Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:28429554-29358671

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr121875 13 28450505 to 28450510 5 - TSS region transcription start site region 121875
2610307P16Rik 13 28460034 to 28885422 425388 - lncRNA gene RIKEN cDNA 2610307P16 gene
Gm6081 13 28510744 to 28511232 488 - pseudogene predicted gene 6081
Tssr121876 13 28519680 to 28519684 4 - TSS region transcription start site region 121876
Tssr121877 13 28523166 to 28523169 3 - TSS region transcription start site region 121877
E130104P22Rik 13 28529801 to 28533402 3601 unclassified gene RIKEN cDNA E130104P22 gene
Tssr4024 13 28532499 to 28532502 3 + TSS region transcription start site region 4024
Tssr121878 13 28537693 to 28537697 4 - TSS region transcription start site region 121878
Tssr121879 13 28538412 to 28538414 2 - TSS region transcription start site region 121879
Tssr121880 13 28554868 to 28554914 46 - TSS region transcription start site region 121880
Tssr119054 13 28575744 to 28575748 4 + TSS region transcription start site region 119054
Tssr121881 13 28650140 to 28650146 6 - TSS region transcription start site region 121881
Tssr121882 13 28652702 to 28652706 4 - TSS region transcription start site region 121882
Tssr121883 13 28663379 to 28663383 4 - TSS region transcription start site region 121883
Mir6368 13 28710781 to 28710873 92 - miRNA gene microRNA 6368
Tssr121884 13 28718800 to 28718805 5 - TSS region transcription start site region 121884
2610304O13Rik 13 28725909 to 28726347 438 unclassified gene RIKEN cDNA 2610304O13 gene
Tssr121885 13 28757617 to 28757642 25 - TSS region transcription start site region 121885
Tssr121886 13 28757853 to 28757869 16 - TSS region transcription start site region 121886
Tssr121887 13 28757876 to 28757887 11 - TSS region transcription start site region 121887
9430081I23Rik 13 28769606 to 28772198 2592 unclassified gene RIKEN cDNA 9430081I23 gene
Tssr121888 13 28772176 to 28772181 5 - TSS region transcription start site region 121888
Tssr121889 13 28784314 to 28784319 5 - TSS region transcription start site region 121889
Tssr121890 13 28809690 to 28809694 4 - TSS region transcription start site region 121890
Tssr121891 13 28817613 to 28817616 3 - TSS region transcription start site region 121891
Gm17528 13 28827123 to 28827362 239 + pseudogene predicted gene, 17528
Tssr121892 13 28836089 to 28836094 5 - TSS region transcription start site region 121892
Gm11362 13 28836875 to 28837724 849 + pseudogene predicted gene 11362
Tssr119055 13 28839390 to 28839398 8 + TSS region transcription start site region 119055
5930430O07Rik 13 28860704 to 28863845 3141 unclassified gene RIKEN cDNA 5930430O07 gene
Tssr119056 13 28874292 to 28874296 4 + TSS region transcription start site region 119056
Cpgi5395 13 28884152 to 28884440 288 CpG island CpG island 5395
Tssr121893 13 28884219 to 28884244 25 - TSS region transcription start site region 121893
Tssr121894 13 28884252 to 28884306 54 - TSS region transcription start site region 121894
Tssr121895 13 28884682 to 28884691 9 - TSS region transcription start site region 121895
Cpgi5396 13 28885040 to 28885329 289 CpG island CpG island 5396
Tssr121896 13 28885288 to 28885320 32 - TSS region transcription start site region 121896
Tssr121897 13 28885334 to 28885382 48 - TSS region transcription start site region 121897
Tssr121898 13 28885616 to 28885633 17 - TSS region transcription start site region 121898
Gm34639 13 28889554 to 28898671 9117 - lincRNA gene predicted gene, 34639
Tssr4025 13 28901858 to 28901861 3 + TSS region transcription start site region 4025
Gm34697 13 28905604 to 28909600 3996 - lncRNA gene predicted gene, 34697
Cpgi5397 13 28909489 to 28909797 308 CpG island CpG island 5397
Tssr119057 13 28912025 to 28912026 1 + TSS region transcription start site region 119057
Gm40858 13 28912736 to 28916770 4034 - lncRNA gene predicted gene, 40858
Gm26735 13 28943048 to 28951671 8623 + lincRNA gene predicted gene, 26735
Gm46405 13 28945177 to 28959261 14084 - lncRNA gene predicted gene, 46405
Gm46406 13 28945388 to 28948106 2718 + lncRNA gene predicted gene, 46406
Tssr121899 13 28949136 to 28949147 11 - TSS region transcription start site region 121899
Tssr121900 13 28949151 to 28949172 21 - TSS region transcription start site region 121900
Tssr121901 13 28949380 to 28949392 12 - TSS region transcription start site region 121901
Tssr121902 13 28949581 to 28949593 12 - TSS region transcription start site region 121902
Tssr121903 13 28950021 to 28950030 9 - TSS region transcription start site region 121903
Tssr121904 13 28950062 to 28950078 16 - TSS region transcription start site region 121904
Tssr121905 13 28950124 to 28950135 11 - TSS region transcription start site region 121905
Tssr121906 13 28950151 to 28950162 11 - TSS region transcription start site region 121906
Tssr121907 13 28950181 to 28950218 37 - TSS region transcription start site region 121907
Tssr121908 13 28950238 to 28950249 11 - TSS region transcription start site region 121908
Tssr121909 13 28950274 to 28950298 24 - TSS region transcription start site region 121909
Tssr121910 13 28950312 to 28950326 14 - TSS region transcription start site region 121910
Tssr4026 13 28950331 to 28950334 3 - TSS region transcription start site region 4026
Tssr121911 13 28950340 to 28950351 11 - TSS region transcription start site region 121911
Tssr121912 13 28950449 to 28950476 27 - TSS region transcription start site region 121912
Tssr121913 13 28950505 to 28950512 7 - TSS region transcription start site region 121913
Tssr121914 13 28950557 to 28950572 15 - TSS region transcription start site region 121914
Tssr121915 13 28950608 to 28950615 7 - TSS region transcription start site region 121915
Sox4 13 28950716 to 28953682 2966 - protein coding gene SRY (sex determining region Y)-box 4
Tssr121916 13 28950762 to 28950786 24 - TSS region transcription start site region 121916
Cpgi5398 13 28951412 to 28953984 2572 CpG island CpG island 5398
Tssr119058 13 28951436 to 28951477 41 + TSS region transcription start site region 119058
Tssr121917 13 28951439 to 28951452 13 - TSS region transcription start site region 121917
Tssr119059 13 28951520 to 28951541 21 + TSS region transcription start site region 119059
Tssr119060 13 28951566 to 28951577 11 + TSS region transcription start site region 119060
Tssr119061 13 28951644 to 28951648 4 + TSS region transcription start site region 119061
Tssr121918 13 28951667 to 28951687 20 - TSS region transcription start site region 121918
Tssr121919 13 28951854 to 28951868 14 - TSS region transcription start site region 121919
Tssr121920 13 28952566 to 28952573 7 - TSS region transcription start site region 121920
Tssr121921 13 28952879 to 28952897 18 - TSS region transcription start site region 121921
Tssr121922 13 28953006 to 28953059 53 - TSS region transcription start site region 121922
Tssr121923 13 28953262 to 28953290 28 - TSS region transcription start site region 121923
Tssr121924 13 28953305 to 28953319 14 - TSS region transcription start site region 121924
Tssr121925 13 28953383 to 28953402 19 - TSS region transcription start site region 121925
Tssr121926 13 28953405 to 28953424 19 - TSS region transcription start site region 121926
Tssr121927 13 28953427 to 28953438 11 - TSS region transcription start site region 121927
Tssr121928 13 28953439 to 28953449 10 - TSS region transcription start site region 121928
Tssr121929 13 28953452 to 28953468 16 - TSS region transcription start site region 121929
Tssr121930 13 28953690 to 28953705 15 - TSS region transcription start site region 121930
Tssr119062 13 28953914 to 28953920 6 + TSS region transcription start site region 119062
Cpgi5399 13 28957924 to 28959942 2018 CpG island CpG island 5399
Tssr119063 13 29014305 to 29014324 19 + TSS region transcription start site region 119063
Tssr119064 13 29014406 to 29014411 5 + TSS region transcription start site region 119064
A330102I10Rik 13 29014414 to 29040336 25922 + lincRNA gene RIKEN cDNA A330102I10 gene
Cpgi5400 13 29016163 to 29016327 164 CpG island CpG island 5400
Tssr119065 13 29016267 to 29016303 36 + TSS region transcription start site region 119065
D13Mit83 13 29053566 to 29053689 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 83
D13Mit82 13 29087579 to 29087728 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 82
Gm11363 13 29130211 to 29130758 547 - pseudogene predicted gene 11363
Tssr4027 13 29151995 to 29152000 5 + TSS region transcription start site region 4027
Tssr119066 13 29172553 to 29172555 2 + TSS region transcription start site region 119066
Cdkal1 13 29191746 to 29855674 663928 - protein coding gene CDK5 regulatory subunit associated protein 1-like 1
D13Mit86 13 29235622 to 29235746 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 86
Gm11364 13 29235777 to 29236620 843 - sense intronic lncRNA gene predicted gene 11364
Tssr121931 13 29325710 to 29325724 14 - TSS region transcription start site region 121931
Tssr121932 13 29357674 to 29357695 21 - TSS region transcription start site region 121932