Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:30057620-31527627

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11368 13 30058677 to 30062971 4294 + lincRNA gene predicted gene 11368
Gm47259 13 30098493 to 30102042 3549 + unclassified gene predicted gene, 47259
Gm11367 13 30112474 to 30112593 119 + pseudogene predicted gene 11367
Cpgi5403 13 30136232 to 30136875 643 CpG island CpG island 5403
Tssr4028 13 30136463 to 30136491 28 + TSS region transcription start site region 4028
Mboat1 13 30136489 to 30246717 110228 + protein coding gene membrane bound O-acyltransferase domain containing 1
Tssr119074 13 30136506 to 30136527 21 + TSS region transcription start site region 119074
Tssr119075 13 30136529 to 30136594 65 + TSS region transcription start site region 119075
Tssr119076 13 30136601 to 30136610 9 + TSS region transcription start site region 119076
Tssr119077 13 30136619 to 30136630 11 + TSS region transcription start site region 119077
Tssr119078 13 30136637 to 30136650 13 + TSS region transcription start site region 119078
D13Mit79 13 30144328 to 30144450 122 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 79
Tssr119079 13 30146013 to 30146014 1 + TSS region transcription start site region 119079
Gm23206 13 30148198 to 30148381 183 - snRNA gene predicted gene, 23206
Gm40869 13 30166206 to 30177886 11680 + lncRNA gene predicted gene, 40869
Tssr119080 13 30166357 to 30166371 14 + TSS region transcription start site region 119080
Tssr119081 13 30166961 to 30166972 11 + TSS region transcription start site region 119081
Tssr119082 13 30166986 to 30167003 17 + TSS region transcription start site region 119082
Gm11366 13 30181716 to 30182144 428 + pseudogene predicted gene 11366
Gm40863 13 30231667 to 30235651 3984 - lncRNA gene predicted gene, 40863
Tssr121948 13 30235190 to 30235204 14 - TSS region transcription start site region 121948
Tssr119083 13 30245620 to 30245625 5 + TSS region transcription start site region 119083
Tssr119084 13 30331828 to 30331861 33 + TSS region transcription start site region 119084
Cpgi5404 13 30336375 to 30336817 442 CpG island CpG island 5404
Tssr119085 13 30336381 to 30336415 34 + TSS region transcription start site region 119085
Tssr119086 13 30336433 to 30336450 17 + TSS region transcription start site region 119086
Agtr1a 13 30336441 to 30382867 46426 + protein coding gene angiotensin II receptor, type 1a
Tssr119087 13 30345528 to 30345558 30 + TSS region transcription start site region 119087
Gm48161 13 30370359 to 30377183 6824 + sense intronic lncRNA gene predicted gene, 48161
Cpgi5405 13 30381142 to 30381531 389 CpG island CpG island 5405
Tssr119088 13 30381339 to 30381364 25 + TSS region transcription start site region 119088
Gm11369 13 30399617 to 30399934 317 - pseudogene predicted gene 11369
D13Dcr7 13 30519830 to 30519929 99 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 7
Tssr121949 13 30532535 to 30532566 31 - TSS region transcription start site region 121949
Uqcrfs1 13 30540312 to 30545316 5004 - protein coding gene ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
Cpgi5406 13 30544754 to 30545586 832 CpG island CpG island 5406
Tssr121950 13 30545254 to 30545346 92 - TSS region transcription start site region 121950
Tssr121951 13 30551358 to 30551381 23 - TSS region transcription start site region 121951
Tssr121952 13 30551383 to 30551388 5 - TSS region transcription start site region 121952
Tssr121953 13 30551727 to 30551731 4 - TSS region transcription start site region 121953
Gm35109 13 30611041 to 30614625 3584 - lncRNA gene predicted gene, 35109
Tssr119089 13 30614909 to 30614925 16 + TSS region transcription start site region 119089
4930519D14Rik 13 30615043 to 30624258 9215 + lincRNA gene RIKEN cDNA 4930519D14 gene
Tssr121954 13 30629953 to 30629988 35 - TSS region transcription start site region 121954
Gm35158 13 30652759 to 30659874 7115 - lncRNA gene predicted gene, 35158
Cpgi5407 13 30659438 to 30660598 1160 CpG island CpG island 5407
Tssr119090 13 30659888 to 30659941 53 + TSS region transcription start site region 119090
Tssr4029 13 30659954 to 30659977 23 + TSS region transcription start site region 4029
Tssr119091 13 30660044 to 30660116 72 + TSS region transcription start site region 119091
Dusp22 13 30660059 to 30711232 51173 + protein coding gene dual specificity phosphatase 22
Tssr121955 13 30660230 to 30660242 12 - TSS region transcription start site region 121955
Tssr121956 13 30684642 to 30684673 31 - TSS region transcription start site region 121956
Tssr119092 13 30731749 to 30731757 8 + TSS region transcription start site region 119092
Gm11370 13 30731777 to 30732036 259 + pseudogene predicted gene 11370
Tssr119093 13 30747776 to 30747805 29 + TSS region transcription start site region 119093
Tssr119094 13 30748662 to 30748685 23 + TSS region transcription start site region 119094
Tssr119095 13 30748714 to 30748721 7 + TSS region transcription start site region 119095
Cpgi5408 13 30749155 to 30749517 362 CpG island CpG island 5408
Irf4 13 30749226 to 30766976 17750 + protein coding gene interferon regulatory factor 4
Tssr119096 13 30749230 to 30749247 17 + TSS region transcription start site region 119096
Tssr121957 13 30749416 to 30749421 5 - TSS region transcription start site region 121957
Tssr119097 13 30749528 to 30749576 48 + TSS region transcription start site region 119097
Tssr119098 13 30749956 to 30749982 26 + TSS region transcription start site region 119098
Cpgi5409 13 30750155 to 30750965 810 CpG island CpG island 5409
Tssr119099 13 30750652 to 30750675 23 + TSS region transcription start site region 119099
Tssr119100 13 30751090 to 30751096 6 + TSS region transcription start site region 119100
Tssr119101 13 30751706 to 30751730 24 + TSS region transcription start site region 119101
Tssr119102 13 30752728 to 30752740 12 + TSS region transcription start site region 119102
Tssr119103 13 30753448 to 30753454 6 + TSS region transcription start site region 119103
Tssr121958 13 30753476 to 30753496 20 - TSS region transcription start site region 121958
Tssr119104 13 30753478 to 30753499 21 + TSS region transcription start site region 119104
Tssr119105 13 30757630 to 30757632 2 + TSS region transcription start site region 119105
Tssr4030 13 30760984 to 30760986 2 + TSS region transcription start site region 4030
Tssr119106 13 30761619 to 30761630 11 + TSS region transcription start site region 119106
Tssr119107 13 30761662 to 30761671 9 + TSS region transcription start site region 119107
Tssr119108 13 30764125 to 30764132 7 + TSS region transcription start site region 119108
Tssr119109 13 30764517 to 30764524 7 + TSS region transcription start site region 119109
Tssr119110 13 30764561 to 30764573 12 + TSS region transcription start site region 119110
Tssr119111 13 30764787 to 30764792 5 + TSS region transcription start site region 119111
Tssr119112 13 30764828 to 30764841 13 + TSS region transcription start site region 119112
Tssr119113 13 30764852 to 30764860 8 + TSS region transcription start site region 119113
Tssr119114 13 30764877 to 30764888 11 + TSS region transcription start site region 119114
Tssr119115 13 30766172 to 30766179 7 + TSS region transcription start site region 119115
Tssr121959 13 30781998 to 30782008 10 - TSS region transcription start site region 121959
Gm29675 13 30784433 to 30795226 10793 - lincRNA gene predicted gene, 29675
Tssr119116 13 30786368 to 30786380 12 + TSS region transcription start site region 119116
Tssr119117 13 30786396 to 30786412 16 + TSS region transcription start site region 119117
Tssr119118 13 30786509 to 30786518 9 + TSS region transcription start site region 119118
Tssr119119 13 30786537 to 30786550 13 + TSS region transcription start site region 119119
Tssr119120 13 30786567 to 30786574 7 + TSS region transcription start site region 119120
Tssr121960 13 30787673 to 30787682 9 - TSS region transcription start site region 121960
Tssr119121 13 30788126 to 30788148 22 + TSS region transcription start site region 119121
Tssr121961 13 30792206 to 30792225 19 - TSS region transcription start site region 121961
Tssr121962 13 30792250 to 30792261 11 - TSS region transcription start site region 121962
Tssr121963 13 30792264 to 30792271 7 - TSS region transcription start site region 121963
Tssr121964 13 30792297 to 30792304 7 - TSS region transcription start site region 121964
Tssr119122 13 30792620 to 30792627 7 + TSS region transcription start site region 119122
Tssr119123 13 30792636 to 30792647 11 + TSS region transcription start site region 119123
Tssr121965 13 30794018 to 30794063 45 - TSS region transcription start site region 121965
Exoc2 13 30813919 to 30974093 160174 - protein coding gene exocyst complex component 2
Tssr4031 13 30814321 to 30814328 7 - TSS region transcription start site region 4031
Tssr121966 13 30817493 to 30817504 11 - TSS region transcription start site region 121966
Tssr121967 13 30819805 to 30819810 5 - TSS region transcription start site region 121967
Tssr121968 13 30820062 to 30820071 9 - TSS region transcription start site region 121968
Tssr121969 13 30820632 to 30820643 11 - TSS region transcription start site region 121969
Tssr121970 13 30820659 to 30820669 10 - TSS region transcription start site region 121970
Tssr121971 13 30820734 to 30820739 5 - TSS region transcription start site region 121971
Tssr121972 13 30820742 to 30820760 18 - TSS region transcription start site region 121972
Tssr121973 13 30833556 to 30833567 11 - TSS region transcription start site region 121973
Tssr121974 13 30897443 to 30897456 13 - TSS region transcription start site region 121974
Hus1b 13 30946576 to 30947761 1185 - protein coding gene HUS1 checkpoint clamp component B
Cpgi5410 13 30947302 to 30947511 209 CpG island CpG island 5410
Tssr4032 13 30948934 to 30948950 16 + TSS region transcription start site region 4032
Tssr121975 13 30950314 to 30950325 11 - TSS region transcription start site region 121975
Cpgi5411 13 30973674 to 30974446 772 CpG island CpG island 5411
Tssr121976 13 30974023 to 30974047 24 - TSS region transcription start site region 121976
Tssr121977 13 30974048 to 30974098 50 - TSS region transcription start site region 121977
Tssr121978 13 30974118 to 30974127 9 - TSS region transcription start site region 121978
Gm5447 13 30974204 to 30975976 1772 + protein coding gene predicted gene 5447
Cpgi5412 13 30985511 to 30985870 359 CpG island CpG island 5412
Gm11371 13 31009177 to 31010362 1185 + pseudogene predicted gene 11371
Gm48662 13 31072730 to 31077845 5115 - lincRNA gene predicted gene, 48662
Tssr121979 13 31077452 to 31077464 12 - TSS region transcription start site region 121979
Tssr121980 13 31079873 to 31079876 3 - TSS region transcription start site region 121980
Gm35302 13 31080897 to 31084403 3506 + lncRNA gene predicted gene, 35302
Tssr119124 13 31191917 to 31191929 12 + TSS region transcription start site region 119124
Gm11372 13 31199086 to 31199655 569 + pseudogene predicted gene 11372
4930401O12Rik 13 31213410 to 31241086 27676 - lincRNA gene RIKEN cDNA 4930401O12 gene
Tssr121981 13 31241072 to 31241088 16 - TSS region transcription start site region 121981
Tssr121982 13 31241092 to 31241099 7 - TSS region transcription start site region 121982
Gm11373 13 31325934 to 31330767 4833 - lincRNA gene predicted gene 11373
G630018N14Rik 13 31349901 to 31408922 59021 - lincRNA gene RIKEN cDNA G630018N14 gene
Gm22330 13 31352980 to 31353094 114 + snoRNA gene predicted gene, 22330
Gm11376 13 31392578 to 31396579 4001 + lincRNA gene predicted gene 11376
Tssr121983 13 31399736 to 31399745 9 - TSS region transcription start site region 121983
Gm23351 13 31427255 to 31427379 124 + snoRNA gene predicted gene, 23351
Tssr121984 13 31431054 to 31431068 14 - TSS region transcription start site region 121984
Tssr121985 13 31438310 to 31438319 9 - TSS region transcription start site region 121985
Tssr121986 13 31439766 to 31439775 9 - TSS region transcription start site region 121986
Tssr121987 13 31442112 to 31442144 32 - TSS region transcription start site region 121987
D13Cwr31 13 31486433 to 31486630 197 DNA segment DNA segment, Chr. 13, Case Western Reserve 31
Brwt8 13 31495667 to 31495667 0 QTL brain weight 8