Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:24840464-25270497

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tdp2 13 24831679 to 24842153 10474 + protein coding gene tyrosyl-DNA phosphodiesterase 2
Cpgi5388 13 24844898 to 24845381 483 CpG island CpG island 5388
Tssr118972 13 24845106 to 24845120 14 + TSS region transcription start site region 118972
Tssr118973 13 24845122 to 24845186 64 + TSS region transcription start site region 118973
D130043K22Rik 13 24845135 to 24901270 56135 + protein coding gene RIKEN cDNA D130043K22 gene
Tssr118974 13 24879865 to 24879870 5 + TSS region transcription start site region 118974
Tssr118975 13 24905592 to 24905609 17 + TSS region transcription start site region 118975
4932702P03Rik 13 24905600 to 24911780 6180 + antisense lncRNA gene RIKEN cDNA 4932702P03 gene
Tssr118976 13 24905616 to 24905633 17 + TSS region transcription start site region 118976
Tssr118977 13 24905635 to 24905647 12 + TSS region transcription start site region 118977
Tssr118978 13 24905656 to 24905661 5 + TSS region transcription start site region 118978
Aldh5a1 13 24907579 to 24937661 30082 - protein coding gene aldhehyde dehydrogenase family 5, subfamily A1
Cpgi5389 13 24937084 to 24938170 1086 CpG island CpG island 5389
Tssr118979 13 24937144 to 24937166 22 + TSS region transcription start site region 118979
Tssr118980 13 24937178 to 24937204 26 + TSS region transcription start site region 118980
Tssr118981 13 24937208 to 24937219 11 + TSS region transcription start site region 118981
9330162012Rik 13 24937401 to 24939049 1648 + bidirectional promoter lncRNA gene cDNA RIKEN 9330162012 gene
Tssr121817 13 24937585 to 24937691 106 - TSS region transcription start site region 121817
Tssr118982 13 24942690 to 24942711 21 + TSS region transcription start site region 118982
Tssr118983 13 24942714 to 24942764 50 + TSS region transcription start site region 118983
Tssr118984 13 24942895 to 24942930 35 + TSS region transcription start site region 118984
Tssr118985 13 24943144 to 24943164 20 + TSS region transcription start site region 118985
Gpld1 13 24943152 to 24992501 49349 + protein coding gene glycosylphosphatidylinositol specific phospholipase D1
Tssr118986 13 24943165 to 24943176 11 + TSS region transcription start site region 118986
Tssr118987 13 24943180 to 24943207 27 + TSS region transcription start site region 118987
Tssr118988 13 24943212 to 24943222 10 + TSS region transcription start site region 118988
Tssr118989 13 24943485 to 24943509 24 + TSS region transcription start site region 118989
Tssr118990 13 24943518 to 24943531 13 + TSS region transcription start site region 118990
Tssr118991 13 24943542 to 24943562 20 + TSS region transcription start site region 118991
Tssr118992 13 24943567 to 24943576 9 + TSS region transcription start site region 118992
Tssr118993 13 24943578 to 24943593 15 + TSS region transcription start site region 118993
Tssr118994 13 24943595 to 24943606 11 + TSS region transcription start site region 118994
Tssr118995 13 24964279 to 24964285 6 + TSS region transcription start site region 118995
Gm34019 13 24965108 to 24968304 3196 - lncRNA gene predicted gene, 34019
Tssr4020 13 24966952 to 24966954 2 - TSS region transcription start site region 4020
Mrs2 13 24987483 to 25020365 32882 - protein coding gene MRS2 magnesium transporter
Gm9983 13 24989318 to 24989644 326 protein coding gene predicted gene 9983
Tssr118996 13 24990366 to 24990409 43 + TSS region transcription start site region 118996
Cpgi5390 13 25019655 to 25020658 1003 CpG island CpG island 5390
Tssr121818 13 25020104 to 25020113 9 - TSS region transcription start site region 121818
Tssr121819 13 25020118 to 25020137 19 - TSS region transcription start site region 121819
Tssr121820 13 25020289 to 25020346 57 - TSS region transcription start site region 121820
Gm47605 13 25035059 to 25035328 269 + pseudogene predicted gene, 47605
Cpgi5391 13 25054967 to 25056545 1578 CpG island CpG island 5391
Tssr118997 13 25055278 to 25055297 19 + TSS region transcription start site region 118997
Tssr118998 13 25055464 to 25055497 33 + TSS region transcription start site region 118998
Tssr118999 13 25055964 to 25055975 11 + TSS region transcription start site region 118999
Dcdc2a 13 25056004 to 25210706 154702 + protein coding gene doublecortin domain containing 2a
Tssr119000 13 25056044 to 25056054 10 + TSS region transcription start site region 119000
Tssr119001 13 25056155 to 25056205 50 + TSS region transcription start site region 119001
Tssr119002 13 25056206 to 25056219 13 + TSS region transcription start site region 119002
D13Mit58 13 25073027 to 25073158 131 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 58
Tssr119003 13 25074691 to 25074721 30 + TSS region transcription start site region 119003
Tssr119004 13 25074748 to 25074756 8 + TSS region transcription start site region 119004
Tssr119005 13 25097575 to 25097579 4 + TSS region transcription start site region 119005
Tssr119006 13 25127251 to 25127257 6 + TSS region transcription start site region 119006
Gm11348 13 25130747 to 25131064 317 - pseudogene predicted gene 11348
Tssr119007 13 25151722 to 25151745 23 + TSS region transcription start site region 119007
4930483C01Rik 13 25170721 to 25171830 1109 unclassified gene RIKEN cDNA 4930483C01 gene
Tssr119008 13 25187438 to 25187456 18 + TSS region transcription start site region 119008
Tssr119009 13 25191881 to 25191886 5 + TSS region transcription start site region 119009
Tssr119010 13 25208386 to 25208391 5 + TSS region transcription start site region 119010
D13Mit176 13 25225237 to 25225371 134 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 176
Nrsn1 13 25252039 to 25269996 17957 - protein coding gene neurensin 1
Tssr121821 13 25269166 to 25269213 47 - TSS region transcription start site region 121821
Cpgi5392 13 25269721 to 25270224 503 CpG island CpG island 5392
Tssr121822 13 25269898 to 25269907 9 - TSS region transcription start site region 121822
Tssr121823 13 25269913 to 25269914 1 - TSS region transcription start site region 121823
Tssr121824 13 25269920 to 25270025 105 - TSS region transcription start site region 121824
Tssr121825 13 25270036 to 25270050 14 - TSS region transcription start site region 121825
Tssr121826 13 25270076 to 25270094 18 - TSS region transcription start site region 121826