13 30749230 to 30749247 17 + TSS region transcription start site region 119096
Tssr121957 13 30749416 to 30749421 5 - TSS region transcription start site region 121957
Tssr119097 13 30749528 to 30749576 48 + TSS region transcription start site region 119097
Tssr119098 13 30749956 to 30749982 26 + TSS region transcription start site region 119098
Cpgi5409 13 30750155 to 30750965 810 CpG island CpG island 5409
Tssr119099 13 30750652 to 30750675 23 + TSS region transcription start site region 119099
Tssr119100 13 30751090 to 30751096 6 + TSS region transcription start site region 119100
Tssr119101 13 30751706 to 30751730 24 + TSS region transcription start site region 119101
Tssr119102 13 30752728 to 30752740 12 + TSS region transcription start site region 119102
Tssr119103 13 30753448 to 30753454 6 + TSS region transcription start site region 119103
Tssr121958 13 30753476 to 30753496 20 - TSS region transcription start site region 121958
Tssr119104 13 30753478 to 30753499 21 + TSS region transcription start site region 119104
Tssr119105 13 30757630 to 30757632 2 + TSS region transcription start site region 119105
Tssr4030 13 30760984 to 30760986 2 + TSS region transcription start site region 4030
Tssr119106 13 30761619 to 30761630 11 + TSS region transcription start site region 119106
Tssr119107 13 30761662 to 30761671 9 + TSS region transcription start site region 119107
Tssr119108 13 30764125 to 30764132 7 + TSS region transcription start site region 119108
Tssr119109 13 30764517 to 30764524 7 + TSS region transcription start site region 119109
Tssr119110 13 30764561 to 30764573 12 + TSS region transcription start site region 119110
Tssr119111 13 30764787 to 30764792 5 + TSS region transcription start site region 119111
Tssr119112 13 30764828 to 30764841 13 + TSS region transcription start site region 119112
Tssr119113 13 30764852 to 30764860 8 + TSS region transcription start site region 119113
Tssr119114 13 30764877 to 30764888 11 + TSS region transcription start site region 119114
Tssr119115 13 30766172 to 30766179 7 + TSS region transcription start site region 119115
Tssr121959 13 30781998 to 30782008 10 - TSS region transcription start site region 121959
Gm29675 13 30784433 to 30795226 10793 - lincRNA gene predicted gene, 29675
Tssr119116 13 30786368 to 30786380 12 + TSS region transcription start site region 119116
Tssr119117 13 30786396 to 30786412 16 + TSS region transcription start site region 119117
Tssr119118 13 30786509 to 30786518 9 + TSS region transcription start site region 119118
Tssr119119 13 30786537 to 30786550 13 + TSS region transcription start site region 119119
Tssr119120 13 30786567 to 30786574 7 + TSS region transcription start site region 119120
Tssr121960 13 30787673 to 30787682 9 - TSS region transcription start site region 121960
Tssr119121 13 30788126 to 30788148 22 + TSS region transcription start site region 119121
Tssr121961 13 30792206 to 30792225 19 - TSS region transcription start site region 121961
Tssr121962 13 30792250 to 30792261 11 - TSS region transcription start site region 121962
Tssr121963 13 30792264 to 30792271 7 - TSS region transcription start site region 121963
Tssr121964 13 30792297 to 30792304 7 - TSS region transcription start site region 121964
Tssr119122 13 30792620 to 30792627 7 + TSS region transcription start site region 119122
Tssr119123 13 30792636 to 30792647 11 + TSS region transcription start site region 119123
Tssr121965 13 30794018 to 30794063 45 - TSS region transcription start site region 121965
Exoc2 13 30813919 to 30974093 160174 - protein coding gene exocyst complex component 2
Tssr4031 13 30814321 to 30814328 7 - TSS region transcription start site region 4031
Tssr121966 13 30817493 to 30817504 11 - TSS region transcription start site region 121966
Tssr121967 13 30819805 to 30819810 5 - TSS region transcription start site region 121967
Tssr121968 13 30820062 to 30820071 9 - TSS region transcription start site region 121968
Tssr121969 13 30820632 to 30820643 11 - TSS region transcription start site region 121969
Tssr121970 13 30820659 to 30820669 10 - TSS region transcription start site region 121970
Tssr121971 13 30820734 to 30820739 5 - TSS region transcription start site region 121971
Tssr121972 13 30820742 to 30820760 18 - TSS region transcription start site region 121972
Tssr121973 13 30833556 to 30833567 11 - TSS region transcription start site region 121973
Tssr121974 13 30897443 to 30897456 13 - TSS region transcription start site region 121974
Hus1b 13 30946576 to 30947761 1185 - protein coding gene HUS1 checkpoint clamp component B
Cpgi5410 13 30947302 to 30947511 209 CpG island CpG island 5410
Tssr4032 13 30948934 to 30948950 16 + TSS region transcription start site region 4032
Tssr121975 13 30950314 to 30950325 11 - TSS region transcription start site region 121975
Cpgi5411 13 30973674 to 30974446 772 CpG island CpG island 5411
Tssr121976 13 30974023 to 30974047 24 - TSS region transcription start site region 121976
Tssr121977 13 30974048 to 30974098 50 - TSS region transcription start site region 121977
Tssr121978 13 30974118 to 30974127 9 - TSS region transcription start site region 121978
Gm5447 13 30974204 to 30975976 1772 + protein coding gene predicted gene 5447
Cpgi5412 13 30985511 to 30985870 359 CpG island CpG island 5412
Gm11371 13 31009177 to 31010362 1185 + pseudogene predicted gene 11371
Gm48662 13 31072730 to 31077845 5115 - lincRNA gene predicted gene, 48662
Tssr121979 13 31077452 to 31077464 12 - TSS region transcription start site region 121979
Tssr121980 13 31079873 to 31079876 3 - TSS region transcription start site region 121980
Gm35302 13 31080897 to 31084403 3506 + lncRNA gene predicted gene, 35302
Tssr119124 13 31191917 to 31191929 12 + TSS region transcription start site region 119124
Gm11372 13 31199086 to 31199655 569 + pseudogene predicted gene 11372
4930401O12Rik 13 31213410 to 31241086 27676 - lincRNA gene RIKEN cDNA 4930401O12 gene
Tssr121981 13 31241072 to 31241088 16 - TSS region transcription start site region 121981
Tssr121982 13 31241092 to 31241099 7 - TSS region transcription start site region 121982
Gm11373 13 31325934 to 31330767 4833 - lincRNA gene predicted gene 11373
G630018N14Rik 13 31349901 to 31408922 59021 - lincRNA gene RIKEN cDNA G630018N14 gene
Gm22330 13 31352980 to 31353094 114 + snoRNA gene predicted gene, 22330
Gm11376 13 31392578 to 31396579 4001 + lincRNA gene predicted gene 11376
Tssr121983 13 31399736 to 31399745 9 - TSS region transcription start site region 121983
Gm23351 13 31427255 to 31427379 124 + snoRNA gene predicted gene, 23351
Tssr121984 13 31431054 to 31431068 14 - TSS region transcription start site region 121984
Tssr121985 13 31438310 to 31438319 9 - TSS region transcription start site region 121985
Tssr121986 13 31439766 to 31439775 9 - TSS region transcription start site region 121986
Tssr121987 13 31442112 to 31442144 32 - TSS region transcription start site region 121987
D13Cwr31 13 31486433 to 31486630 197 DNA segment DNA segment, Chr. 13, Case Western Reserve 31
Brwt8 13 31495667 to 31495667 0 QTL brain weight 8
A530084C06Rik 13 31556134 to 31559333 3199 - protein coding gene RIKEN cDNA A530084C06 gene
Cpgi5413 13 31557501 to 31560221 2720 CpG island CpG island 5413
Tssr119125 13 31558157 to 31558176 19 + TSS region transcription start site region 119125
Foxq1 13 31558170 to 31560976 2806 + protein coding gene forkhead box Q1
Tssr119126 13 31558316 to 31558332 16 + TSS region transcription start site region 119126
Gm11377 13 31564749 to 31573562 8813 + lincRNA gene predicted gene 11377
1700018A04Rik 13 31565492 to 31582513 17021 - lincRNA gene RIKEN cDNA 1700018A04 gene
Tssr121988 13 31582499 to 31582518 19 - TSS region transcription start site region 121988
D13Dcr2 13 31610551 to 31610646 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 2
Cpgi5414 13 31614698 to 31615480 782 CpG island CpG island 5414
Cpgi5415 13 31619071 to 31619313 242 CpG island CpG island 5415
Gm11378 13 31619168 to 31620369 1201 + lincRNA gene predicted gene 11378
Cpgi5416 13 31620138 to 31620739 601 CpG island CpG island 5416
Cpgi5417 13 31624958 to 31627327 2369 CpG island CpG island 5417
Tssr4033 13 31625485 to 31625498 13 - TSS region transcription start site region 4033
Tssr121989 13 31625549 to 31625564 15 - TSS region transcription start site region 121989
Tssr119127 13 31625679 to 31625727 48 + TSS region transcription start site region 119127
Tssr119128 13 31625728 to 31625744 16 + TSS region transcription start site region 119128
Tssr119129 13 31625745 to 31625759 14 + TSS region transcription start site region 119129
Tssr119130 13 31625793 to 31625800 7 + TSS region transcription start site region 119130
Tssr119131 13 31625802 to 31625813 11 + TSS region transcription start site region 119131
Foxf2 13 31625816 to 31631403 5587 + protein coding gene forkhead box F2
Tssr119132 13 31625906 to 31625919 13 + TSS region transcription start site region 119132
Gm27516 13 31626446 to 31626543 97 - miRNA gene predicted gene, 27516
Cpgi5418 13 31628993 to 31630155 1162 CpG island CpG island 5418
D13Cwr30 13 31632616 to 31632723 107 DNA segment DNA segment, Chr. 13, Case Western Reserve 30
Tssr121990 13 31674435 to 31674441 6 - TSS region transcription start site region 121990
Tssr121991 13 31681455 to 31681482 27 - TSS region transcription start site region 121991
Gm25186 13 31737633 to 31737740 107 - snRNA gene predicted gene, 25186
D13Cwr27 13 31758521 to 31758642 121 DNA segment DNA segment, Chr. 13, Case Western Reserve 27
Tssr119133 13 31785112 to 31785120 8 + TSS region transcription start site region 119133
Tssr119134 13 31785133 to 31785145 12 + TSS region transcription start site region 119134
Tssr119135 13 31785223 to 31785232 9 + TSS region transcription start site region 119135
Tssr119136 13 31785243 to 31785253 10 + TSS region transcription start site region 119136
Tssr119137 13 31785258 to 31785270 12 + TSS region transcription start site region 119137
D13Cwr26 13 31792482 to 31792666 184 DNA segment DNA segment, Chr. 13, Case Western Reserve 26
Gm11379 13 31797539 to 31800789 3250 + antisense lncRNA gene predicted gene 11379
Cpgi5419 13 31801216 to 31802341 1125 CpG island CpG island 5419
D13Cwr25 13 31803238 to 31803389 151 DNA segment DNA segment, Chr. 13, Case Western Reserve 25
Tssr119138 13 31803849 to 31803853 4 + TSS region transcription start site region 119138
Cpgi5420 13 31805893 to 31808919 3026 CpG island CpG island 5420
Tssr119139 13 31806627 to 31806650 23 + TSS region transcription start site region 119139
Foxc1 13 31806646 to 31810635 3989 + protein coding gene forkhead box C1
Tssr119140 13 31806660 to 31806673 13 + TSS region transcription start site region 119140
Tssr119141 13 31806768 to 31806784 16 + TSS region transcription start site region 119141
Tssr119142 13 31806860 to 31806892 32 + TSS region transcription start site region 119142
Tssr119143 13 31806898 to 31806916 18 + TSS region transcription start site region 119143
Tssr119144 13 31806995 to 31807005 10 + TSS region transcription start site region 119144
Tssr119145 13 31807392 to 31807410 18 + TSS region transcription start site region 119145
Tssr119146 13 31808833 to 31808848 15 + TSS region transcription start site region 119146
D13Cwr24 13 31809617 to 31809840 223 DNA segment DNA segment, Chr. 13, Case Western Reserve 24
Cpgi5421 13 31810564 to 31812079 1515 CpG island CpG island 5421
4930548F15Rik 13 31811161 to 31812475 1314 unclassified gene RIKEN cDNA 4930548F15 gene
D13Cwr23 13 31817332 to 31817640 308 DNA segment DNA segment, Chr. 13, Case Western Reserve 23
Gmds 13 31819583 to 32338725 519142 - protein coding gene GDP-mannose 4, 6-dehydratase
Tssr119147 13 31820063 to 31820068 5 + TSS region transcription start site region 119147
Tssr121992 13 31820587 to 31820620 33 - TSS region transcription start site region 121992
Gm48883 13 31832905 to 31834736 1831 - unclassified gene predicted gene, 48883
D13Cwr22 13 31856149 to 31856298 149 DNA segment DNA segment, Chr. 13, Case Western Reserve 22
D13Cwr21 13 31873413 to 31873664 251 DNA segment DNA segment, Chr. 13, Case Western Reserve 21
D13Mit294 13 31874204 to 31874305 101 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 294
Tssr119148 13 31884187 to 31884200 13 + TSS region transcription start site region 119148
Gm11380 13 31884225 to 31885224 999 + pseudogene predicted gene 11380
D13Cwr20 13 31891937 to 31892154 217 DNA segment DNA segment, Chr. 13, Case Western Reserve 20
Tssr119149 13 31899623 to 31899632 9 + TSS region transcription start site region 119149
D13Cwr19 13 31911116 to 31911243 127 DNA segment DNA segment, Chr. 13, Case Western Reserve 19
D13Cwr18 13 31912182 to 31912436 254 DNA segment DNA segment, Chr. 13, Case Western Reserve 18
D13Cwr17 13 31919508 to 31919662 154 DNA segment DNA segment, Chr. 13, Case Western Reserve 17
D13Cwr16 13 31958217 to 31958366 149 DNA segment DNA segment, Chr. 13, Case Western Reserve 16
Gm35732 13 31971086 to 31972329 1243 + antisense lncRNA gene predicted gene, 35732
9130221L21Rik 13 31976647 to 31979257 2610 unclassified gene RIKEN cDNA 9130221L21 gene
Tssr121993 13 31984823 to 31984827 4 - TSS region transcription start site region 121993
Gm35672 13 32007295 to 32092787 85492 + lncRNA gene predicted gene, 35672
D13Cwr15 13 32013512 to 32013704 192 DNA segment DNA segment, Chr. 13, Case Western Reserve 15
D13Cwr12 13 32067534 to 32067711 177 DNA segment DNA segment, Chr. 13, Case Western Reserve 12
Gm48885 13 32095279 to 32099175 3896 - unclassified gene predicted gene, 48885
Tssr121994 13 32214100 to 32214127 27 - TSS region transcription start site region 121994
Tssr4034 13 32214147 to 32214152 5 - TSS region transcription start site region 4034
Cpgi5422 13 32337948 to 32338955 1007 CpG island CpG island 5422
Tssr121995 13 32338500 to 32338542 42 - TSS region transcription start site region 121995
Tssr121996 13 32338554 to 32338564 10 - TSS region transcription start site region 121996
Tssr121997 13 32338565 to 32338660 95 - TSS region transcription start site region 121997
A730091E23Rik 13 32338819 to 32342643 3824 + unclassified gene RIKEN cDNA A730091E23 gene
Gm11381 13 32379907 to 32383688 3781 - lincRNA gene predicted gene 11381
D13Cwr11 13 32425183 to 32425291 108 DNA segment DNA segment, Chr. 13, Case Western Reserve 11
Tssr119150 13 32465446 to 32465460 14 + TSS region transcription start site region 119150
Gm40876 13 32465453 to 32493376 27923 + lncRNA gene predicted gene, 40876
D13Cwr10 13 32494253 to 32494406 153 DNA segment DNA segment, Chr. 13, Case Western Reserve 10
D13Cwr9 13 32513012 to 32513205 193 DNA segment DNA segment, Chr. 13, Case Western Reserve 9
Gm48073 13 32532919 to 32536415 3496 - lincRNA gene predicted gene, 48073