Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:28420034-28925422

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40841 13 28396122 to 28420558 24436 - lincRNA gene predicted gene, 40841
Cpgi5394 13 28419889 to 28420048 159 CpG island CpG island 5394
Tssr121875 13 28450505 to 28450510 5 - TSS region transcription start site region 121875
2610307P16Rik 13 28460034 to 28885422 425388 - lncRNA gene RIKEN cDNA 2610307P16 gene
Gm6081 13 28510744 to 28511232 488 - pseudogene predicted gene 6081
Tssr121876 13 28519680 to 28519684 4 - TSS region transcription start site region 121876
Tssr121877 13 28523166 to 28523169 3 - TSS region transcription start site region 121877
E130104P22Rik 13 28529801 to 28533402 3601 unclassified gene RIKEN cDNA E130104P22 gene
Tssr4024 13 28532499 to 28532502 3 + TSS region transcription start site region 4024
Tssr121878 13 28537693 to 28537697 4 - TSS region transcription start site region 121878
Tssr121879 13 28538412 to 28538414 2 - TSS region transcription start site region 121879
Tssr121880 13 28554868 to 28554914 46 - TSS region transcription start site region 121880
Tssr119054 13 28575744 to 28575748 4 + TSS region transcription start site region 119054
Tssr121881 13 28650140 to 28650146 6 - TSS region transcription start site region 121881
Tssr121882 13 28652702 to 28652706 4 - TSS region transcription start site region 121882
Tssr121883 13 28663379 to 28663383 4 - TSS region transcription start site region 121883
Mir6368 13 28710781 to 28710873 92 - miRNA gene microRNA 6368
Tssr121884 13 28718800 to 28718805 5 - TSS region transcription start site region 121884
2610304O13Rik 13 28725909 to 28726347 438 unclassified gene RIKEN cDNA 2610304O13 gene
Tssr121885 13 28757617 to 28757642 25 - TSS region transcription start site region 121885
Tssr121886 13 28757853 to 28757869 16 - TSS region transcription start site region 121886
Tssr121887 13 28757876 to 28757887 11 - TSS region transcription start site region 121887
9430081I23Rik 13 28769606 to 28772198 2592 unclassified gene RIKEN cDNA 9430081I23 gene
Tssr121888 13 28772176 to 28772181 5 - TSS region transcription start site region 121888
Tssr121889 13 28784314 to 28784319 5 - TSS region transcription start site region 121889
Tssr121890 13 28809690 to 28809694 4 - TSS region transcription start site region 121890
Tssr121891 13 28817613 to 28817616 3 - TSS region transcription start site region 121891
Gm17528 13 28827123 to 28827362 239 + pseudogene predicted gene, 17528
Tssr121892 13 28836089 to 28836094 5 - TSS region transcription start site region 121892
Gm11362 13 28836875 to 28837724 849 + pseudogene predicted gene 11362
Tssr119055 13 28839390 to 28839398 8 + TSS region transcription start site region 119055
5930430O07Rik 13 28860704 to 28863845 3141 unclassified gene RIKEN cDNA 5930430O07 gene
Tssr119056 13 28874292 to 28874296 4 + TSS region transcription start site region 119056
Cpgi5395 13 28884152 to 28884440 288 CpG island CpG island 5395
Tssr121893 13 28884219 to 28884244 25 - TSS region transcription start site region 121893
Tssr121894 13 28884252 to 28884306 54 - TSS region transcription start site region 121894
Tssr121895 13 28884682 to 28884691 9 - TSS region transcription start site region 121895
Cpgi5396 13 28885040 to 28885329 289 CpG island CpG island 5396
Tssr121896 13 28885288 to 28885320 32 - TSS region transcription start site region 121896
Tssr121897 13 28885334 to 28885382 48 - TSS region transcription start site region 121897
Tssr121898 13 28885616 to 28885633 17 - TSS region transcription start site region 121898
Gm34639 13 28889554 to 28898671 9117 - lincRNA gene predicted gene, 34639
Tssr4025 13 28901858 to 28901861 3 + TSS region transcription start site region 4025
Gm34697 13 28905604 to 28909600 3996 - lncRNA gene predicted gene, 34697
Cpgi5397 13 28909489 to 28909797 308 CpG island CpG island 5397
Tssr119057 13 28912025 to 28912026 1 + TSS region transcription start site region 119057
Gm40858 13 28912736 to 28916770 4034 - lncRNA gene predicted gene, 40858