Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:28976746-30070674

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr119063 13 29014305 to 29014324 19 + TSS region transcription start site region 119063
Tssr119064 13 29014406 to 29014411 5 + TSS region transcription start site region 119064
A330102I10Rik 13 29014414 to 29040336 25922 + lincRNA gene RIKEN cDNA A330102I10 gene
Cpgi5400 13 29016163 to 29016327 164 CpG island CpG island 5400
Tssr119065 13 29016267 to 29016303 36 + TSS region transcription start site region 119065
D13Mit83 13 29053566 to 29053689 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 83
D13Mit82 13 29087579 to 29087728 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 82
Gm11363 13 29130211 to 29130758 547 - pseudogene predicted gene 11363
Tssr4027 13 29151995 to 29152000 5 + TSS region transcription start site region 4027
Tssr119066 13 29172553 to 29172555 2 + TSS region transcription start site region 119066
Cdkal1 13 29191746 to 29855674 663928 - protein coding gene CDK5 regulatory subunit associated protein 1-like 1
D13Mit86 13 29235622 to 29235746 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 86
Gm11364 13 29235777 to 29236620 843 - sense intronic lncRNA gene predicted gene 11364
Tssr121931 13 29325710 to 29325724 14 - TSS region transcription start site region 121931
Tssr121932 13 29357674 to 29357695 21 - TSS region transcription start site region 121932
Tssr121933 13 29431246 to 29431250 4 - TSS region transcription start site region 121933
D13Mit206 13 29636957 to 29637096 139 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 206
Tssr119067 13 29653663 to 29653682 19 + TSS region transcription start site region 119067
Tssr121934 13 29654273 to 29654282 9 - TSS region transcription start site region 121934
Tssr121935 13 29654312 to 29654339 27 - TSS region transcription start site region 121935
Tssr119068 13 29664203 to 29664212 9 + TSS region transcription start site region 119068
Tssr121936 13 29690800 to 29690804 4 - TSS region transcription start site region 121936
Tssr119069 13 29745669 to 29745674 5 + TSS region transcription start site region 119069
Tssr121937 13 29748360 to 29748364 4 - TSS region transcription start site region 121937
Tssr119070 13 29757033 to 29757042 9 + TSS region transcription start site region 119070
Tssr121938 13 29855019 to 29855024 5 - TSS region transcription start site region 121938
Cpgi5401 13 29855173 to 29855716 543 CpG island CpG island 5401
Tssr121939 13 29855630 to 29855676 46 - TSS region transcription start site region 121939
D13Mit81 13 29888729 to 29888877 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 81
E2f3 13 29906575 to 29986063 79488 - protein coding gene E2F transcription factor 3
Gm11365 13 29940283 to 29942261 1978 + antisense lncRNA gene predicted gene 11365
Tssr121940 13 29944494 to 29944497 3 - TSS region transcription start site region 121940
Tssr121941 13 29947041 to 29947048 7 - TSS region transcription start site region 121941
Cpgi5402 13 29983820 to 29986439 2619 CpG island CpG island 5402
Tssr121942 13 29984204 to 29984215 11 - TSS region transcription start site region 121942
Tssr121943 13 29984224 to 29984254 30 - TSS region transcription start site region 121943
Tssr121944 13 29984299 to 29984353 54 - TSS region transcription start site region 121944
Tssr121945 13 29984411 to 29984465 54 - TSS region transcription start site region 121945
Tssr121946 13 29985978 to 29986037 59 - TSS region transcription start site region 121946
Tssr121947 13 29986048 to 29986059 11 - TSS region transcription start site region 121947
Tssr119071 13 30003372 to 30003383 11 + TSS region transcription start site region 119071
Gm40860 13 30003375 to 30035446 32071 + lncRNA gene predicted gene, 40860
Tssr119072 13 30003391 to 30003400 9 + TSS region transcription start site region 119072
Tssr119073 13 30003405 to 30003414 9 + TSS region transcription start site region 119073
D13Mit154 13 30031411 to 30031500 89 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 154
D13Dcr6 13 30057140 to 30057235 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 6
Gm11368 13 30058677 to 30062971 4294 + lincRNA gene predicted gene 11368