Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:29651509-31921518

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240 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdkal1 13 29191746 to 29855674 663928 - protein coding gene CDK5 regulatory subunit associated protein 1-like 1
Tssr119067 13 29653663 to 29653682 19 + TSS region transcription start site region 119067
Tssr121934 13 29654273 to 29654282 9 - TSS region transcription start site region 121934
Tssr121935 13 29654312 to 29654339 27 - TSS region transcription start site region 121935
Tssr119068 13 29664203 to 29664212 9 + TSS region transcription start site region 119068
Tssr121936 13 29690800 to 29690804 4 - TSS region transcription start site region 121936
Tssr119069 13 29745669 to 29745674 5 + TSS region transcription start site region 119069
Tssr121937 13 29748360 to 29748364 4 - TSS region transcription start site region 121937
Tssr119070 13 29757033 to 29757042 9 + TSS region transcription start site region 119070
Tssr121938 13 29855019 to 29855024 5 - TSS region transcription start site region 121938
Cpgi5401 13 29855173 to 29855716 543 CpG island CpG island 5401
Tssr121939 13 29855630 to 29855676 46 - TSS region transcription start site region 121939
D13Mit81 13 29888729 to 29888877 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 81
E2f3 13 29906575 to 29986063 79488 - protein coding gene E2F transcription factor 3
Gm11365 13 29940283 to 29942261 1978 + antisense lncRNA gene predicted gene 11365
Tssr121940 13 29944494 to 29944497 3 - TSS region transcription start site region 121940
Tssr121941 13 29947041 to 29947048 7 - TSS region transcription start site region 121941
Cpgi5402 13 29983820 to 29986439 2619 CpG island CpG island 5402
Tssr121942 13 29984204 to 29984215 11 - TSS region transcription start site region 121942
Tssr121943 13 29984224 to 29984254 30 - TSS region transcription start site region 121943
Tssr121944 13 29984299 to 29984353 54 - TSS region transcription start site region 121944
Tssr121945 13 29984411 to 29984465 54 - TSS region transcription start site region 121945
Tssr121946 13 29985978 to 29986037 59 - TSS region transcription start site region 121946
Tssr121947 13 29986048 to 29986059 11 - TSS region transcription start site region 121947
Tssr119071 13 30003372 to 30003383 11 + TSS region transcription start site region 119071
Gm40860 13 30003375 to 30035446 32071 + lncRNA gene predicted gene, 40860
Tssr119072 13 30003391 to 30003400 9 + TSS region transcription start site region 119072
Tssr119073 13 30003405 to 30003414 9 + TSS region transcription start site region 119073
D13Mit154 13 30031411 to 30031500 89 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 154
D13Dcr6 13 30057140 to 30057235 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 6
Gm11368 13 30058677 to 30062971 4294 + lincRNA gene predicted gene 11368
Gm47259 13 30098493 to 30102042 3549 + unclassified gene predicted gene, 47259
Gm11367 13 30112474 to 30112593 119 + pseudogene predicted gene 11367
Cpgi5403 13 30136232 to 30136875 643 CpG island CpG island 5403
Tssr4028 13 30136463 to 30136491 28 + TSS region transcription start site region 4028
Mboat1 13 30136489 to 30246717 110228 + protein coding gene membrane bound O-acyltransferase domain containing 1
Tssr119074 13 30136506 to 30136527 21 + TSS region transcription start site region 119074
Tssr119075 13 30136529 to 30136594 65 + TSS region transcription start site region 119075
Tssr119076 13 30136601 to 30136610 9 + TSS region transcription start site region 119076
Tssr119077 13 30136619 to 30136630 11 + TSS region transcription start site region 119077
Tssr119078 13 30136637 to 30136650 13 + TSS region transcription start site region 119078
D13Mit79 13 30144328 to 30144450 122 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 79
Tssr119079 13 30146013 to 30146014 1 + TSS region transcription start site region 119079
Gm23206 13 30148198 to 30148381 183 - snRNA gene predicted gene, 23206
Gm40869 13 30166206 to 30177886 11680 + lncRNA gene predicted gene, 40869
Tssr119080 13 30166357 to 30166371 14 + TSS region transcription start site region 119080
Tssr119081 13 30166961 to 30166972 11 + TSS region transcription start site region 119081
Tssr119082 13 30166986 to 30167003 17 + TSS region transcription start site region 119082
Gm11366 13 30181716 to 30182144 428 + pseudogene predicted gene 11366
Gm40863 13 30231667 to 30235651 3984 - lncRNA gene predicted gene, 40863
Tssr121948 13 30235190 to 30235204 14 - TSS region transcription start site region 121948
Tssr119083 13 30245620 to 30245625 5 + TSS region transcription start site region 119083
Tssr119084 13 30331828 to 30331861 33 + TSS region transcription start site region 119084
Cpgi5404 13 30336375 to 30336817 442 CpG island CpG island 5404
Tssr119085 13 30336381 to 30336415 34 + TSS region transcription start site region 119085
Tssr119086 13 30336433 to 30336450 17 + TSS region transcription start site region 119086
Agtr1a 13 30336441 to 30382867 46426 + protein coding gene angiotensin II receptor, type 1a
Tssr119087 13 30345528 to 30345558 30 + TSS region transcription start site region 119087
Gm48161 13 30370359 to 30377183 6824 + sense intronic lncRNA gene predicted gene, 48161
Cpgi5405 13 30381142 to 30381531 389 CpG island CpG island 5405
Tssr119088 13 30381339 to 30381364 25 + TSS region transcription start site region 119088
Gm11369 13 30399617 to 30399934 317 - pseudogene predicted gene 11369
D13Dcr7 13 30519830 to 30519929 99 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 7
Tssr121949 13 30532535 to 30532566 31 - TSS region transcription start site region 121949
Uqcrfs1 13 30540312 to 30545316 5004 - protein coding gene ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
Cpgi5406 13 30544754 to 30545586 832 CpG island CpG island 5406
Tssr121950 13 30545254 to 30545346 92 - TSS region transcription start site region 121950
Tssr121951 13 30551358 to 30551381 23 - TSS region transcription start site region 121951
Tssr121952 13 30551383 to 30551388 5 - TSS region transcription start site region 121952
Tssr121953 13 30551727 to 30551731 4 - TSS region transcription start site region 121953
Gm35109 13 30611041 to 30614625 3584 - lncRNA gene predicted gene, 35109
Tssr119089 13 30614909 to 30614925 16 + TSS region transcription start site region 119089
4930519D14Rik 13 30615043 to 30624258 9215 + lincRNA gene RIKEN cDNA 4930519D14 gene
Tssr121954 13 30629953 to 30629988 35 - TSS region transcription start site region 121954
Gm35158 13 30652759 to 30659874 7115 - lncRNA gene predicted gene, 35158
Cpgi5407 13 30659438 to 30660598 1160 CpG island CpG island 5407
Tssr119090 13 30659888 to 30659941 53 + TSS region transcription start site region 119090
Tssr4029 13 30659954 to 30659977 23 + TSS region transcription start site region 4029
Tssr119091 13 30660044 to 30660116 72 + TSS region transcription start site region 119091
Dusp22 13 30660059 to 30711232 51173 + protein coding gene dual specificity phosphatase 22
Tssr121955 13 30660230 to 30660242 12 - TSS region transcription start site region 121955
Tssr121956 13 30684642 to 30684673 31 - TSS region transcription start site region 121956
Tssr119092 13 30731749 to 30731757 8 + TSS region transcription start site region 119092
Gm11370 13 30731777 to 30732036 259 + pseudogene predicted gene 11370
Tssr119093 13 30747776 to 30747805 29 + TSS region transcription start site region 119093
Tssr119094 13 30748662 to 30748685 23 + TSS region transcription start site region 119094
Tssr119095 13 30748714 to 30748721 7 + TSS region transcription start site region 119095
Cpgi5408 13 30749155 to 30749517 362 CpG island CpG island 5408
Irf4 13 30749226 to 30766976 17750 + protein coding gene interferon regulatory factor 4
Tssr119096 13 30749230 to 30749247 17 + TSS region transcription start site region 119096
Tssr121957 13 30749416 to 30749421 5 - TSS region transcription start site region 121957
Tssr119097 13 30749528 to 30749576 48 + TSS region transcription start site region 119097
Tssr119098 13 30749956 to 30749982 26 + TSS region transcription start site region 119098
Cpgi5409 13 30750155 to 30750965 810 CpG island CpG island 5409
Tssr119099 13 30750652 to 30750675 23 + TSS region transcription start site region 119099
Tssr119100 13 30751090 to 30751096 6 + TSS region transcription start site region 119100
Tssr119101 13 30751706 to 30751730 24 + TSS region transcription start site region 119101
Tssr119102 13 30752728 to 30752740 12 + TSS region transcription start site region 119102
Tssr119103 13 30753448 to 30753454 6 + TSS region transcription start site region 119103
Tssr121958 13 30753476 to 30753496 20 - TSS region transcription start site region 121958
Tssr119104 13 30753478 to 30753499 21 + TSS region transcription start site region 119104
Tssr119105 13 30757630 to 30757632 2 + TSS region transcription start site region 119105
Tssr4030 13 30760984 to 30760986 2 + TSS region transcription start site region 4030
Tssr119106 13 30761619 to 30761630 11 + TSS region transcription start site region 119106
Tssr119107 13 30761662 to 30761671 9 + TSS region transcription start site region 119107
Tssr119108 13 30764125 to 30764132 7 + TSS region transcription start site region 119108
Tssr119109 13 30764517 to 30764524 7 + TSS region transcription start site region 119109
Tssr119110 13 30764561 to 30764573 12 + TSS region transcription start site region 119110
Tssr119111 13 30764787 to 30764792 5 + TSS region transcription start site region 119111
Tssr119112 13 30764828 to 30764841 13 + TSS region transcription start site region 119112
Tssr119113 13 30764852 to 30764860 8 + TSS region transcription start site region 119113
Tssr119114 13 30764877 to 30764888 11 + TSS region transcription start site region 119114
Tssr119115 13 30766172 to 30766179 7 + TSS region transcription start site region 119115
Tssr121959 13 30781998 to 30782008 10 - TSS region transcription start site region 121959
Gm29675 13 30784433 to 30795226 10793 - lincRNA gene predicted gene, 29675
Tssr119116 13 30786368 to 30786380 12 + TSS region transcription start site region 119116
Tssr119117 13 30786396 to 30786412 16 + TSS region transcription start site region 119117
Tssr119118 13 30786509 to 30786518 9 + TSS region transcription start site region 119118
Tssr119119 13 30786537 to 30786550 13 + TSS region transcription start site region 119119
Tssr119120 13 30786567 to 30786574 7 + TSS region transcription start site region 119120
Tssr121960 13 30787673 to 30787682 9 - TSS region transcription start site region 121960
Tssr119121 13 30788126 to 30788148 22 + TSS region transcription start site region 119121
Tssr121961 13 30792206 to 30792225 19 - TSS region transcription start site region 121961
Tssr121962 13 30792250 to 30792261 11 - TSS region transcription start site region 121962
Tssr121963 13 30792264 to 30792271 7 - TSS region transcription start site region 121963
Tssr121964 13 30792297 to 30792304 7 - TSS region transcription start site region 121964
Tssr119122 13 30792620 to 30792627 7 + TSS region transcription start site region 119122
Tssr119123 13 30792636 to 30792647 11 + TSS region transcription start site region 119123
Tssr121965 13 30794018 to 30794063 45 - TSS region transcription start site region 121965
Exoc2 13 30813919 to 30974093 160174 - protein coding gene exocyst complex component 2
Tssr4031 13 30814321 to 30814328 7 - TSS region transcription start site region 4031
Tssr121966 13 30817493 to 30817504 11 - TSS region transcription start site region 121966
Tssr121967 13 30819805 to 30819810 5 - TSS region transcription start site region 121967
Tssr121968 13 30820062 to 30820071 9 - TSS region transcription start site region 121968
Tssr121969 13 30820632 to 30820643 11 - TSS region transcription start site region 121969
Tssr121970 13 30820659 to 30820669 10 - TSS region transcription start site region 121970
Tssr121971 13 30820734 to 30820739 5 - TSS region transcription start site region 121971
Tssr121972 13 30820742 to 30820760 18 - TSS region transcription start site region 121972
Tssr121973 13 30833556 to 30833567 11 - TSS region transcription start site region 121973
Tssr121974 13 30897443 to 30897456 13 - TSS region transcription start site region 121974
Hus1b 13 30946576 to 30947761 1185 - protein coding gene HUS1 checkpoint clamp component B
Cpgi5410 13 30947302 to 30947511 209 CpG island CpG island 5410
Tssr4032 13 30948934 to 30948950 16 + TSS region transcription start site region 4032
Tssr121975 13 30950314 to 30950325 11 - TSS region transcription start site region 121975
Cpgi5411 13 30973674 to 30974446 772 CpG island CpG island 5411
Tssr121976 13 30974023 to 30974047 24 - TSS region transcription start site region 121976
Tssr121977 13 30974048 to 30974098 50 - TSS region transcription start site region 121977
Tssr121978 13 30974118 to 30974127 9 - TSS region transcription start site region 121978
Gm5447 13 30974204 to 30975976 1772 + protein coding gene predicted gene 5447
Cpgi5412 13 30985511 to 30985870 359 CpG island CpG island 5412
Gm11371 13 31009177 to 31010362 1185 + pseudogene predicted gene 11371
Gm48662 13 31072730 to 31077845 5115 - lincRNA gene predicted gene, 48662
Tssr121979 13 31077452 to 31077464 12 - TSS region transcription start site region 121979
Tssr121980 13 31079873 to 31079876 3 - TSS region transcription start site region 121980
Gm35302 13 31080897 to 31084403 3506 + lncRNA gene predicted gene, 35302
Tssr119124 13 31191917 to 31191929 12 + TSS region transcription start site region 119124
Gm11372 13 31199086 to 31199655 569 + pseudogene predicted gene 11372
4930401O12Rik 13 31213410 to 31241086 27676 - lincRNA gene RIKEN cDNA 4930401O12 gene
Tssr121981 13 31241072 to 31241088 16 - TSS region transcription start site region 121981
Tssr121982 13 31241092 to 31241099 7 - TSS region transcription start site region 121982
Gm11373 13 31325934 to 31330767 4833 - lincRNA gene predicted gene 11373
G630018N14Rik 13 31349901 to 31408922 59021 - lincRNA gene RIKEN cDNA G630018N14 gene
Gm22330 13 31352980 to 31353094 114 + snoRNA gene predicted gene, 22330
Gm11376 13 31392578 to 31396579 4001 + lincRNA gene predicted gene 11376
Tssr121983 13 31399736 to 31399745 9 - TSS region transcription start site region 121983
Gm23351 13 31427255 to 31427379 124 + snoRNA gene predicted gene, 23351
Tssr121984 13 31431054 to 31431068 14 - TSS region transcription start site region 121984
Tssr121985 13 31438310 to 31438319 9 - TSS region transcription start site region 121985
Tssr121986 13 31439766 to 31439775 9 - TSS region transcription start site region 121986
Tssr121987 13 31442112 to 31442144 32 - TSS region transcription start site region 121987
D13Cwr31 13 31486433 to 31486630 197 DNA segment DNA segment, Chr. 13, Case Western Reserve 31
Brwt8 13 31495667 to 31495667 0 QTL brain weight 8
A530084C06Rik 13 31556134 to 31559333 3199 - protein coding gene RIKEN cDNA A530084C06 gene
Cpgi5413 13 31557501 to 31560221 2720 CpG island CpG island 5413
Tssr119125 13 31558157 to 31558176 19 + TSS region transcription start site region 119125
Foxq1 13 31558170 to 31560976 2806 + protein coding gene forkhead box Q1
Tssr119126 13 31558316 to 31558332 16 + TSS region transcription start site region 119126
Gm11377 13 31564749 to 31573562 8813 + lincRNA gene predicted gene 11377
1700018A04Rik 13 31565492 to 31582513 17021 - lincRNA gene RIKEN cDNA 1700018A04 gene
Tssr121988 13 31582499 to 31582518 19 - TSS region transcription start site region 121988
D13Dcr2 13 31610551 to 31610646 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 2
Cpgi5414 13 31614698 to 31615480 782 CpG island CpG island 5414
Cpgi5415 13 31619071 to 31619313 242 CpG island CpG island 5415
Gm11378 13 31619168 to 31620369 1201 + lincRNA gene predicted gene 11378
Cpgi5416 13 31620138 to 31620739 601 CpG island CpG island 5416
Cpgi5417 13 31624958 to 31627327 2369 CpG island CpG island 5417
Tssr4033 13 31625485 to 31625498 13 - TSS region transcription start site region 4033
Tssr121989 13 31625549 to 31625564 15 - TSS region transcription start site region 121989
Tssr119127 13 31625679 to 31625727 48 + TSS region transcription start site region 119127
Tssr119128 13 31625728 to 31625744 16 + TSS region transcription start site region 119128
Tssr119129 13 31625745 to 31625759 14 + TSS region transcription start site region 119129
Tssr119130 13 31625793 to 31625800 7 + TSS region transcription start site region 119130
Tssr119131 13 31625802 to 31625813 11 + TSS region transcription start site region 119131
Foxf2 13 31625816 to 31631403 5587 + protein coding gene forkhead box F2
Tssr119132 13 31625906 to 31625919 13 + TSS region transcription start site region 119132
Gm27516 13 31626446 to 31626543 97 - miRNA gene predicted gene, 27516
Cpgi5418 13 31628993 to 31630155 1162 CpG island CpG island 5418
D13Cwr30 13 31632616 to 31632723 107 DNA segment DNA segment, Chr. 13, Case Western Reserve 30
Tssr121990 13 31674435 to 31674441 6 - TSS region transcription start site region 121990
Tssr121991 13 31681455 to 31681482 27 - TSS region transcription start site region 121991