Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:28950710-29700724

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26735 13 28943048 to 28951671 8623 + lincRNA gene predicted gene, 26735
Gm46405 13 28945177 to 28959261 14084 - lncRNA gene predicted gene, 46405
Sox4 13 28950716 to 28953682 2966 - protein coding gene SRY (sex determining region Y)-box 4
Tssr121916 13 28950762 to 28950786 24 - TSS region transcription start site region 121916
Cpgi5398 13 28951412 to 28953984 2572 CpG island CpG island 5398
Tssr119058 13 28951436 to 28951477 41 + TSS region transcription start site region 119058
Tssr121917 13 28951439 to 28951452 13 - TSS region transcription start site region 121917
Tssr119059 13 28951520 to 28951541 21 + TSS region transcription start site region 119059
Tssr119060 13 28951566 to 28951577 11 + TSS region transcription start site region 119060
Tssr119061 13 28951644 to 28951648 4 + TSS region transcription start site region 119061
Tssr121918 13 28951667 to 28951687 20 - TSS region transcription start site region 121918
Tssr121919 13 28951854 to 28951868 14 - TSS region transcription start site region 121919
Tssr121920 13 28952566 to 28952573 7 - TSS region transcription start site region 121920
Tssr121921 13 28952879 to 28952897 18 - TSS region transcription start site region 121921
Tssr121922 13 28953006 to 28953059 53 - TSS region transcription start site region 121922
Tssr121923 13 28953262 to 28953290 28 - TSS region transcription start site region 121923
Tssr121924 13 28953305 to 28953319 14 - TSS region transcription start site region 121924
Tssr121925 13 28953383 to 28953402 19 - TSS region transcription start site region 121925
Tssr121926 13 28953405 to 28953424 19 - TSS region transcription start site region 121926
Tssr121927 13 28953427 to 28953438 11 - TSS region transcription start site region 121927
Tssr121928 13 28953439 to 28953449 10 - TSS region transcription start site region 121928
Tssr121929 13 28953452 to 28953468 16 - TSS region transcription start site region 121929
Tssr121930 13 28953690 to 28953705 15 - TSS region transcription start site region 121930
Tssr119062 13 28953914 to 28953920 6 + TSS region transcription start site region 119062
Cpgi5399 13 28957924 to 28959942 2018 CpG island CpG island 5399
Tssr119063 13 29014305 to 29014324 19 + TSS region transcription start site region 119063
Tssr119064 13 29014406 to 29014411 5 + TSS region transcription start site region 119064
A330102I10Rik 13 29014414 to 29040336 25922 + lincRNA gene RIKEN cDNA A330102I10 gene
Cpgi5400 13 29016163 to 29016327 164 CpG island CpG island 5400
Tssr119065 13 29016267 to 29016303 36 + TSS region transcription start site region 119065
D13Mit83 13 29053566 to 29053689 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 83
D13Mit82 13 29087579 to 29087728 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 82
Gm11363 13 29130211 to 29130758 547 - pseudogene predicted gene 11363
Tssr4027 13 29151995 to 29152000 5 + TSS region transcription start site region 4027
Tssr119066 13 29172553 to 29172555 2 + TSS region transcription start site region 119066
Cdkal1 13 29191746 to 29855674 663928 - protein coding gene CDK5 regulatory subunit associated protein 1-like 1
D13Mit86 13 29235622 to 29235746 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 86
Gm11364 13 29235777 to 29236620 843 - sense intronic lncRNA gene predicted gene 11364
Tssr121931 13 29325710 to 29325724 14 - TSS region transcription start site region 121931
Tssr121932 13 29357674 to 29357695 21 - TSS region transcription start site region 121932
Tssr121933 13 29431246 to 29431250 4 - TSS region transcription start site region 121933
D13Mit206 13 29636957 to 29637096 139 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 206
Tssr119067 13 29653663 to 29653682 19 + TSS region transcription start site region 119067
Tssr121934 13 29654273 to 29654282 9 - TSS region transcription start site region 121934
Tssr121935 13 29654312 to 29654339 27 - TSS region transcription start site region 121935
Tssr119068 13 29664203 to 29664212 9 + TSS region transcription start site region 119068
Tssr121936 13 29690800 to 29690804 4 - TSS region transcription start site region 121936