Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:28809554-28978671

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2610307P16Rik 13 28460034 to 28885422 425388 - lncRNA gene RIKEN cDNA 2610307P16 gene
Tssr121890 13 28809690 to 28809694 4 - TSS region transcription start site region 121890
Tssr121891 13 28817613 to 28817616 3 - TSS region transcription start site region 121891
Gm17528 13 28827123 to 28827362 239 + pseudogene predicted gene, 17528
Tssr121892 13 28836089 to 28836094 5 - TSS region transcription start site region 121892
Gm11362 13 28836875 to 28837724 849 + pseudogene predicted gene 11362
Tssr119055 13 28839390 to 28839398 8 + TSS region transcription start site region 119055
5930430O07Rik 13 28860704 to 28863845 3141 unclassified gene RIKEN cDNA 5930430O07 gene
Tssr119056 13 28874292 to 28874296 4 + TSS region transcription start site region 119056
Cpgi5395 13 28884152 to 28884440 288 CpG island CpG island 5395
Tssr121893 13 28884219 to 28884244 25 - TSS region transcription start site region 121893
Tssr121894 13 28884252 to 28884306 54 - TSS region transcription start site region 121894
Tssr121895 13 28884682 to 28884691 9 - TSS region transcription start site region 121895
Cpgi5396 13 28885040 to 28885329 289 CpG island CpG island 5396
Tssr121896 13 28885288 to 28885320 32 - TSS region transcription start site region 121896
Tssr121897 13 28885334 to 28885382 48 - TSS region transcription start site region 121897
Tssr121898 13 28885616 to 28885633 17 - TSS region transcription start site region 121898
Gm34639 13 28889554 to 28898671 9117 - lincRNA gene predicted gene, 34639
Tssr4025 13 28901858 to 28901861 3 + TSS region transcription start site region 4025
Gm34697 13 28905604 to 28909600 3996 - lncRNA gene predicted gene, 34697
Cpgi5397 13 28909489 to 28909797 308 CpG island CpG island 5397
Tssr119057 13 28912025 to 28912026 1 + TSS region transcription start site region 119057
Gm40858 13 28912736 to 28916770 4034 - lncRNA gene predicted gene, 40858
Gm26735 13 28943048 to 28951671 8623 + lincRNA gene predicted gene, 26735
Gm46405 13 28945177 to 28959261 14084 - lncRNA gene predicted gene, 46405
Gm46406 13 28945388 to 28948106 2718 + lncRNA gene predicted gene, 46406
Tssr121899 13 28949136 to 28949147 11 - TSS region transcription start site region 121899
Tssr121900 13 28949151 to 28949172 21 - TSS region transcription start site region 121900
Tssr121901 13 28949380 to 28949392 12 - TSS region transcription start site region 121901
Tssr121902 13 28949581 to 28949593 12 - TSS region transcription start site region 121902
Tssr121903 13 28950021 to 28950030 9 - TSS region transcription start site region 121903
Tssr121904 13 28950062 to 28950078 16 - TSS region transcription start site region 121904
Tssr121905 13 28950124 to 28950135 11 - TSS region transcription start site region 121905
Tssr121906 13 28950151 to 28950162 11 - TSS region transcription start site region 121906
Tssr121907 13 28950181 to 28950218 37 - TSS region transcription start site region 121907
Tssr121908 13 28950238 to 28950249 11 - TSS region transcription start site region 121908
Tssr121909 13 28950274 to 28950298 24 - TSS region transcription start site region 121909
Tssr121910 13 28950312 to 28950326 14 - TSS region transcription start site region 121910
Tssr4026 13 28950331 to 28950334 3 - TSS region transcription start site region 4026
Tssr121911 13 28950340 to 28950351 11 - TSS region transcription start site region 121911
Tssr121912 13 28950449 to 28950476 27 - TSS region transcription start site region 121912
Tssr121913 13 28950505 to 28950512 7 - TSS region transcription start site region 121913
Tssr121914 13 28950557 to 28950572 15 - TSS region transcription start site region 121914
Tssr121915 13 28950608 to 28950615 7 - TSS region transcription start site region 121915
Sox4 13 28950716 to 28953682 2966 - protein coding gene SRY (sex determining region Y)-box 4
Tssr121916 13 28950762 to 28950786 24 - TSS region transcription start site region 121916
Cpgi5398 13 28951412 to 28953984 2572 CpG island CpG island 5398
Tssr119058 13 28951436 to 28951477 41 + TSS region transcription start site region 119058
Tssr121917 13 28951439 to 28951452 13 - TSS region transcription start site region 121917
Tssr119059 13 28951520 to 28951541 21 + TSS region transcription start site region 119059
Tssr119060 13 28951566 to 28951577 11 + TSS region transcription start site region 119060
Tssr119061 13 28951644 to 28951648 4 + TSS region transcription start site region 119061
Tssr121918 13 28951667 to 28951687 20 - TSS region transcription start site region 121918
Tssr121919 13 28951854 to 28951868 14 - TSS region transcription start site region 121919
Tssr121920 13 28952566 to 28952573 7 - TSS region transcription start site region 121920
Tssr121921 13 28952879 to 28952897 18 - TSS region transcription start site region 121921
Tssr121922 13 28953006 to 28953059 53 - TSS region transcription start site region 121922
Tssr121923 13 28953262 to 28953290 28 - TSS region transcription start site region 121923
Tssr121924 13 28953305 to 28953319 14 - TSS region transcription start site region 121924
Tssr121925 13 28953383 to 28953402 19 - TSS region transcription start site region 121925
Tssr121926 13 28953405 to 28953424 19 - TSS region transcription start site region 121926
Tssr121927 13 28953427 to 28953438 11 - TSS region transcription start site region 121927
Tssr121928 13 28953439 to 28953449 10 - TSS region transcription start site region 121928
Tssr121929 13 28953452 to 28953468 16 - TSS region transcription start site region 121929
Tssr121930 13 28953690 to 28953705 15 - TSS region transcription start site region 121930
Tssr119062 13 28953914 to 28953920 6 + TSS region transcription start site region 119062
Cpgi5399 13 28957924 to 28959942 2018 CpG island CpG island 5399