Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:28172499-28892502

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr119052 13 28257590 to 28257600 10 + TSS region transcription start site region 119052
Gm11361 13 28257615 to 28258138 523 + pseudogene predicted pseudogene 11361
Gm47172 13 28285569 to 28309898 24329 + pseudogene predicted gene, 47172
Gm34385 13 28295761 to 28297983 2222 + lncRNA gene predicted gene, 34385
Gm3821 13 28356621 to 28364255 7634 - pseudogene predicted gene 3821
Tssr121871 13 28364315 to 28364321 6 - TSS region transcription start site region 121871
Gm40841 13 28396122 to 28420558 24436 - lincRNA gene predicted gene, 40841
A130022D17Rik 13 28398201 to 28401624 3423 unclassified gene RIKEN cDNA A130022D17 gene
A930025H08Rik 13 28409867 to 28411310 1443 unclassified gene RIKEN cDNA A930025H08 gene
Tssr121872 13 28413096 to 28413100 4 - TSS region transcription start site region 121872
Tssr119053 13 28417534 to 28417549 15 + TSS region transcription start site region 119053
Cpgi5394 13 28419889 to 28420048 159 CpG island CpG island 5394
Tssr121873 13 28419979 to 28419992 13 - TSS region transcription start site region 121873
Tssr121874 13 28419994 to 28420008 14 - TSS region transcription start site region 121874
Tssr121875 13 28450505 to 28450510 5 - TSS region transcription start site region 121875
2610307P16Rik 13 28460034 to 28885422 425388 - lncRNA gene RIKEN cDNA 2610307P16 gene
Gm6081 13 28510744 to 28511232 488 - pseudogene predicted gene 6081
Tssr121876 13 28519680 to 28519684 4 - TSS region transcription start site region 121876
Tssr121877 13 28523166 to 28523169 3 - TSS region transcription start site region 121877
E130104P22Rik 13 28529801 to 28533402 3601 unclassified gene RIKEN cDNA E130104P22 gene
Tssr4024 13 28532499 to 28532502 3 + TSS region transcription start site region 4024
Tssr121878 13 28537693 to 28537697 4 - TSS region transcription start site region 121878
Tssr121879 13 28538412 to 28538414 2 - TSS region transcription start site region 121879
Tssr121880 13 28554868 to 28554914 46 - TSS region transcription start site region 121880
Tssr119054 13 28575744 to 28575748 4 + TSS region transcription start site region 119054
Tssr121881 13 28650140 to 28650146 6 - TSS region transcription start site region 121881
Tssr121882 13 28652702 to 28652706 4 - TSS region transcription start site region 121882
Tssr121883 13 28663379 to 28663383 4 - TSS region transcription start site region 121883
Mir6368 13 28710781 to 28710873 92 - miRNA gene microRNA 6368
Tssr121884 13 28718800 to 28718805 5 - TSS region transcription start site region 121884
2610304O13Rik 13 28725909 to 28726347 438 unclassified gene RIKEN cDNA 2610304O13 gene
Tssr121885 13 28757617 to 28757642 25 - TSS region transcription start site region 121885
Tssr121886 13 28757853 to 28757869 16 - TSS region transcription start site region 121886
Tssr121887 13 28757876 to 28757887 11 - TSS region transcription start site region 121887
9430081I23Rik 13 28769606 to 28772198 2592 unclassified gene RIKEN cDNA 9430081I23 gene
Tssr121888 13 28772176 to 28772181 5 - TSS region transcription start site region 121888
Tssr121889 13 28784314 to 28784319 5 - TSS region transcription start site region 121889
Tssr121890 13 28809690 to 28809694 4 - TSS region transcription start site region 121890
Tssr121891 13 28817613 to 28817616 3 - TSS region transcription start site region 121891
Gm17528 13 28827123 to 28827362 239 + pseudogene predicted gene, 17528
Tssr121892 13 28836089 to 28836094 5 - TSS region transcription start site region 121892
Gm11362 13 28836875 to 28837724 849 + pseudogene predicted gene 11362
Tssr119055 13 28839390 to 28839398 8 + TSS region transcription start site region 119055
5930430O07Rik 13 28860704 to 28863845 3141 unclassified gene RIKEN cDNA 5930430O07 gene
Tssr119056 13 28874292 to 28874296 4 + TSS region transcription start site region 119056
Cpgi5395 13 28884152 to 28884440 288 CpG island CpG island 5395
Tssr121893 13 28884219 to 28884244 25 - TSS region transcription start site region 121893
Tssr121894 13 28884252 to 28884306 54 - TSS region transcription start site region 121894
Tssr121895 13 28884682 to 28884691 9 - TSS region transcription start site region 121895
Cpgi5396 13 28885040 to 28885329 289 CpG island CpG island 5396
Tssr121896 13 28885288 to 28885320 32 - TSS region transcription start site region 121896
Tssr121897 13 28885334 to 28885382 48 - TSS region transcription start site region 121897
Tssr121898 13 28885616 to 28885633 17 - TSS region transcription start site region 121898
Gm34639 13 28889554 to 28898671 9117 - lincRNA gene predicted gene, 34639