Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:29251575-30641063

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdkal1 13 29191746 to 29855674 663928 - protein coding gene CDK5 regulatory subunit associated protein 1-like 1
Tssr121931 13 29325710 to 29325724 14 - TSS region transcription start site region 121931
Tssr121932 13 29357674 to 29357695 21 - TSS region transcription start site region 121932
Tssr121933 13 29431246 to 29431250 4 - TSS region transcription start site region 121933
D13Mit206 13 29636957 to 29637096 139 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 206
Tssr119067 13 29653663 to 29653682 19 + TSS region transcription start site region 119067
Tssr121934 13 29654273 to 29654282 9 - TSS region transcription start site region 121934
Tssr121935 13 29654312 to 29654339 27 - TSS region transcription start site region 121935
Tssr119068 13 29664203 to 29664212 9 + TSS region transcription start site region 119068
Tssr121936 13 29690800 to 29690804 4 - TSS region transcription start site region 121936
Tssr119069 13 29745669 to 29745674 5 + TSS region transcription start site region 119069
Tssr121937 13 29748360 to 29748364 4 - TSS region transcription start site region 121937
Tssr119070 13 29757033 to 29757042 9 + TSS region transcription start site region 119070
Tssr121938 13 29855019 to 29855024 5 - TSS region transcription start site region 121938
Cpgi5401 13 29855173 to 29855716 543 CpG island CpG island 5401
Tssr121939 13 29855630 to 29855676 46 - TSS region transcription start site region 121939
D13Mit81 13 29888729 to 29888877 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 81
E2f3 13 29906575 to 29986063 79488 - protein coding gene E2F transcription factor 3
Gm11365 13 29940283 to 29942261 1978 + antisense lncRNA gene predicted gene 11365
Tssr121940 13 29944494 to 29944497 3 - TSS region transcription start site region 121940
Tssr121941 13 29947041 to 29947048 7 - TSS region transcription start site region 121941
Cpgi5402 13 29983820 to 29986439 2619 CpG island CpG island 5402
Tssr121942 13 29984204 to 29984215 11 - TSS region transcription start site region 121942
Tssr121943 13 29984224 to 29984254 30 - TSS region transcription start site region 121943
Tssr121944 13 29984299 to 29984353 54 - TSS region transcription start site region 121944
Tssr121945 13 29984411 to 29984465 54 - TSS region transcription start site region 121945
Tssr121946 13 29985978 to 29986037 59 - TSS region transcription start site region 121946
Tssr121947 13 29986048 to 29986059 11 - TSS region transcription start site region 121947
Tssr119071 13 30003372 to 30003383 11 + TSS region transcription start site region 119071
Gm40860 13 30003375 to 30035446 32071 + lncRNA gene predicted gene, 40860
Tssr119072 13 30003391 to 30003400 9 + TSS region transcription start site region 119072
Tssr119073 13 30003405 to 30003414 9 + TSS region transcription start site region 119073
D13Mit154 13 30031411 to 30031500 89 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 154
D13Dcr6 13 30057140 to 30057235 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 6
Gm11368 13 30058677 to 30062971 4294 + lincRNA gene predicted gene 11368
Gm47259 13 30098493 to 30102042 3549 + unclassified gene predicted gene, 47259
Gm11367 13 30112474 to 30112593 119 + pseudogene predicted gene 11367
Cpgi5403 13 30136232 to 30136875 643 CpG island CpG island 5403
Tssr4028 13 30136463 to 30136491 28 + TSS region transcription start site region 4028
Mboat1 13 30136489 to 30246717 110228 + protein coding gene membrane bound O-acyltransferase domain containing 1
Tssr119074 13 30136506 to 30136527 21 + TSS region transcription start site region 119074
Tssr119075 13 30136529 to 30136594 65 + TSS region transcription start site region 119075
Tssr119076 13 30136601 to 30136610 9 + TSS region transcription start site region 119076
Tssr119077 13 30136619 to 30136630 11 + TSS region transcription start site region 119077
Tssr119078 13 30136637 to 30136650 13 + TSS region transcription start site region 119078
D13Mit79 13 30144328 to 30144450 122 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 79
Tssr119079 13 30146013 to 30146014 1 + TSS region transcription start site region 119079
Gm23206 13 30148198 to 30148381 183 - snRNA gene predicted gene, 23206
Gm40869 13 30166206 to 30177886 11680 + lncRNA gene predicted gene, 40869
Tssr119080 13 30166357 to 30166371 14 + TSS region transcription start site region 119080
Tssr119081 13 30166961 to 30166972 11 + TSS region transcription start site region 119081
Tssr119082 13 30166986 to 30167003 17 + TSS region transcription start site region 119082
Gm11366 13 30181716 to 30182144 428 + pseudogene predicted gene 11366
Gm40863 13 30231667 to 30235651 3984 - lncRNA gene predicted gene, 40863
Tssr121948 13 30235190 to 30235204 14 - TSS region transcription start site region 121948
Tssr119083 13 30245620 to 30245625 5 + TSS region transcription start site region 119083
Tssr119084 13 30331828 to 30331861 33 + TSS region transcription start site region 119084
Cpgi5404 13 30336375 to 30336817 442 CpG island CpG island 5404
Tssr119085 13 30336381 to 30336415 34 + TSS region transcription start site region 119085
Tssr119086 13 30336433 to 30336450 17 + TSS region transcription start site region 119086
Agtr1a 13 30336441 to 30382867 46426 + protein coding gene angiotensin II receptor, type 1a
Tssr119087 13 30345528 to 30345558 30 + TSS region transcription start site region 119087
Gm48161 13 30370359 to 30377183 6824 + sense intronic lncRNA gene predicted gene, 48161
Cpgi5405 13 30381142 to 30381531 389 CpG island CpG island 5405
Tssr119088 13 30381339 to 30381364 25 + TSS region transcription start site region 119088
Gm11369 13 30399617 to 30399934 317 - pseudogene predicted gene 11369
D13Dcr7 13 30519830 to 30519929 99 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 7
Tssr121949 13 30532535 to 30532566 31 - TSS region transcription start site region 121949
Uqcrfs1 13 30540312 to 30545316 5004 - protein coding gene ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
Cpgi5406 13 30544754 to 30545586 832 CpG island CpG island 5406
Tssr121950 13 30545254 to 30545346 92 - TSS region transcription start site region 121950
Tssr121951 13 30551358 to 30551381 23 - TSS region transcription start site region 121951
Tssr121952 13 30551383 to 30551388 5 - TSS region transcription start site region 121952
Tssr121953 13 30551727 to 30551731 4 - TSS region transcription start site region 121953
Gm35109 13 30611041 to 30614625 3584 - lncRNA gene predicted gene, 35109
Tssr119089 13 30614909 to 30614925 16 + TSS region transcription start site region 119089
4930519D14Rik 13 30615043 to 30624258 9215 + lincRNA gene RIKEN cDNA 4930519D14 gene
Tssr121954 13 30629953 to 30629988 35 - TSS region transcription start site region 121954