Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:25503954-27215026

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11349 13 25582271 to 25583386 1115 - pseudogene predicted gene 11349
D13Mit84 13 25629247 to 25629465 218 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 84
Gm11350 13 25680542 to 25681146 604 - pseudogene predicted gene 11350
Tssr4021 13 25688404 to 25688407 3 + TSS region transcription start site region 4021
Tssr4022 13 25910058 to 25910088 30 - TSS region transcription start site region 4022
Gm11351 13 25921033 to 25966316 45283 - lincRNA gene predicted gene 11351
Tssr121827 13 25986210 to 25986221 11 - TSS region transcription start site region 121827
Gm11352 13 26194701 to 26195217 516 + pseudogene predicted gene 11352
D13Mit133 13 26226802 to 26226951 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 133
D13Mit220 13 26247014 to 26247125 111 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 220
1700092E19Rik 13 26283159 to 26312406 29247 - lincRNA gene RIKEN cDNA 1700092E19 gene
Tssr121828 13 26312385 to 26312403 18 - TSS region transcription start site region 121828
Gm47881 13 26358954 to 26360026 1072 - unclassified gene predicted gene, 47881
Gm11353 13 26492554 to 26493180 626 + pseudogene predicted gene 11353
D13Mit273 13 26548835 to 26548921 86 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 273
D13Mit197 13 26557359 to 26557505 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 197
Gm47883 13 26680568 to 26680693 125 - pseudogene predicted gene, 47883
Hdgfl1 13 26768173 to 26770165 1992 - protein coding gene HDGF like 1
Tssr119011 13 26769366 to 26769377 11 + TSS region transcription start site region 119011
4921520N01Rik 13 26769393 to 26772727 3334 + antisense lncRNA gene RIKEN cDNA 4921520N01 gene
Cpgi5393 13 26769723 to 26770211 488 CpG island CpG island 5393
Tssr121829 13 26770095 to 26770104 9 - TSS region transcription start site region 121829
Tssr121830 13 26770110 to 26770119 9 - TSS region transcription start site region 121830
Tssr121831 13 26770127 to 26770150 23 - TSS region transcription start site region 121831
Tssr121832 13 26770157 to 26770174 17 - TSS region transcription start site region 121832
Gm11354 13 26787365 to 26787786 421 - pseudogene predicted gene 11354
Tssr121833 13 26787796 to 26787810 14 - TSS region transcription start site region 121833
Tssr119012 13 26855204 to 26855208 4 + TSS region transcription start site region 119012
Gm11355 13 26899691 to 26899996 305 - pseudogene predicted gene 11355
Gm47888 13 26968491 to 27058022 89531 - antisense lncRNA gene predicted gene, 47888
Prl 13 27057570 to 27065204 7634 + protein coding gene prolactin
Tssr119013 13 27057571 to 27057584 13 + TSS region transcription start site region 119013
Tssr119014 13 27057601 to 27057611 10 + TSS region transcription start site region 119014
Tssr119015 13 27059382 to 27059391 9 + TSS region transcription start site region 119015
Tssr119016 13 27059432 to 27059439 7 + TSS region transcription start site region 119016
Tssr119017 13 27059498 to 27059507 9 + TSS region transcription start site region 119017
Tssr119018 13 27061527 to 27061538 11 + TSS region transcription start site region 119018
Tssr119019 13 27064344 to 27064356 12 + TSS region transcription start site region 119019
Tssr119020 13 27065142 to 27065148 6 + TSS region transcription start site region 119020
Tssr119021 13 27094188 to 27094191 3 + TSS region transcription start site region 119021
Prl3d1 13 27094190 to 27100258 6068 + protein coding gene prolactin family 3, subfamily d, member 1
Prl3d2 13 27121698 to 27127555 5857 + protein coding gene prolactin family 3, subfamily d, member 1
Prl3d3 13 27156790 to 27162593 5803 + protein coding gene prolactin family 3, subfamily d, member 3
Tssr119022 13 27196640 to 27196646 6 + TSS region transcription start site region 119022
Prl3c1 13 27196660 to 27203749 7089 + protein coding gene prolactin family 3, subfamily c, member 1
Tssr121834 13 27198796 to 27198801 5 - TSS region transcription start site region 121834